Distribution and environmental control of coral assemblages in northern Safaga Bay (Red Sea, Egypt)

Summary Coral assemblages in northern Safaga Bay, Red Sea, Egypt, are qualitatively described. Nine distinct assemblages were found, which correspond to quantitatively defined community types previously described from the area off Hurghada, northern Red Sea. Their distribution within northern Safaga Bay was mapped. Strong gradient and/or steep relief assemblages were:Acropora assemblage on windward (exposed) reefs,Porites assemblage on leeward (sheltered) reefs,Millepora assemblage on current exposed reefs,Stylophora assemblage on reef flats. Low gradient and/or low relief assemblages were:Acropora dominated coral patches in areas of good circulation to a depth of 15 m,Stylophora/Acropora coral patch assemblages in shallow sheltered environments, faviid carpet in low relief areas between 10 and 25 m which with increasing turbidity turns into a depauperate faviid carpet,Porites carpet in low relief areas between 5 and 15 m with clearest water,Sarcophyton carpet in low relief areas with high suspension load, platy scleractinian assemblage in deeper water (>25 m) with low light intensity. The distribution of coral assemblages depends basically on 1) topography 2) hydrodynamics 3) light and 4) suspension load.     

Bioerosion in the Miocene Reefs of the northwest Red Sea,Egypt

Macroborings provide detailed information on the bioerosion, accretion and palaeoenvironment of both modern and fossil reefs. Dolomitized reefal carbonates in the Um Mahara Formation exhibit an outstanding example of spatially distributed, well‐preserved bioerosion structures in tropical to subtropical syn‐rift Miocene reefs. Ten ichnospecies belonging to five ichnogenera are identified; three belonging to the bivalve‐boring ichnogenus Gastrochaenolites, three attributed to the sponge‐boring ichnogenus Entobia, and four ichnospecies assigned to three worm‐boring ichnogenera Trypanites, Maeandropolydora and Caulostrepsis. The distribution of the reported borings is strongly linked to the palaeo‐reef zones. Two distinctive ichnological boring assemblages are recognized. The Gastrochaenolites‐dominated assemblage reflects shallower‐marine conditions, under water depths of a few metres, mostly in back‐reef to patch‐reef zones of a back‐reef lagoon. The Entobia‐dominated assemblage signifies relatively deeper marine conditions, mostly in reef core of the fringing Miocene reefs. These ichnological assemblages are attributed herein to the Entobia sub‐ichnofacies of the Trypanites ichnofacies. This ichnofacies indicates boring in hard carbonate substrates (such as corals, rhodoliths, carbonate cements and hardgrounds) during periods of non‐sedimentation or reduced sediment input.     

Rhodolith formation induced by reef erosion in the Red Sea,Egypt

Along the northwestern margin of Safaga Island (Northern Bay of Safaga, Red Sea, Egypt) a small fringing reef (several hundred meters long, up to 2 m high) and small patch reefs are developed due to the local current regime which is favorable for coral growth. Corals and reef rock are encrusted by coralline algae, predominantly by branchedLithophyllum kotschyanum. Owing to destructional processes dominated by sea urchin activities, fragmentation of (1) corals, (2) reef rock, and (3) coralline algae takes place resulting in the formation of almost mono-specific, branchedLithophyllum kotschyanum rhodoliths. Rhodolith formation takes place in various reef environments: (1) in depressions on the reef flat where ellipsoidal rhodoliths develop, with interlocking and fusing branches leading to a coralline algal framework; (2) in discharge channels where smaller elongated rhodoliths occur; (3) in leeward positions between reef flat and seagrass meadows, where a dense belt of spheroidal to ellipsoidal rhodoliths is formed; scattered rhodoliths occur in adjacent seagrass beds. The formation and preservation of rhodoliths requires a complex interplay of destruction, growth, transportation, movement, and stabilization.     

