Overexpression of tomato GDP-l-galactose phosphorylase gene in tobacco improves tolerance to chilling stress

Key message

The overexpression of tomato GDP- l -galactose phosphorylase gene enhanced tolerance to chilling stress and reduced photoinhibition of photosystems I and II in transgenic tobacco.

Abstract

Chilling stress is a crucial factor that limits the geographical distribution and yield of chilling-sensitive plants. Ascorbate (AsA) protects plants by scavenging reactive oxygen species and reduces photoinhibition by promoting the conversion of violaxanthin to zeaxanthin in the xanthophyll cycle to dissipate excess excitation energy. Possible mechanisms of AsA for plant photoprotection under chilling stress were investigated by isolating the tomato GDP-l-galactose phosphorylase gene (SlGGP) and producing transgenic tobacco plants with overexpression of SlGGP. The transgenic plants subjected to chilling stress accumulated less H₂O₂, demonstrated lower levels of ion leakage and malondialdehyde, and acquired higher net photosynthetic rate, higher maximum photochemical efficiency of PSII, and higher D1 protein content compared with the wild-type (WT) plants. The transgenic plants subjected to chilling stress also showed higher GDP-l-galactose phosphorylase activity, increased AsA content as well as ascorbate peroxidase and oxidizable P700 activities than WT plants. Thus, SlGGP overexpression is crucial in promoting AsA synthesis and alleviating photoinhibition of two photosystems.     

Root growth response of rainfed lowland rice to aerobic conditions in northeastern Thailand

Background and aims

Rice plants alternately experience anaerobic and aerobic conditions during their life cycle in rainfed lowlands. Each condition affects root growth differently. Our objective was to clarify the specific rice root response to aerobic conditions in rainfed lowlands.

Methods

At the Ubon Ratchathani Rice Research Center in northeastern Thailand, we obtained root samples from 17 ‘Surin1’ (Thai variety) BC₃-derived lines and 7 CT9993-5-10-1-M × IR62266-42-6-2 doubled-haploid lines from flooded and non-flooded paddy fields at the reproductive stage in 2010 and 2011.

Results

In the non-flooded trial, rice was grown aerobically by draining the perched water; soil moisture at a depth of 20 cm fluctuated between ?10 and ?30 kPa. Deep rooting was likely promoted under aerobic conditions, but slightly drier soils under longer dry spells seemed to restrict root penetration, as the topsoil rapidly hardened during dry spells of only a few days. Fine-root development in the topsoil was inhibited under aerobic conditions.

Conclusions

Even without drought stress, rice roots respond significantly to the disappearance of standing water in rainfed lowlands via deep rooting and root branching. We identified one promising ‘Surin1’ BC₃-derived line showing an adaptive response of deep rooting under aerobic conditions, which can be used as a breeding material for rainfed lowland rice in Thailand.     

Root dynamics of Carex stricta-dominated tussock meadows

Background and aims

The roots of tussock-forming plants contribute to the formation of microtopographic features in many ecosystems, but the dynamics of such roots are poorly understood. We examined the spatial heterogeneity of tussock fine root dynamics to investigate allocation patterns and the role of root productivity in the persistence of tussock structures.

Methods

We compared the spatial variability of fine root (<1 mm, 1–2 mm) density, biomass, % live, allocation, turnover rate (using bomb 14C), and productivity of four Carex stricta Lam.-dominated tussock meadows in the upper Midwest, USA (3 reference, 1 restored site).

Results

Relative to underlying microsites, tussocks were warm, dry, and high in root density, productivity, % live biomass, and turnover. Root productivity averaged 649 g?m^?2 yr^?1 (±208) in reference sites, comprised 57 % (±10) of total net production, and was concentrated in tussocks (70 %?±?4). Root turnover rate averaged 0.63 yr^?1 (±0.08), but tussocks had ~50 % faster root turnover than the underlying soil, and <1 mm roots turned over ~40 % faster than 1–2 mm roots.

