Succession of root-associated fungi in Pisum sativum during a plant growth cycle as examined by 454 pyrosequencing

Purpose

Roots are inhabited by a broad range of fungi, including pathogens and mycorrhizal fungi, with functional traits related to plant health and nutrition. Management of these fungi in agroecosystems requires profound knowledge about their ecology. The main objective of this study was to examine succession patterns of root-associated fungi in pea during a full plant growth cycle.

Methods

Plants were grown in pots with field soil in a growth chamber under controlled conditions. Fungal communities in pea roots were analyzed at different plant growth stages including the vegetative growth, flowering and senescence, using 454 pyrosequencing.

Results

One hundred and twenty one non-singleton operational taxonomic units (OTUs) representing fungal species were detected. Pathogenic and arbuscular mycorrhizal fungi dominated during the vegetative growth stage, whereas saprotrophic fungi dominated during plant senescence.

Conclusions

In conclusion, the results from the present study demonstrated highly diverse fungal communities in pea roots with clear succession patterns related to fungal traits.     

Short-term effects of litter from 21 woody species on plant growth and root development

Background and aims

Plant litter has an important role in terrestrial ecosystems (Lambers et al. 2008). Our aim was to assess the short-term effect of litter from 21 woody species (deciduous and evergreens) on plant growth and root development.

Methods

We conducted a short-term experiment (10 weeks) under controlled conditions adding litter from 21 woody species to pots with Dactylis glomerata (target species). We determined plant biomass and root development and related these variables to decomposition rate and litter quality.

Results

Litter from two species enhanced plant growth whereas litter of five species inhibited it. Considering all species in the data set, plant growth was associated to litter with high decomposition rate and high litter quality: high Ca and N concentration and low polyphenols concentration. However, excluding from the analyses the two species that increased growth, litter inhibition effect on plant growth was related to the litter-polyphenols concentration. Plants growing with nutrient-richer litter had a lower proportion of fine roots which could be related to a litter mediated increase in soil nutrient.

Conclusions

Enhanced plant growth or, on the contrary, plant growth inhibition could be the result of a positive or, in turn, negative balance between nutrient and polyphenols concentration in litter.     

Effect of the aerenchymatous helophyte Glyceria maxima on the sulfate-reducing communities in two contrasting riparian grassland soils

Aims

The research aimed at studying the effect of flooding with sulfate-rich water on the activity, abundance and diversity of sulfate-reducing micro-organisms present in the root zone of an oxygen-releasing plant growing on two riparian grassland soils with contrasting amounts of iron.

Methods

A series of microcosms was used to investigate the effects. Plants were grown under controlled conditions in microcosms containing a rhizosphere and bulk soil compartment for a period of 12 weeks in the presence of sulfate-rich flood water. Molybdate-treated systems served as non-sulfate-reducing controls.

Results

At harvest, activity and numbers of sulfate-reducing micro-organisms were higher in the absence of molybdate, but a rhizosphere effect and an impact of the presence of high levels of iron were not observed on activity and numbers. Both soils had in common a diverse community of sulfate-reducing micro-organisms covering all major cultured bacterial taxa. The appearance of members of the Desulfovibrionaceae exclusively in the rhizosphere of G. maxima was the only unambiguous indication of a plant effect.

Conclusion

The presence of sulfate-rich flood water stimulated the activity and growth of a part of the sulfate-reducing community leading to a change in community composition. The proximity of aerenchymatous plant roots and the abundance of iron in the soil had a negligible effect on the sulfate-reducing community.     

Tomato sap flow, stem and fruit growth in relation to water availability in rockwool growing medium

Background and aims

Irrigation strategies for glasshouse tomato are often based on solar radiation sums. However, due to new energy-saving climate control, current strategies might result in inappropriate irrigation. Because of the limited water buffering capacity of soilless growing media like rockwool, this could have adverse effects on fruit production and quality. We present an overview of tomato plant ecophysiological responses to substrate water availability to allow the evaluation of mechanistic hypotheses about internal plant water storage and depletion and reversible stem-fruit water transport.

Methods

The hydraulic properties of the growing medium were determined and plant water uptake, stem and fruit diameter variations were studied.

Results

A low substrate matric suction (?2 to ?3?kPa) had a significant effect on stem and fruit growth dynamics. The substrate water retention curve indicated a sharp decrease in hydraulic conductivity, limiting the water availability for plant roots significantly.