Benthic foraminiferal associations in the Northern Bay of Safaga, Red Sea, Egypt

In the shallow-water area (0–70 m) of the Northern Bay of Safaga, 73 surface samples were studied with respect to total foraminiferal fauna. The samples cover a great variety of shallow-water environments and yielded 239 foraminiferal taxa. Based on q-mode cluster analysis, and tested by canonical discriminant analysis, the samples are grouped into 13 foraminiferal associations, each characterized by several species:

(1) Quinqueloculina mosharrafai-Borelis schlumbergeri-Brizalina simpsoni Ass.,

(2) Heterostegina depressa-Amphlstegina lessonii/bicirculata Ass.,

(3) Cibicidids-Rosalina-Amphistegina lobifera-Pseudoschlumbergerina ovata Ass.,

(4) Peneroplis planatus Ass.,

(5) Peneroplis planatus-Varidentella neostriatula Ass.,

(6) Peneroplis planatus-Coscinospira hemprichii-Varidentella neostriatula Ass.,

(7) Quinqueloculina spp. Ass.,

(8) Hauerina diversa-Sorites orbiculus Ass.,

(9) Verneuilina sp.-n Articulina pacifica-Reussella simplex Ass.,

(10) Textularia agglutinans/rugulosa-Bolivina variabilis Ass.,

(11) Textularia agglutinans-Challengerella bradyi-Elphidium jenseni/simplex Ass.,

(12) Operculina ammonoides-Adelosina laevigata-Brizalina striatula/subspathulata Ass.,

(13) Bolivina variabilis—Miliolinella-Nonion fabum-Elphidium simplex Ass.

The characteristic forms of each association are linked to specific environmental parameters and modes of life. As long as taxonomic uniformitarianism can be applied, similar associations with comparable ecological demands may also be detected in the fossil record. For comparisons with taxonomically different material the 13 associations are summarized into 4 categories each reflecting a specific type of substrate. In the fossil record these categories may be recognized by general morphological characteristics of the foraminiferal tests and by sedimentological data. The 4 substrate types are: hardground, sand (with or without seagrass and/or corals), firmground, and soft bottom.     

Coral communities and coral-bivalve associations in the northern Red Sea at Safaga,Egypt

Summary The reefs near Safaga, Egypt, are built mainly by coral species ofPorites andAcropora. These genera are in general important for the formation of coral communities and reef structures. WhileMontipora orPavona are also species rich, their mean colony size is too small for a substantial role in the build-up of carbonate mass. Yet as a host coral,Montipora is more important thanPorites; both may accommodate the pectinidPedum and certain species of mytilidLithophaga. Such associations appear to be typical for specific reef areas and to be correlated to the food supply of the bivalves. These findings can be used for an actuopaleontological interpretation of the fossil situation. In addition to the frequency of occurrence, factors such as the growth form, growth rate, skeletal density and lifespan of corals are essential in determining their share in reef construction.     

Abundance and diversity of surface zooplankton in the Gulf of Aqaba, Red Sea, Egypt

Surface zooplankton were studied in Egyptian coastal watersof the Gulf of Aqaba, from bimonthly samples from July 1994to May 1995. Species diversity, numerical abundance and dynamicswere analysed for each taxon, at six sites, inside three Protectorates.A total of 62 taxa and species were identified. At all sites,copepods were predominant in the standing crop with an averageof 1945 ind. M^–3 and formed {small tilde}75.5%, numerically,of the total zooplankton community. The meroplanktonic larvaeoccupied the second rank and they constituted {small tilde}19.7%of the total zooplankton. Seasonally, the main peak of zooplanktonabundance was recorded in winter (January) with an average of3510 ind. M^–3 while September was characterized by thelowest density (1906 ind. m^–3 The relatively higher diversityvalues were recorded at Ras Mohammed Protectorate and a progressivedecline in diversity was observed northward.     

Bivalve distribution on coral carpets in the Northern Bay of Safaga (Red Sea, Egypt) and its relation to environmental parameters

Summary Bivalve assemblages on coral carpets in the Northern Bay of Safaga do not form distinct associations, but gradually shift in faunal composition. The taxonomic shift is accompanied by continuous variations in bivalve density and percentage of living individuals as well as by a change of coral associations and potential bivalve habitats. The gradual lateral change of associations is best documented byTridacna maxima and jewel box clams (Chamoidea) and is probably due to variations of the suspension load in the water column. High suspension loads in the water column are additionally indicated by ‘giant oysters’ (extremely large individuals ofHyotissa hyotis) and striking agglomerates ofLopha cristagalli. The vertical differentiation is best documented by the decrease of the zooxanthellateTridacna maxima and is probably due to the depth-dependent light penetration in the water column, which is attenuated in areas of high suspension load.     