Conclusions

Our detailed analysis of the spatial heterogeneity of tussock root dynamics suggests that high allocation and elevated turnover of tussock roots facilitates organic matter accumulation and tussock persistence over time.     

Genetic diversity of soybean-nodulating rhizobia in Nepal in relation to climate and soil properties

Backgroud and aims

This study was conducted to reveal the genetic diversity of soybean-nodulating rhizobia in Nepal in relation to climate and soil properties.

Method

A total of 102 bradyrhizobial strains were isolated from the root nodules of soybeans cultivated in 12 locations in Nepal varying in climate and soil properties, and their genetic diversity was examined based on 16S rDNA, ITS regions of 16S–23S rDNA, nodC and nifH. In vitro growth properties of some representative strains were examined to elucidate their characteristic distribution in Nepal.

Results

Four species of the genus Bradyrhizobium were isolated, and B. japonicum dominated at temperate locations, while in subtropical locations, B. elkanii, B. yuanmingense, and B. liaoningense dominated at acidic, moderately acidic, and slightly alkaline soils, respectively. The relative nodule occupancies could not be fully explained by their in vitro growth properties. Similar nodC and nifH genes among the strains suggested co-evolution of these genes also in Nepal, probably through horizontal gene transfer.

Conclusions

The influence of climate and soil pH on diversity at the sub-species level was revealed. It is concluded that the highly diverse climate and soils in Nepal might be conducive for the existence of diverse soybean rhizobial strains.     

Agarose plating and a bead type culture technique enable and stimulate development of protoplast-derived colonies in a number of plant species

Two novel techniques improve division and colony formation from protoplasts:

1. Plating in agarose stimulates colony formation of protoplasts from a wide range of species. Protoplasts from Nicotiana tabacum developed to colonies from lower initial population densities in agarose than in agar or liquid. Protoplasts from Hyoscyamus muticus which do not divide in agar divided and formed colonies in agarose at higher efficiencies than in liquid medium.
2. Culture of gel embedded protoplasts in large volumes of liquid medium on a gyrotatory shaker (‘bead culture’) further improved plating efficiencies in some species (e.g. Lycopersicon esculentum and Crepis capillaris) and enabled sustained proliferation of protoplasts which had not previously developed beyond the few cell colony stage (Brassica rapa and a mutator gene variety of Petunia hybrida).

The combination of ‘agarose plating’ and ‘bead culture’ dramatically improved plating efficiencies of protoplasts in all species tested.     

Interannual variations in primary and secondary growth of Nothofagus pumilio and their relationships with climate

Key message

The aim of this study is to evaluate the relationships between primary and secondary growth as well as the influences of climate variations on both types of growth.

Abstract

The relationships between apical (or primary) and radial (or secondary) growth, and climatic influences on both types of growth, were evaluated for Nothofagus pumilio (Nothofagaceae), the dominant subalpine tree in Patagonia. We measured the spacing and number of nodes of annual shoots developed in the period 2001–2010 in 40 N. pumilio trees growing near the upper treeline in the northern Patagonian Andes (41°S). Variations in ring width at the base of each trunk were also recorded. Interannual variations in primary and secondary growth were significantly related to each other, and to several climate variables. Mean temperatures in winter and early spring (June–October) prior to the period of shoot extension were positively associated with both primary and secondary growth. In addition, total summer precipitation (December–March) was positively related to shoot extension, whereas mean summer temperature during the previous growth season (January–March) was directly related to radial growth. These climatic influences on N. pumilio growth may play a major role in regulating the expressions of preformation and neoformation.     

Existe-t-il une hêtraie ‘Méditerranéenne’ distincte des autres forêts de hêtre en Europe occidentale?