Conclusions

The hydraulic properties of the growing medium are of utmost importance for plant water uptake, and should therefore be incorporated in plant models describing water flow. Internally stored water responds instantaneously to varying water availability and rates of water backflow from tomato fruits can be quite substantial.     

Depredation of domestic herds by pumas based on farmer’s information in Southern Brazil

Background

We can conserve cultural heritage and gain extensive knowledge of plant species with pharmacological potential to cure simple to life-threatening diseases by studying the use of plants in indigenous communities. Therefore, it is important to conduct ethnobotanical studies in indigenous communities and to validate the reported uses of plants by comparing ethnobotanical studies with phytochemical and pharmacological studies.

Materials and methods

This study was conducted in a Tamang community dwelling in the Makawanpur district of central Nepal. We used semi-structured and structured questionnaires during interviews to collect information. We compared use reports with available phytochemical and pharmacological studies for validation.

Results

A total of 161 plant species belonging to 86 families and 144 genera to cure 89 human ailments were documented. Although 68 plant species were cited as medicinal in previous studies, 55 different uses described by the Tamang people were not found in any of the compared studies. Traditional uses for 60 plant species were consistent with pharmacological and phytochemical studies.

Conclusions

The Tamang people in Makawanpur are rich in ethnopharmacological understanding. The present study highlights important medicinal plant species by validating their traditional uses. Different plant species can improve local economies through proper harvesting, adequate management and development of modern techniques to maximize their use.     

Spatial root distribution of plants growing in vertical media for use in living walls

Background and Aims

For plants growing in living walls, the growth potential is correlated to the roots ability to utilize resources in all parts of the growing medium and thereby to the spatial root distribution. The aim of the study was to test how spatial root distribution was affected by growing medium, planting position and competition from other plants.

Methods

Five species (Campanula poscharskyana cv. ‘Stella’, Fragaria vesca cv. ‘Småland’, Geranium sanguineum cv. ‘Max Frei’, Sesleria heufleriana and Veronica officinalis cv. ‘Allgrün’) were grown in three growing media (coir and two of rockwool) in transparent boxes under greenhouse conditions. Root frequency was registered and the activity of individual root systems was studied via ¹⁵N uptake and plant dry weight was measured.

Results

Plants in coir had stronger root growth in all parts of the medium than plants in rockwool. Upwards root growth was limited for plants in the middle or lower parts of the medium and ¹⁵N measurements confirmed that only plants in the bottom of the box had active roots in the bottom of the medium. The species differed in root architecture and spatial root distribution.

Conclusions

The choice of growing medium, plant species and planting position is important for a living wall as it affects the spatial root growth of the plants.     

The temporal development and additivity of plant-soil feedback in perennial grasses

Background

Current knowledge of plant-soil feedback is based largely on single end point studies with soils conditioned by monocultures, but accounting for variability in the ecological impacts of feedback effects may require understanding how feedback develops over time and in multi-species plant communities.

Methods

To examine temporal development and additivity of feedback, two pairs of native and non-native congeneric grasses were grown alone or in mixtures to create six soil conditioning treatments. We measured plant growth and feedback on the soils over 19 months and addressed whether plant biomass was additive or non-additive between soils treated by mixtures and their constituent monocultures.

Results

For native grasses, plant-soil feedback either became progressively more negative through time or switched from neutral to negative. Feedback to non-native grasses was variably neutral to positive. Final biomass of the grasses growing on soils conditioned by mixtures was generally an additive function of growth on soils conditioned by the component monocultures, except native grasses growing in soils conditioned by their own congener mixtures, which were non-additive.

Conclusions

Temporal variation and non-additivity in feedback suggest that extrapolation to communities may be complex. More work is needed to assess the generality of temporal and scaling effects.     

Arbuscular mycorrhizal symbiosis alleviates drought stress imposed on Knautia arvensis plants in serpentine soil

Background and Aims

Plants growing on serpentine bedrock have to cope with the unique soil chemistry and often also low water-holding capacity. As plant-soil interactions are substantially modified by arbuscular mycorrhizal (AM) symbiosis, we hypothesise that drought tolerance of serpentine plants is enhanced by AM fungi (AMF).

Methods

We conducted a pot experiment combining four levels of drought stress and three AMF inoculation treatments, using serpentine Knautia arvensis (Dipsacaceae) plants as a model.