Symbiodiniaceae diversity of Palythoa tuberculosa in the central and southern Red Sea influenced by environmental factors

Sea surface temperatures (SST) and chlorophyll a concentrations (Chl a) in the southern Red Sea have wide variations based on distance from the coast. To understand how these variations can affect the diversity of symbionts hosted by reef-associated organisms, we conducted a study in the central and southern Red Sea to examine the diversity of Symbiodiniaceae hosted by the zooxanthellate zoantharian Palythoa tuberculosa at different distances from the coast: offshore (FBO), midshelf (FBM) and inshore (FBI) of Farasan Banks, and inshore at Thuwal (TI). Genomic DNA was extracted from 198 specimens, followed by amplification of the ribosomal DNA internal transcribed spacer 2 (ITS-2) and noncoding region of the chloroplast plastid minicircle (psbA^ncr). Durusdinium and six lineages of Cladocopium (Pt-1-a, Pt-1-b, Pt-1-c, Pt-1-d, Pt-3-a, Pt-3-b) were identified based on sequences of the two marker regions. Changes in composition of Symbiodiniaceae lineages were observed from FBI (high SST, high Chl a) to FBO (low SST, low Chl a). Molecular variance analyses showed that distance from coast was the most likely predictor of differences in Cladocopium lineages. Multinomial logistic regression analysis showed a transition among different Cladocopium lineages as SST increased. One Cladocopium lineage, Pt-1-b, demonstrated higher prevalences at high SSTs and increased in prevalences at the same rate as thermotolerant Durusdinium. Additionally, Cladocopium lineage Pt-3-a had a high affinity to low Chl a concentrations. This study demonstrates that environmental variations in SSTs and Chl a concentrations are significant predictors for the diversity of dominant Symbiodiniaceae within individual host P. tuberculosa colonies. We theorize that flexibility with different lineages of Symbiodiniaceae allows generalist P. tuberculosa to live across a wide range of environments in the southern Red Sea.

     

Antitumour and antioxidant activity of some Red Sea seaweeds in Ehrlich ascites carcinoma in vivo

The antitumour activities of extracts from the Red Sea seaweeds Jania rubens, Sargassum subrepandum, and Ulva lactuca were investigated in an in vivo mice model based on intramuscular injection of Ehrlich ascites tumour cells. In parallel, antioxidant activities were measured. Tumour marker levels, liver biochemical parameters, and hepatic oxidant/antioxidant status were measured to prove the anticancer and antioxidant nature of the algal extracts. Significant decreases in carcinoembryonic antigen (CEA) and a-fetoprotein (AFP) levels, activities of liver enzymes, levels of nitric oxide (NO) and malondialdehyde (MDA), and an increase in total antioxidant capacity (TAC) were recorded in groups treated with the algal extracts. Jania rubens was selected for phytochemical screening of its phytoconstituents. In addition, carotenoids, halides, minerals, lipoidal matters, proteins, and carbohydrates were studied. Furthermore, 7-oxo-cholest-5(6)-en-3-ol (1) and cholesterol (2) were isolated from the dichloromethane fraction.     

Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees

Understanding how fungal endophyte communities differ in abundance, diversity, taxonomic composition, and host affinity over the geographic ranges of their hosts is key to understanding the ecology and evolutionary context of endophyte–plant associations. We examined endophytes associated with healthy photosynthetic tissues of three closely related tree species in the Cupressaceae (Coniferales): two native species within their natural ranges [Juniperus virginiana in a mesic semideciduous forest, North Carolina (NC); Cupressus arizonica, under xeric conditions, Arizona (AZ)], and a non-native species planted in each site (Platycladus orientalis). Endophytes were recovered from 229 of 960 tissue segments and represented at least 35 species of Ascomycota. Isolation frequency was more than threefold greater for plants in NC than in AZ, and was 2.5 (AZ) to four (NC) times greater for non-native Platycladus than for Cupressus or Juniperus. Analyses of ITS rDNA for 109 representative isolates showed that endophyte diversity was more than twofold greater in NC than in AZ, and that endophytes recovered in AZ were more likely to be host-generalists relative to those in NC. Different endophyte genera dominated the assemblages of each host species/locality combination, but in both localities, Platycladus harboured less diverse and more cosmopolitan endophytes than did either native host. Parsimony and Bayesian analyses for four classes of Ascomycota (Dothideomycetes, Sordariomycetes, Pezizomycetes, Eurotiomycetes) based on LSU rDNA data (ca 1.2 kb) showed that well-supported clades of endophytes frequently contained representatives of a single locality or host species, underscoring the importance of both geography and host identity in shaping a given plant's endophyte community. Together, our data show that not only do the abundance, diversity, and taxonomic composition of endophyte communities differ as a function of host identity and locality, but that host affinities of those communities are variable as well.     

