A global phylogeny of apple snails: Gondwanan origin, generic relationships, and the influence of outgroup choice (Caenogastropoda: Ampullariidae)

Apple snails (Ampullariidae) are a diverse family of pantropical freshwater snails and an important evolutionary link to the common ancestor of the largest group of living gastropods, the Caenogastropoda. A clear understanding of relationships within the Ampullariidae, and identification of their sister taxon, is therefore important for interpreting gastropod evolution in general. Unfortunately, the overall pattern has been clouded by confused systematics within the family and equivocal results regarding the family's sister group relationships. To clarify the relationships among ampullariid genera and to evaluate the influence of including or excluding possible sister taxa, we used data from five genes, three nuclear and two mitochondrial, from representatives of all nine extant ampullariid genera, and species of Viviparidae, Cyclophoridae, and Campanilidae, to reconstruct the phylogeny of apple snails, and determine their affinities to these possible sister groups. The results obtained indicate that the Old and New World ampullariids are reciprocally monophyletic with probable Gondwanan origins. All four Old World genera, Afropomus, Saulea, Pila, and Lanistes, were recovered as monophyletic, but only Asolene, Felipponea, and Pomella were monophyletic among the five New World genera, with Marisa paraphyletic and Pomacea polyphyletic. Estimates of divergence times among New World taxa suggest that diversification began shortly after the separation of Africa and South America and has probably been influenced by hydrogeological events over the last 90 Myr. The sister group of the Ampullariidae remains unresolved, but analyses omitting certain outgroup taxa suggest the need for dense taxonomic sampling to increase phylogenetic accuracy within the ingroup. The results obtained also indicate that defining the sister group of the Ampullariidae and clarifying relationships among basal caenogastropods will require increased taxon sampling within these four families, and synthesis of both morphological and molecular data. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 61–76.     

Ecological patterns in theBromeliaceae of the lomas formations of Coastal Chile and Peru

Studies of geographic distribution and physiological adaptations in theBromeliaceae of coastal Chile and Peru provide insights into the ecological patterns of habit selection and speciation. The hyperarid coastal Atacama and Peruvian Deserts along the Pacific coast of South America contain a surprisingly rich flora of bromeliad species. These include representatives of all threeBromeliaceae subfamilies: two terrestrialBromelioideae and two terrestialPitcairnioideae, all with rooted growth morphologies, and 14 species ofTillandsioideae (allTillandsia) with epiphytic and unrooted, terrestraial representatives. TheBromelioideae are represented by two species ofPuya Molina, one each in Peru and Chile. ThePitcairnioideae are represented by two genera,Deuterocohnia andPitcairnia, with one species each. The 14Tillandsia species are distributed in five subgenera which have successfully invaded the coastal deserts, and include both widespread and local endemics with xeromorphic adaptations. All theTillandsia species are epiphytic in the broad sense, but in addition to growing on plants, they are found growing on rocks (i.e. saxicolous or epilithic). Six species (T. purpurea, T. latifolia, T. capillaris, T. marconae, T. werdermanii, andT. landbeckii) have evolved a highly specialized substrate ecology where they grow essentially unrooted on sand (i.e. epiarenic). Nowhere in the world are bromeliads more dominant or have more biomass than in these coastal species growing on sand. Many of these species grow at the absolute limits of vascular plant tolerance, with the entire community consisting of a singleTillandsia species. Rooted, terrestrial bromeliads in the coastal lomas formations (allPitcairnioideae) include CAM, C₃, and C₃-CAM flexible taxa in their metabolic systems, the CAM species growing in the most arid sites along the coast and C₃ species growing in the most mesic habitats within the center of the coastal fog belt where fog moisture input is highest. All of the epiphyticTillandsia species of the coastal desert region utilize CAM metabolism entirely or in part. At least two species,T. latifolia andT. tragophoba, utilize a flexible C₃-CAM mode of carbon fixation. Whereas most of the desert-inhabitingTillandsia species have relatively narrow leaves covered by water absorbing trichomes on their surface,T. multiflora in northern Peru andT. tragophoba in northern Chile are tank-forming species where the bases of the leaves form a water-containing reservoir. The occurrence of the latter as a local endemic in hyperarid northern Chile is remarkable since it occurs thousands of kilometers south of its closest potential relatives in the central Andes.     

Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences

Sequence data for two segments of 28S and Histone H3 from 36 gastropod taxa, a chiton, two bivalves and Nautilus are used to test recently published morphology‐based phylogenetic hypotheses of gastropod relationships. Statistical results suggest that the accuracy of the available hypotheses could be improved. The data support the monophyly of the Patellogastropoda (true limpets), Euthyneura and the ‘higher’ vetigastropods and the polyphyly of the ‘Cocculiniformia’. The division of the gastropods into two major clades (Eogastropoda and Orthogastropoda) as has been proposed on morphological grounds is not supported, and neither the Caenogastropoda nor Heterobranchia is well supported. Within the Euthyneura, opisthobranchs are paraphyletic with respect to the pulmonates. The hot vent taxon, Depressigyra, groups with the lower vetigastropod Pleurotomaria in some analyses. Much of the variability in the 28S rDNA segments lies in discrete areas of the sequence. Forone of the segments, corresponding to positions 691–942 of the mosquito Aedes albopictus 28S sequence, the variable regions represent known expansion regions (D4 and D5). For the other segment, corresponding to positions 2259–2538 of the A. albopictus sequence, the variable area, which is found in the patellogastropods, vetigastropods and Nautilus, represents an unreported expansion region. The data show marked variability in the rate of evolution in both segments of the 28S rDNA, whether or not the expansion regions are included. The variability is largely clade specific. Rates are high in the patellogastropods, vetigastropods, the lower heterobranch ‘Heterostropha’ (Cornirostra and Philippea), Depressigyra and the deep sea cocculinid limpet Coccopigya and substantially lower in other taxa. Rate variation in the histone H3 data is less extreme. The correlation between evolutionary rates in the two 28S rDNA segments is very high, andis also significant for the the pairing of each of the 28S rDNA segments with H3. The rate variability may be due to differential selection but no causative factor has been identified. The histone H3 data have high codon usage bias. For all amino acids encoded by multiple codons, at least some triplets occur at a frequency of less than a quarter of their expected usage. For all three‐, four‐and sixfold degenerate amino acids, the most abundant triplet occurs at least twice as frequently as expected. Despite the usage bias, there is a large amount of apparent homoplasy in synonymous alternatives at both the first and third codon positions.     

Some heterostrophic gastropods from Triassic St. Cassian Formation with a discussion on the classification of the Allogastropoda

Fifteen species of Heterostropha are described, 12 of them for the first time. All are newly interpreted with regard to their taxonomic relation to fossil and living gastropods. The Streptacidoidea with long Paleozoic history are represented in the Late Triassic St. Cassian Formation by several genera that can be differentiated into four families. The Ebalidae are represented byEbala, with smooth protoconch, Cassianebalidae byCassianebala andLoxebala with axially ornamented protoconch. The Donaldinidae of St. Cassian are represented by one species ofDonaldina and two ofNeodonaldina that stand in the continuation of Paleozoic species ofDonaldina. Architectonicoidea with shells coiled in a plane and Valvatoidea appear in the St. Cassian fauna without known Paleozoic relation. In the former superfamily the Architectonicidae can be recognized in the genusRinaldoconchus with two species. Cassianaxidae withCassianaxis, Amphitomariidae withAmphitomaria, Stuoraxidae withStuoraxis andAmpezzogyra have a sinistral protoconch and planispirally coiled dextral teleconchs. They all resemble different modern species that have similarly small shells. Modern Hyalogyrinidae have withAlexogyra a new representative from the Triassic. The Valvatoidea are represented with the generaCarboninia andBandellina of the Cornirostridae in the Triassic representatives. The relation of described species in the system of the Heterostropha is discussed.     

DNA-based identification of an echinoderm host for a deep-sea parasitic snail (Gastropoda: Eulimidae)

Eulimid gastropods (Caenogastropoda: Vanikoroidea) are exclusive parasites of echinoderms including all five classes of the phylum. However, many species have a long autonomous period and some tend to fall off the host during collection. This may result in a lack of host information for taxa, particularly those from the deep sea. The present study represents the first attempt to analyse the possible remains of host DNA in eulimid snails for a better understanding of their parasitic ecology. DNA extraction from the proboscis, polymerase chain reaction (PCR) with echinoderm-specific primers and sequencing of subclones successfully identified the ‘sea pig’, a holothurian of the genus Scotoplanes (Elasipodida: Elpidiidae) as the previously unknown host of Crinolamia sp. from bathyal depths off northern Japan. The morphological similarity between this eulimid and the type species of Crinolamia questions the alleged association of the latter with crinoids.     