Results

AMF inoculation improved plant growth and increased phosphorus uptake. The diminishing water supply caused a gradual decrease in plant growth, accompanied by increasing concentrations of drought stress markers (proline, abscisic acid) in root tissues. Mycorrhizal growth dependence and phosphorus uptake benefit increased with drought intensity, and the alleviating effect of AMF on plant drought stress was also indicated by lower proline accumulation.

Conclusions

We documented the role of AM symbiosis in plant drought tolerance under serpentine conditions. However, the potential of AMF to alleviate drought stress was limited beyond a certain threshold, as indicated by a steep decline in mycorrhizal growth dependence and phosphorus uptake benefit and a concomitant rise in proline concentrations in the roots of mycorrhizal plants at the highest drought intensity.     

Phototropism in land plants: Molecules and mechanism from light perception to response

Background

Phototropism is the response a plant exhibits when it is faced with a directional blue light stimulus. Though a seemingly simple differential cell elongation response within a responding tissue that results in organ curvature, phototropism is regulated through a complex set of signal perception and transduction events that move from the plasma membrane to the nucleus. In nature phototropism is one of several plant responses that have evolved to optimize photosynthesis and growth.

Objective

In the present work we will review the state of the field with respect to the molecules and mechanisms associated with phototropism in land plants.

Methods

A systematic literature search was done to identify relevant advances in the field. Though we tried to focus on literature within the past decade (1998-present), we have discussed and cited older literature where appropriate because of context or its significant impact to the present field. Several previous review articles are also cited where appropriate and readers should seek those out.

Results

A total of 199 articles are cited that fulfill the criteria listed above.

Conclusions

Though important numerous and significant advances have been made in our understanding of the molecular, biochemical, cell biological and physiologic mechanisms underlying phototropism in land plants over the past decade, there are many remaining unanswered questions. The future is indeed bright for researchers in the field and we look forward to the next decade worth of discoveries.

     

The effect of soil water status on fertiliser, topsoil and subsoil phosphorus utilisation by wheat

Background and aims

Crop phosphorus (P) content is controlled by P uptake from both banded P fertiliser and from P throughout the soil profile. These P supply factors are in turn controlled by soil, climatic and plant factors. The aim of this experiment was to measure the contribution of fertiliser, topsoil and subsoil P to wheat plants under wet and dry growing season conditions.

Methods

An isotopic tracer technique was used to measure P uptake from fertiliser at seven agricultural field sites under wet and dry growing season conditions. At three of these sites a dual isotopic technique was used to distinguish between wheat uptake of P from fertiliser, topsoil (0–15 cm) and subsoil (below 15 cm).

Results

The amount of P fertiliser used by wheat was in the order of 3–30% of the P applied and increased with increasing rainfall. Topsoil P was the most important P source, but when sufficient P was present in the subsoil, P fertiliser addition stimulated the use of subsoil P.

Conclusions

Most crop P uptake was from the topsoil, however P fertiliser banded below the seed increased plant P uptake and stimulated the use of subsoil P in one soil type in a decile 7 (above average rainfall) growing season.     

The significance of D-amino acids in soil, fate and utilization by microbes and plants: review and identification of knowledge gaps

Background

D-amino acids are far less abundant in nature than L-amino acids. Both L- and D-amino acids enter soil from different sources including plant, animal and microbial biomass, antibiotics, faeces and synthetic insecticides. Moreover, D-amino acids appear in soil due to abiotic or biotic racemization of L-amino acids. Both L- and D-amino acids occur as bound in soil organic matter and as “free“ amino acids dissolved in soil solution or exchangeably bound to soil colloids. D-amino acids are mineralized at slower rates compared to the corresponding L-enantiomers. Plants have a capacity to directly take up “free“ D-amino acids by their roots but their ability to utilize them is low and thus D-amino acids inhibit plant growth.

Scope

The aim of this work is to review current knowledge on D-amino acids in soil and their utilization by soil microorganisms and plants, and to identify critical knowledge gaps and directions for future research.

Conclusion

Assessment of “free“ D-amino acids in soils is currently complicated due to the lack of appropriate extraction procedures. This information is necessary for consequent experimental determination of their significance for crop production and growth of plants in different types of managed and unmanaged ecosystems. Hypotheses on occurrence of “free“ D-amino acids in soil are presented in this review.     