The study area is at the southern limit of the beech area, between the rivers Rhône in France and Ebro in Spain. From an analysis of the occurrence of beechwoods in this region and the pluviometric climate, it appears that part of the beechwood is found in a dry climate, which is still mediterranean. This argument seems sufficient to justify the existence of a ‘mediterranean’ beechwood, at least on a climatic level. Beechwood when occurring in a dry climate has special characteristics:

- The development of the wood differs with the climate. Young beeches need shadow in a dry climate; they can grow in full light in a moist climate.

- The floristic composition is different.

- The understorey of dry woods is less structured than that of moist woods.

- The genetic structure as measured in the enzymatic system Px₁ is polymorphic in the dry and monomorphic in the moist conditions studied.

It would be interesting to verify if the characters noted in a dry mediterranean climate are also present in dry atlantic or continental beechwoods. Since the mediterranean climate is drier and more unfavorable to beech than other climates, the particular characters of ‘dry’ beechwoods will be more pronounced near the Mediterranean.     

Development of SCAR marker for sex identification in dioecious Garcinia gummi-gutta

Key message

We have developed sex-specific SCAR marker for the identification of dioecious Garcinia gummi - gutta (L.), which is useful for the selection of G. gummi - gutta at seedling stage and for plantation programmes.

Abstract

Garcinia gummi-gutta (L.) Robs. is a dioecious fruit yielding tree, which is naturally distributed as well as cultivated in the orchards in Western Ghat regions of India. A sex-linked DNA fragment was identified in Garcinia gummi-gutta (L.) Robs. by screening 150 randomly amplified polymorphic DNA primers and only one of them (OPBD20) showed different amplification band pattern associated with sex type. This sex-linked fragment was converted into male-specific sequence-characterized amplified region (SCAR) marker, CAM-566. The primers deigned in this study (OPBD20F and OPBD20R) correctly differentiated 12 male and 12 female plants at high annealing temperatures. Thus, a 556-bp band was amplified in male samples but not in female ones. Nevertheless, it should be noted that the fragments from both sexes were amplified at relatively low annealing temperatures. Additionally, the developed SCAR marker successfully identified the sexes of ten sex-unknown samples. Therefore, it can be used as an effective, convenient and reliable tool for sex determination in such dioecious species.     

Leaf litter of a dominant cushion plant shifts nitrogen mineralization to immobilization at high but not low temperature in an alpine meadow

Aims

We evaluated the effects of temperature and addition of leaf litter of Androsace tapete MaximWe–a dominant cushion plant species of alpine meadows on the Tibetan Plateau–on carbon (C) and nitrogen (N) mineralization, microbial biomass C (MBC) and N (MBN).

Methods

A laboratory incubation experiment with and without cushion plant litter addition was conducted for 112 days at three temperature regimes (?1, 5 and 11 °C). C and net N mineralization were simultaneously measured during the incubation period.

Results

C and N mineralization were affected by interactions between litter addition and temperature. Litter addition increased C mineralization and MBN but shifted N mineralization to immobilization at higher temperature. The positive relationship between net N mineralization and MBC and MBN was shifted to a negative one through cushion plant litter addition. Cushion plant litter also changed the relationship between C mineralization and net N mineralization from insignificantly positive to significantly negative.

Conclusions

These findings indicate that low temperature in winter could be important for alpine plants because low temperature can increase net N mineralization and supply plants with available N for their growth in the early growing season. During the growing season, climate warming–either directly through a temperature effect or indirectly through triggering increased cushion plant litter production–might lead to stronger competition for N between alpine plants and microorganisms.     

Soil bacterial communities of different natural forest types in Northeast China

Background and aims

The types of natural forests have long been suggested to shape below-ground microbial communities in forest ecosystem. However, detailed information on the impressionable bacterial groups and the potential mechanisms of these influences are still missing. The present study aims to deepen the current understanding on the soil microbial communities under four typical forest types in Northeast Asia, and to reveal the environmental factors driving the abundance, diversity and composition of soil bacterial communities.