A phylogeny of Vetigastropoda and other “archaeogastropods”: re-organizing old gastropod clades

Abstract. The phylogenetic relationships among the “archaeogastropod” clades Patellogastropoda, Vetigastropoda, Neritimorpha, and Neomphalina are uncertain; the phylogenetic placement of these clades varies across different analyses, and particularly among those using morphological characteristics and those relying on molecular data. This study explores the relationships among these groups using a combined analysis with seven molecular loci (18S rRNA, 28S rRNA, histone H3, 16S rRNA, cytochrome c oxidase subunit I [COI], myosin heavy-chain type II, and elongation factor-1α [EF-1α]) sequenced for 31 ingroup taxa and eight outgroup taxa. The deep evolutionary splits among these groups have made resolution of stable relationships difficult, and so EF-1α and myosin are used in an attempt to re-examine these ancient radiation events. Three phylogenetic analyses were performed utilizing all seven genes: a single-step direct optimization analysis using parsimony, and two-step approaches using parsimony and maximum likelihood. A single-step direct optimization parsimony analysis was also performed using only five molecular loci (18S rRNA, 28S rRNA, histone H3, 16S rRNA, and COI) in order to determine the utility of EF-1α and myosin in resolving deep relationships. In the likelihood and POY optimal phylogenetic analyses, Gastropoda, Caenogastropoda, Neritimorpha, Neomphalina, and Patellogastropoda were monophyletic. Additionally, Neomphalina and Pleurotomariidae fell outside the remaining vetigastropods, indicating the need for further investigation into the relationship of these groups with other gastropods.     

Erecting a new family for Spirostyliferina,a truncatelloidean microgastropod,and further insights into truncatelloidean phylogeny

Microgastropods in the subclass Caenogastropoda are diverse and species‐rich and often exhibit similar morphologies across families, posing difficulties for species identification. Spirostyliferina Bandel, 2006 is a microgastropod genus that has been placed in the family Litiopidae associated with algae and seagrass across the tropical Indo‐Pacific and with only one known member to date (Spirostyliferina lizardensis Bandel, 2006). There are uncertainties surrounding the familial assignment of Spirostyliferina however, due to its unique shell with spiral zigzag ridges, unique pitted protoconch and a lack of molecular data for phylogenetic analysis. This study aims to resolve the position of Spirostyliferina within the Caenogastropoda by employing a multilocus data set for phylogenetic reconstruction, and scanning electron microscopy and micro‐computed tomography for morphological analysis. Maximum likelihood and Bayesian phylogenies of 56 species, 30 families and six superfamilies of Caenogastropoda recovered Spirostyliferina within the Truncatelloidea. Spirostyliferina had no affinity with any existing truncatelloidean families, and therefore, the family Spirostyliferinidae fam. nov. is proposed for this genus. The genus Hoenselaaria Moolenbeek, 2009 was synonymized with Spirostyliferina in this study (monotypic Hoenselaaria wareni Moolenbeek, 2009). Spirostyliferinidae is diagnosed by heavy pitted microsculpture on protoconch I and intermittent spiral zigzag ridges on the teleoconch. The unpegged corneous operculum and taenioglossate radula of Spirostyliferina appear similar to other truncatelloideans, confirming the position of Spirostyliferina as a monotypic clade within the Truncatelloidea. In all, this study advances the taxonomic status of a microgastropod with a minute size and rarity that presents significant challenges to its collection and study.     

Evolutionary insights into the North American Necturus beyeri complex (Amphibia: Caudata) based on molecular genetic and morphological analyses

Necturus beyeri (Caudata: Proteidae), as conceived by some, contains paedomorphic salamanders distributed from the Ochlockonee drainage of Florida to the Angelina drainage of Texas. Because these salamanders differ in color pattern and karyotype across their geographic range, we performed a phylogeographic analysis that included representatives from all major drainages as well as of all congeners. The mitochondrially encoded ND2 gene was used to infer phylogenetic relationships using Bayesian inference. Morphometrics of head shape were analyzed and included as an independent data set. Our work suggests that Necturus comprises 11 lineages. A basal split within the genus separates an ancestor of two Atlantic Coastal Plain species (Necturus lewisi and Necturus punctatus) from the ancestor of nine distinct Gulf Coastal Plain lineages. One lineage is consistent with Necturus alabamensis, a species currently recognized in the Black Warrior drainage of Alabama. Two lineages comprise Necturus maculosus, as historically recognized, and six lineages comprise N. beyeri, as recognized by some, each of which occupies a unique drainage. Both of these species are demonstrated to be paraphyletic. Head morphometrics show the same patterns as the mtDNA. Overall, lineages within Necturus exhibit an east‐to‐west progression of appearance on the phylogenetic trees. This pattern corroborates biogeographic hypotheses based on previous karyological work. Within N. beyeri, this progression separates a pattern class of two eastern lineages lacking bold spotting and possessing relatively small mean body lengths from a pattern class of four western lineages possessing bold spotting and larger mean body sizes. Thus, the two eastern lineages of N. beyeri are similar in color pattern and body size to N. punctatus either through retention of the ancestral color pattern and size for the genus or through convergent selection in eastern streams of the Gulf Coastal Plain.     