Bryozoa from northern Red Sea,Egypt: 1 Crisia (Cyclostomata)

Seventy-five bryozoan species were picked from shallow bottom sediments (0–33 m depths) at five sites in the northern Red Sea: El Fanader, Hurghada Harbour, Makkadi Bay, Al Qweh Lagoon and El-Humrawen. Crisia specimens (Cyclostomata) are common and exhibit different variations. Six species were recognised among the specimens collected: Crisia eburnea (Linnaeus), Crisia elongata (Milne-Edwards), Crisia hornesi Reuss, Crisia sertularoides (Audouin), Crisia tenuis MacGillivray and Crisia hurghadaensis n. sp. The present paper deals with these Crisia species; other bryozoan taxa recovered will be published later. Biogeographic study reveals that three of these species are cosmopolitan, and represented by common to abundant occurrences (C. elongata, C. eburnea and C. hornesi). Two species are local endemics, and represented by only rare occurrences (C. sertularoides and C. hurghadaensis n. sp.). One species (C. tenuis) is Indo-Pacific, and is recorded here for the first time in equatorial waters.     

Environment and host species identity shape gut microbiota diversity in sympatric herbivorous mammals

The previous studies have reported that the mammalian gut microbiota is a physiological consequence; nonetheless, the factors influencing its composition and function remain unclear. In this study, to evaluate the contributions of the host and environment to the gut microbiota, we conducted a sequencing analysis of 16S rDNA and shotgun metagenomic DNA from plateau pikas and yaks, two sympatric herbivorous mammals, and further compared the sequences in summer and winter. The results revealed that both pikas and yaks harboured considerably more distinct communities between summer and winter. We detected the over-representation of Verrucomicrobia and Proteobacteria in pikas, and Archaea and Bacteroidetes in yaks. Firmicutes and Actinobacteria, associated with energy-efficient acquisition, significantly enriched in winter. The diversity of the microbial community was determined by the interactive effects between the host and season. Metagenomic analysis revealed that methane-metabolism-related pathway of yaks was significantly enriched in summer, while some pathogenic pathways were more abundant in pikas. Both pikas and yaks had a higher capacity for lipid degradation in winter. Pika and yak shared more OTUs when food shortage occurred in winter, and this caused a convergence in gut microbial composition and function. From winter to summer, the network module number increased from one to five in pikas, which was different in yaks. Our study demonstrates that the host is a dominant factor in shaping the microbial communities and that seasonality promotes divergence or convergence based on dietary quality across host species identity.     

Population status of giant clams (Mollusca: Tridacnidae) in the northern Red Sea,Egypt

Throughout their range, giant clams (family Tridacnidae) are increasingly threatened by anthropogenic impacts and natural disasters, but little is known about their population status. In this first assessment of the tridacnid population at Abu Sauatir in the northern Red Sea, a total of 491 m² were surveyed and >200 clams recorded. Tridacna maxima was the only species found. The population's live:dead ratio was 3:1. Overall clam density was 0.08?±?0.008 live and 0.02?±?0.007 dead individuals per 0.25 m². Greatest densities occurred on the reef flat in 1 m depth (live), and on the northern reef slope in deeper waters (dead). On the slope, live clam density decreased significantly, whereas dead clam density increased significantly with depth. Sizes of live and dead individuals differed significantly. Live clams ranged from 1 to 30 cm (median 5 cm). Juveniles ≤2 cm (8.2% of the population) and individuals >11 cm occurred on the reef slope but not on the reef flat. Live clam sizes did not differ significantly between reef sites. Dead clam size ranged from 2 to 15 cm (median 6.5 cm). 2.1% of the empty shells were ≤2 cm long. Dead clam sizes differed significantly between 5 and 10 m depth on the northern reef slope. The low clam abundance (live and dead) in the shallowest and most easily accessible areas of the reef flat, combined with small sizes, strongly suggest artisanal reef-top gathering for meat and shells.     