Methods

Four forest types from Changbai Nature Reserve, representing mixed conifer-broadleaf forest and its natural secondary forest, evergreen coniferous forest, and deciduous coniferous forest were selected for this study. Namely, Broadleaf-Korean pine mixed forest (BLKP), secondary Poplar-Birch forest (PB), Spruce-Fir forest (SF), and Larch forest (LA), respectively. Soil bacterial community was analyzed using bar-coded pyrosequencing. Nonmetric multidimensional scaling (NMDS) was used to illustrate the clustering of different samples based on both Bray-Curtis distances and UniFrac distances. The relationship between environmental variables and the overall community structure was analyzed using the Mantel test.

Results

The two mixed conifer-broadleaf forests (BLKP and PB) displayed higher total soil nutrients (organic carbon, nitrogen, and phosphorus) and soil pH, but a lower C/N ratio as compared to the two coniferous forests (SF and LA). The mixed conifer-broadleaf forests had higher alpha-diversity and had distinct bacterial communities from the coniferous forests. Soil texture and pH were found as the principle factors for shaping soil bacterial diversity and community composition. The two mixed conifer-broadleaf forests were associated with higher proportion of Acidobacteria, Verrucomicrobia, Bacteroidetes, and Chloroflexi. While the SF and LA forests were dominated by Proteobacteria and Gemmatimonadetes.

Conclusions

Different natural forest type each selects for distinct microbial communities beneath them, with mixed conifer-broadleaf forests being associated with the low-activity bacterial groups, and the coniferous forests being dominated by the so-called high-activity members. The differentiation of soil bacterial communities in natural forests are presumably mediated by the differentiation in terms of soil properties, and could be partially explained by the copiotroph/oligotroph ecological classification model and non-random co-occurrence patterns.     

Biomolecules from HCN

The mechanism of the condensation of dilute aqueous solutions of HCN and the products formed by these reactions have been investigated. The initial HCN condensation reactions yield3, a compound which is readily oxidized to4. A similar oxidation of5 to6 was also observed. Urea is formed on hydrolysis of4. The oxidation-reduction products formed from HCN may be in part a consequence of the oxidation of3. It has been established by combination GC/MS that the amino acids glycine, diaminosuccinic acid, α-amino-isobutyric acid, aspartic acid, alanine and isoleucine are released on acid hydrolysis of the ‘HCN polymer’. Hydantoin (7), 5,5-dimethylhydantoin (8) and 5-carboxymethyldenehydantoin (10) are also released on acid hydrolysis of the HCN condensation products. The direct conversion of the dicarbonyl derivative, of diaminosuccinic acid to orotic acid via10 at pH 8 has been observed. This conversion suggests a direct route to pyrimidines from HCN.     

Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.)

Key message

We have identified QTLs for stomatal characteristics on chromosome II of faba bean by applying SNPs derived from M. truncatula , and have identified candidate genes within these QTLs using synteny between the two species.

Abstract

Faba bean (Vicia faba L.) is a valuable food and feed crop worldwide, but drought often limits its production, and its genome is large and poorly mapped. No information is available on the effects of genomic regions and genes on drought adaptation characters such as stomatal characteristics in this species, but the synteny between the sequenced model legume, Medicago truncatula, and faba bean can be used to identify candidate genes. A mapping population of 211 F₅ recombinant inbred lines (Mélodie/2 × ILB 938/2) were phenotyped to identify quantitative trait loci (QTL) affecting stomatal morphology and function, along with seed weight, under well-watered conditions in a climate-controlled glasshouse in 2013 and 2014. Canopy temperature (CT) was evaluated in 2013 under water-deficit (CTd). In total, 188 polymorphic single nucleotide polymorphisms (SNPs), developed from M. truncatula genome data, were assigned to nine linkage groups that covered ~928 cM of the faba bean genome with an average inter-marker distance of 5.8 cM. 15 putative QTLs were detected, of which eight (affecting stomatal density, length and conductance and CT) co-located on chromosome II, in the vicinity of a possible candidate gene—a receptor-like protein kinase found in the syntenic interval of M. truncatula chromosome IV. A ribose-phosphate pyrophosphokinase from M. truncatula chromosome V, postulated as a possible candidate gene for the QTL for CTd, was found some distance away in the same chromosome. These results demonstrate that genomic information from M. truncatula can successfully be translated to the faba bean genome.     