Root plasticity maintains growth of temperate grassland species under pulsed water supply

Background and aims

The frequency of rain is predicted to change in high latitude areas with more precipitation in heavy, intense events interspersed by longer dry periods. These changes will modify soil drying cycles with unknown consequences for plant performance of temperate species.

Methods

We studied plant growth and root traits of juveniles of four grasses and four dicots growing in a greenhouse, when supplying the same total amount of water given either regular every other day or pulsed once a week.

Results

Pulsed water supply replenished soil moisture immediately after watering, but caused substantial drought stress at the end of the watering cycle, whereas regular watering caused more moderate but consistent drought. Grasses had lower water use efficiency in the pulsed watering compared to regular watering, whereas dicots showed no difference. Both grasses and dicots developed thinner roots, thus higher specific root length, and greater root length in the pulsed watering. Growth of dicots was slightly increased under pulsed watering.

Conclusions

Temperate species coped with pulsed water supply by eliciting two responses: i) persistent shoot growth, most likely by maximizing growth at peaks of soil moisture, thus compensating for slower growth during drought periods; ii) plasticity of root traits related to increased resource uptake. Both responses likely account for subtle improvement of growth under changed water supply conditions.     

Influence of selenium (Se) on carbohydrate metabolism, nodulation and growth in alfalfa (Medicago sativa L.)

Background and aims

Extensive worldwide dryland degradation calls for identification of functional traits critical to dryland plant performance and restoration outcomes. Most trait examination has focused on drought tolerance, although most dryland systems are water and nutrient co-limited. We studied how drought impacts both plant water relations and nitrogen (N) nutrition.

Methods

We grew a suite of grasses common to the Intermountain West under both well-watered and drought conditions in the greenhouse. These grasses represented three congener pairs (Agropyron, Elymus, Festuca) differing in their habitat of origin (“wetter” or “drier”). We measured growth, water relations, N resorption efficiency and proficiency and photosynthetic N use efficiency in response to drought.

Results

Drought decreased growth and physiological function in the suite of grasses studied, including a negative impact on plant N resorption efficiency and proficiency. This effect on resorption increased over the course of the growing season. Evolutionary history constrained species responses to treatment, with genera varying in the magnitude of their response to drought conditions. Surprisingly, habitat of origin influenced few trait responses.

Conclusions

Drought impacted plant N conservation, although these responses also were constrained by evolutionary history. Future plant development programs should consider drought tolerance not only from the perspective of water relations but also plant mineral nutrition, taking into account the role of phylogeny.     

The taxonomist - an endangered race. A practical proposal for its survival

Background

Taxonomy or biological systematics is the basic scientific discipline of biology, postulating hypotheses of identity and relationships, on which all other natural sciences dealing with organisms relies. However, the scientific contributions of taxonomists have been largely neglected when using species names in scientific publications by not citing the authority on which they are based.

Discussion

Consequences of this neglect is reduced recognition of the importance of taxonomy, which in turn results in diminished funding, lower interest from journals in publishing taxonomic research, and a reduced number of young scientists entering the field. This has lead to the so-called taxonomic impediment at a time when biodiversity studies are of critical importance. Here we emphasize a practical and obvious solution to this dilemma. We propose that whenever a species name is used, the author(s) of the species hypothesis be included and the original literature source cited, including taxonomic revisions and identification literature - nothing more than what is done for every other hypothesis or assumption included in a scientific publication. In addition, we postulate that journals primarily publishing taxonomic studies should be indexed in ISI^SM.

Summary

The proposal outlined above would make visible the true contribution of taxonomists within the scientific community, and would provide a more accurate assessment for funding agencies impact and importance of taxonomy, and help in the recruitment of young scientists into the field, thus helping to alleviate the taxonomic impediment. In addition, it would also make much of the biological literature more robust by reducing or alleviating taxonomic uncertainty.     

Root exudation pattern of Typha latifolia L. plants after copper exposure

Aims

Typha latifolia L. is an aquatic plant that has been widely exploited for the aims of phytoremediation. The main reason why we have chosen this plant species for the current study is its capacity to accumulate and detoxify heavy metals. The main topic of the investigation focused on the root uptake of copper (II) nitrate and copper (II) sulfate and the impact of different chemical copper species on the excreted organic acids.

Methods

Oxalic, malic, acetic and lactic acids were determined using capillary electrophoresis; a comparison between the concentration and the time course during 7 days of treatment was performed.