中国农业环境效率时空演变及其驱动因素

农业环境效率是衡量经济与资源环境协调发展的重要指标,研究农业环境效率对实现农业资源的高效率利用具有重要意义。基于2004-2019年中国30个省（市、区）面板数据,运用SBM （Slacks-based model）模型、空间马尔科夫链、GIS技术和空间计量模型,分析了农业环境效率的时空演变特征,研究了农业环境效率变动的驱动因素。结果表明：（1）2004-2019年,考虑非期望产出的农业环境效率要低于不考虑非期望产出情况,呈持续上升趋势;区域差异整体呈倒"V "型变化趋势,东西方向上递减,南北方向上呈" U"型趋势特征。（2）中国不同等级的农业环境效率空间差异明显,地理空间格局在空间演变过程具有重要作用,空间关联性特征显著,不同类型的演变存在显著的时空惯性。（3）中国农业环境效率存在空间溢出效应,农业经济水平、环境规制、农业生产能力是提升农业环境效率的关键因素,财政支农水平、工业化水平、农作物种植结构、农业机械强度则是制约效率提升的约束要素。     

Environment and diagenesis of an Upper Cretaceous bioclastic oyster limestone bed,Red Sea Coast,Egypt

Summary An Upper Cretaceous bioclastic oyster limestone bed, exposed at the Red Sea coastal strip, has been investigated for its depositional environment and the early diagenetic modifications affecting its components. The deposition of this stratum body marks the end of prevailed euxinic conditions and the setting up of an oxic milieu. This dramatic change in depositional conditions is related primarily to the change in the position of oxygen minimum zone during sedimentation. The noticeable negative shift in the δ¹⁸O-values of the studied skeletal parts (−2.7 to −6.4‰ PDB) are attributed to some habitat-related controls and the dilution of marine water with a great fresh water influx. In addition, mild diagenetic alterations that have affected some of these skeletals, as indicated by their enriched manganese values and orange-colored luminescence, are also- in part-responsible for the δ¹⁸O negative shift. Meanwhile, the negative δ¹³C signatures (−2.2 to −5.6‰ PDB) are probably related to an upward flux of isotopically-light and reduced pore waters to the bottom water where the oysters are thought to have lived and/or to the reducing conditions during which the alteration of these skeletals occurred. Moldic porosity is quite common although partly or completely occluded by clear equant low-Mg calcite of marine origin. These submarine mosaics are probably formed under oxidizing conditions in the phreatic zone as indicated from their non-luminescence character and stable isotopic values. The wide overlap range between the oxygen and carbon stable isotopic signatures of these mosaics and the skeletal particles may indicate they both are formed under the same conditions provided little effect exerted by the latters. A promising possibility of hydrocarbon accumulations in the area east of Qusier (off shore) is expected.     

Relocation,high‐latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

Micro‐organisms associated with plants and animals affect host fitness, shape community structure and influence ecosystem properties. Climate change is expected to influence microbial communities, but their reactions are not well understood. Host‐associated micro‐organisms are influenced by the climate reactions of their hosts, which may undergo range shifts due to climatic niche tracking, or may be actively relocated to mitigate the effects of climate change. We used a common‐garden experiment and rDNA metabarcoding to examine the effect of host relocation and high‐latitude warming on the complex fungal endophytic microbiome associated with leaves of an ecologically dominant boreal forest tree (Populus balsamifera L.). We also considered the potential effects of poplar genetic identity in defining the reactions of the microbiome to the treatments. The relocation of hosts to the north increased the diversity of the microbiome and influenced its structure, with results indicating enemy release from plausible pathogens. High‐latitude warming decreased microbiome diversity in comparison with natural northern conditions. The warming also caused structural changes, which made the fungal communities distinct in comparison with both low‐latitude and high‐latitude natural communities, and increased the abundance of plausible pathogens. The reactions of the microbiome to relocation and warming were strongly dependent on host genetic identity. This suggests that climate change effects on host–microbiome systems may be mediated by the interaction of environmental factors and the population genetic processes of the hosts.     