Soil oxidases recovered faster than hydrolases in a 50-year chronosequence of desert revegetation

Aims

Desert characterized by alkaline soil with low organic matter and nutrients has a high soil oxidative potential. We hypothesized that oxidase activities would recover faster than hydrolases during the succession of sand-fixing community.

Methods

Sand dunes stabilized in different years, including a moving sand dune and a steppe at the southeastern fringe of the Tengger Desert, were selected to investigate restoration of extracellular enzyme activities (EEAs) in a 50-year chronosequence.

Results

Oxidases showed significantly higher activities than hydrolases at all ten studied sites and EEAs exibited a decreasing trend from catalase, phenol oxidase, sucrase, urease, alkaline phosphatase, α-Amylase to cellulase. After 50 years of revegetation, most EEAs in topsoil recovered to 50–83% of that of the steppe except for urease. Oxidase activities recovered earlier and faster than hydrolases, while hydrolases activities attained the fastest recovery at 19–25 years in the 50-year chronosequence.

Conclusions

Recovery of EEAs was modulated by the succession of the sand-fixed community: oxidases activities exhibited peak recovery rates at the stage when shrubs dominated the community, while recovery of hydrolases activities appeared to be mainly regulated by biological soil crusts and annual plants.     

Lead phytoavailability change driven by its speciation transformation after the addition of tea polyphenols (TPs): Combined selective sequential extraction (SSE) and XANES analysis

Background and aims

Metal species in rhizosphere soil profoundly influence their mobility and phytoavailability. Clarifying the speciation transformation of heavy metals helps understand their translocation and accumulation in plants.

Methods

Single extraction, selective sequential extraction (SSE) and X-ray absorption near-edge structure (XANES) spectroscopy were employed to investigate the speciation transformation of lead (Pb) and its influence on metal accumulation in tea plants after the addition of tea polyphenols (TPs).

Results

Pb content was decreased in young leaves and stems, whereas increased in roots, after TPs were amended to soil. Both SSE and XANES analysis suggested bioavailable Pb was transformed to organically bound Pb after the addition of TPs. The increased percentage of organically bound Pb might be fixed in the cell wall of plant root through a ternary complex formed between the Pb-organic matter complex and cell wall components. Therefore, Pb translocation from roots to young tissues was decreased.

Conclusions

Pb phytoavailability change was driven by its speciation transformation after the addition of TPs. Combined SSE and XANES spectroscopy represent powerful tools to study metal speciation transformation in plant and soil systems.     

Variation of trace metal accumulation,major nutrient uptake and growth parameters and their correlations in 22 populations of Noccaea caerulescens

Background and aims

Noccaea caerulescens is a model plant for the understanding of trace metal accumulation and a source of cultivars for phytoextraction. The aim of this study was to investigate natural variation for trace metal accumulation, major nutrient uptake and growth parameters in 22 populations. The correlations among these traits were particularly examined to better understand the eco-physiology and the phytoextraction potential of the species.

Methods

Populations from three edaphic groups, i.e. calamine (CAL), serpentine (SERP) and non metalliferous (NMET) sites were grown in hydroponics for seven weeks at moderate trace metal exposure. Growth indicators, element contents and correlations between these variables were compared.

Results

All the phenotypic characteristics showed a wide variability among groups and populations. The SERP populations showed a smaller plant size, higher cation contents and strong correlations between all element concentrations. NMET populations did not differ in plant size from the CAL ones, but had higher Zn and Ni contents. The CAL populations showed higher Cd and Mn accumulations and lower Ca contents. The trade-off between biomass production and Cd, Ni and Zn accumulation was high in SERP populations and low in the CAL and NMET ones.