Results

There is a correlation between the total copper (II) sulfate concentration in the roots and the total amount of the excreted organic acids. In addition to that organic acids are involved in the detoxification mechanisms of Typha latifolia for copper (II) nitrate and copper (II) sulfate.

Conclusions

Different from so far investigated plant species the highest amounts of organic acids are excreted from T. latifolia roots not in the first hours after treatment, but up to 7 days later.     

Effects of the time of drought occurrence within the growing season on growth and survival of Pinus ponderosa seedlings

Key message

A drought event during spring produces a stronger and long lasting decrease in growth of ponderosa pine seedlings than a summer drought event. However, survival is not differentially affected.

Abstract

Although there is certainty about the increasing frequency of extreme climatic events, the consequences of changing patterns of drought events within the growing season on the growth and survival of different species are much less certain. In particular, little knowledge is available on the differential effect on tree seedlings of a drought event at different times within the growing season. The objective of this study was to quantify the effect of a drought event imposed at different times over the growing season on the growth, survival and some related morphological and physiological variables of Pinus ponderosa seedlings from two seed sources. Four treatments were applied: control conditions; spring drought; summer drought and spring plus summer drought (SpSuD). A drought event in spring reduced stem growth and biomass accumulation in ponderosa pine seedlings during the occurrence of the drought and afterwards, even when plant water status had recovered. The lack of growth recovery could not be associated with loss of stem hydraulic conductivity or reduction in stomatal conductance after drought. However, the spring drought did not differentially affect plant survival, as was the case with prolonged drought in the SpSuD treatment. The summer drought event had a significant but much smaller impact on plant growth. Our results suggest different consequences of a drought event in spring or in summer in ponderosa pine seedlings. This knowledge may be relevant to understand and predict tree seedlings responses to changing patterns of drought events within the growing season in the framework of climatic change.     

Massive aerial roots affect growth and form of Dracaena draco

Key message

Large aerial roots grow out from the branches of injured Dracaena draco trees. They integrate with the trunk or cause the branches to break off the tree and deform it.

Abstract

Dracaena draco, the dragon tree, is an iconic monocot of the Canary Islands with a tree-like growth habit and some distinctive features that are unique in the plant kingdom. We report about the massive aerial roots in this tree. They appear on trees that are injured or under environmental stress and affect growth form and the whole life of the plant. We analysed the growth of these roots and tested our findings in experiments on plants. Clusters of these roots emerge from the bases of the lowest branches and growing down they may reach the soil. Descending along the trunk, they cling tightly to the trunk, integrate with it and contribute to its radial growth. This may explain (1) why the trunk of a mature D. draco tree looks fibrous, as if made of many individual strands, and (2) how some trees reach enormous radial dimensions. Alternately, a large, 2–5 m high, multi-segmented branch with aerial roots at its base, may break off the tree and grow on its own, as a mammoth off-cut, perhaps the largest known in the plant kingdom. This detachment would cause a significant reduction in the size of the crown and deform its original, highly organized pattern of branching. In the extreme condition this may result in the destruction of the mother plant.     

Microbial-mediated feedbacks of leaf litter on invasive plant growth and interspecific competition

Background and Aims

In line with the Stress Gradient Hypothesis, studies of facilitation have tended to focus on plant–plant interactions (biotic nurses), while the relative role of abiotic nurses has been little studied. We assessed the role of biotic and abiotic nurses, and their interaction, on soil enhancement and the consequential performance of a native annual grass, Dactyloctenium radulans.

Methods

We used a growth chamber study with two levels of water application to compare the performance of D. radulans growing in soil from foraging pits of the Short-beaked echidna (Tachyglossus aculeatus; abiotic nurse) and non-pit soil from either under tree canopies (biotic nurse) or surrounding open areas.

Results

All measures of plant performance were more pronounced under the high than the low water treatment. The greatest differences between pit and surface Microsites occurred under the low water application, reinforcing our view that facilitatory effects are greater in resource-limited environments. Despite tree canopy soil having greater N, there was no significant effect on plant performance, nor any significant interaction with Microsite.

Conclusions

Our study provides strong evidence that foraging pits enhance soil properties and this soil, in turn, facilitates plant growth; and supports previous work documenting the positive effect of nurse-protégé interactions under greater levels of abiotic stress.