Plant diversity and community structure of Wadi Gimal protected area,Red Sea Coast of Egypt

The present study deals with the analysis of the floristic composition and plant diversity of Wadi Gimal protectorate. Its major aim is to identify community types and environmental factors that affect their growth and distribution. These quantitative data provide rangers with knowledge that is necessary for monitoring and managing plant communities within the protected areas, as well as restoration of vegetation‐depleted habitats. Twenty‐seven stands were selected along the length of Wadi and its tributaries. Thirty‐five species were recorded in Wadi Gimal; with Poaceae as the dominant family and Phanerophytes dominating over other life forms. Saharo‐Arabians were the predominant chorological element. Six vegetation groups were recognized in Wadi Gimal. Zilla spinosa (VG C) which inhabited the Wadi bed had the highest species richness, species turnover, relative evenness and relative concentration of dominance. Capparis sinaica (VG A) which inhabited the mountain slope had the lowest species richness, relative evenness and relative concentration of dominance, while Salvadora persica group had the lowest species turnover. Phoenix dactylifera–Hyphaene thebaica (VG F) which dominated the deltaic part of Wadi, had the highest salinity; whilst Acacia ehrenbergiana (VG E) which dominated the upper‐stream part of the Wadi had the lowest value of salinity.     

Susceptibility to Phytophthora ramorum in a key infectious host: landscape variation in host genotype, host phenotype, and environmental factors

Sudden oak death is an emerging forest disease caused by the invasive pathogen Phytophthora ramorum. Genetic and environmental factors affecting susceptibility to P. ramorum in the key inoculum-producing host tree Umbellularia californica (bay laurel) were examined across a heterogeneous landscape in California, USA. Laboratory susceptibility trials were conducted on detached leaves and assessed field disease levels for 97 host trees from 12 225-m(2) plots. Genotype and phenotype characteristics were assessed for each tree. Effects of plot-level environmental conditions (understory microclimate, amount of solar radiation and topographic moisture potential) on disease expression were also evaluated. Susceptibility varied significantly among U. californica trees, with a fivefold difference in leaf lesion size. Lesion size was positively related to leaf area, but not to other phenotypic traits or to field disease level. Genetic diversity was structured at three spatial scales, but primarily among individuals within plots. Lesion size was significantly related to amplified fragment length polymorphism (AFLP) markers, but local environment explained most variation in field disease level. Thus, substantial genetic variation in susceptibility to P. ramorum occurs in its principal foliar host U. californica, but local environment mediates expression of susceptibility in nature.     

Leaf shape: genetic controls and environmental factors

In recent years, many genes have been identified that are involved in the developmental processes of leaf morphogenesis. Here, I review the mechanisms of leaf shape control in a model plant, Arabidopsis thaliana, focusing on genes that fulfill special roles in leaf development. The lateral, two-dimensional expansion of leaf blades is highly dependent on the determination of the dorsoventrality of the primordia, a defining characteristic of leaves. Having a determinate fate is also a characteristic feature of leaves and is controlled by many factors. Lateral expansion is not only controlled by general regulators of cell cycling, but also by the multi-level regulation of meristematic activities, e.g., specific control of cell proliferation in the leaf-length direction, in leaf margins and in parenchymatous cells. In collaboration with the polarized control of leaf cell elongation, these redundant and specialized regulating systems for cell cycling in leaf lamina may realize the elegantly smooth, flat structure of leaves. The unified, flat shape of leaves is also dependent on the fine integration of cell proliferation and cell enlargement. Interestingly, while a decrease in the number of cells in leaf primordia can trigger a cell volume increase, an increase in the number of cells does not trigger a cell volume decrease. This phenomenon is termed compensation and suggests the existence of some systems for integration between cell cycling and cell enlargement in leaf primordia via cell-cell communication. The environmental adjustment of leaf expansion to light conditions and gravity is also summarized.