Conclusions

N. caerulescens is a genetically diverse species, showing specific features depending on the group and the population. These features may reflect the wide adaptive capacities of the species, and also reveal promising potential for phytoextraction of Cd, Ni and Zn.     

Effects of differential grazing on decomposition rate and nitrogen availability in a productive mountain grassland

Background and aims

Grazing may influence nutrient cycling in several ways. In productive mountain grasslands of central Argentina cattle grazing maintain a mosaic of different vegetation patches: lawns, grazed intensively and dominated by high quality palatable plants, and open and closed tussock grasslands dominated by less palatable species. We investigated if differences in the resources deposited on soil (litter and faeces) were associated with litter decomposition rates and soil nitrogen (N) availability across these vegetation patches.

Methods

We compared the three vegetation patches in terms of litter and faeces quality and decomposability, annual litterfall and faeces deposition rate. We determined decomposition rates of litter and faces in situ and decomposability of the same substrates in a common garden using “litter bags”. We determined soil N availability (with resin bags) in the vegetation patches. Also, we performed a common plant substrates decomposition experiment to assess the effect of soil environment on decomposition process. This technique provides important insights about the soil environmental controls of decomposition (i.e. the sum of soil physicochemical and biological properties, and microclimate), excluding the substrate quality.

Results

The litter quality and faeces deposition rate were higher in grazing lawns, but the total amounts of carbon (C) and nitrogen (N) deposited on soil were higher in tussock grasslands, due to higher litterfall in these patches. The in situ decomposition rates of litter and faeces, and of the two common plant substrates were not clearly related to either grazing pressure, litterfall or litter quality (C, N, P, lignin, cellulose or hemicellulose content). In situ litter decomposition rate and soil ammonium availability were correlated with the decomposition rates of both common plant substrates. This may suggest that difference in local soil environment among patch types is a stronger driver of decomposition rate than quality or quantity of the resource that enter the soil.

Conclusions

Our results show that, although high grazing pressure improves litter quality and increases faeces input, the reduction in biomass caused by herbivores greatly reduces C and N input for the litter decomposition pathway. We did not find an accelerated decomposition rate in grazing lawns as proposed by general models. Our results point to soil environment as a potential important control that could mask the effect of litter quality on field decomposition rates at local scale.     

Spatial distribution and turnover of root-derived carbon in alfalfa rhizosphere depending on top- and subsoil properties and mycorrhization

Aims

This study analyzed the extent to which root exudates diffuse from the root surface towards the soil depending on topsoil and subsoil properties and the effect of arbuscular mycorrhizal fungal hyphae on root-derived C distribution in the rhizosphere.

Methods

Alfalfa was grown in three-compartment pots. Nylon gauze prevented either roots alone or roots and arbuscular mycorrhizal fungal hyphae from penetrating into the rhizosphere compartments. ¹⁴CO₂ pulse labeling enabled the measurement of ¹⁴C-labeled exudates in dissolved (DOC) and total organic carbon (TOC) in the rhizosphere, distributed either by diffusion alone or by diffusion, root hair and hyphal transport.

Results

Root exudation and microbial decomposition of exudates was higher in the rhizosphere with topsoil compared to subsoil properties. Exudates extended over 28 mm (DOC) and 20 mm (TOC). Different soil properties and mycorrhization, likely caused by the low arbuscular mycorrhizal colonization of roots (13?±?4 % (topsoil properties) and 18?±?5 % (subsoil properties)), had no effect.

Conclusions

Higher microbial decomposition compensated for higher root exudation into the rhizosphere with topsoil properties, which resulted in equal exudate extent when compared to the rhizosphere with subsoil properties. Higher ¹⁴C activity used for labeling compared with previous studies enabled the detection of low exudate concentrations at longer distances from the root surface.