A molecular phylogeny of antarctic chironomidae and its implications for biogeographical history

The chironomid midges Belgica antarctica, Eretmoptera murphyi (subfamily Orthocladiinae) and Parochlus steinenii (subfamily Podonominae), are the only Diptera species currently found in Antarctica. The relationships between these species and a range of further taxa of Chironomidae were examined by sequencing domains 1 and 3–5 of 28S ribosomal RNA. The resulting molecular relationships between B. antarctica and E. murphyi, within Orthocladiinae, were highly supported by validation analyses, confirming their position within Chironomidae, as generated by classical taxonomy. Within Podonominae, P. steinenii from the Maritime Antarctic was more closely related to material from sub-Antarctic South Georgia than to material from Patagonia. Taking advantage of the availability of a molecular substitution rate calculated for this gene in Diptera, a dating of divergence between our study taxa was tentatively established. The divergence dates obtained were 49 million years (Myr), between B. antarctica and E. murphyi, and 68.5 Myr between these species and the closest Orthocladiinae taxon tested from Patagonia, suggesting that B. antarctica and E. murphyi were representatives of an ancient lineage. As both are endemic to their respective tectonic microplates, their contemporary distribution is, therefore, likely to have been shaped by vicariance rather than dispersal.     

Battenizyga, a new Early Triassic gastropod genus with a discussion of the caenogastropod evolution at the Permian/Triassic boundary

Battenizyga, a new Early Triassic gastropod genus from the Moenkopi Formation of Utah, is described and the speciesAnoptychia eotriassica Batten & Stokes, 1986 is placed in it. The new genus has an axially ribbed planktonic larval shell and a teleoconch with an angulated periphery. This character combination is unknown from the Palaeozoic. Therefore,Battenizyga represents additional evidence that recovery from the end-Permian mass extinction was connected with a faunal turnover. Additionally, the extinction of diverse Palaeozoic groups of the Caenogastropoda in the Permian (e.g., the Pseudozygopleuridae) suggest a turnover. All caenogastropod genera that hold Early Triassic species, have post-Palaeozoic type species and most were not reported from the Palaeozoic. This corroborates the view that there was an intense faunal turnover within the Caenogastropoda.Battenizyga is probably a caenogastropod that is closely related to the superfamily Zygopleuroidea which is abundant in the late Palaeozoic and early Mesozoic.      

Dynamical study,hydrogen bond analysis,and constant pH simulations of the beta carbonic anhydrase of Methanobacterium thermoautotrophicum

Within the five classes (α, β, γ, δ, and ζ) of carbonic anhydrases (CAs) the first two, containing mammal and plant representatives, are the most studied among all CAs. In this study, we have focused our investigation on the beta-class carbonic anhydrase of Methanobacterium thermoautotrophicum. We investigated both the importance of the Asp-Arg dyad near the catalytic zinc-bound water and the possible roles that water molecules within the active site and residues near the entrance of the catalytic cleft have on the first step of the enzyme’s reaction mechanism. Hydrogen-bonding analysis of selected residues within the active site and constant pH replica exchange molecular dynamics constant pH replica exchange simulations were performed. The latter was done in order to evaluate the pK_a values of possible proton acceptors. We found an intricate hydrogen-bonding network involving two acidic residues within the active site, Asp16 and Asp34, and the catalytic water molecule. We also observed a very strong interaction between the zinc-bound water and residues Asp34 and Arg36. This interaction was not significantly affected by the change in the protonation state of both the catalytic water and aspartate residue 34. The pK_a analysis show that the effect of the R36A mutation affects not only the possible proton acceptors, but also the catalytic water itself.     

Interactive 3D anatomy and affinities of the Hyalogyrinidae,basal Heterobranchia (Gastropoda) with a rhipidoglossate radula

Whereas Hyalogyrina Marshall, 1988 was originally considered a skeneid vetigastropod, the family Hyalogyrinidae Warén & Bouchet, 1993 has later been classified as basal Heterobranchia despite their rhipidoglossate radula. In order to evaluate this placement and to shed more light on the origin of all higher Gastropoda, we investigated five representatives of all three nominal hyalogyrinid genera by means of semithin serial sectioning and computer-aided 3D reconstruction of the respective anatomy, which we present in an interactive way. In general the morphological features (shell, external morphology, anatomy) fully confirm the placement of Hyalogyrinidae in the Heterobranchia, but in particular the conditions of the genital system vary substantially within the family. The ectobranch gill of Hyalogyrinidae is shared with Valvatidae, Cornirostridae, and Xylodisculidae; consequently all these families are united in Ectobranchia Fischer, 1884. The rhipidoglossate hyalogyrinid radula suggests independent acquisition of taenioglossate radulae in the Caenogastropoda and other Ectobranchia. Therefore, the origin of the Heterobranchia—and thus of all higher gastropods—looks to have taken place already on the rhipidoglossate, i.e. the ‘archaeogastropod’, level of evolution. Ectobranchia are considered the first extant offshoot of the Heterobranchia; implications for the stem species of the latter are outlined.     

Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees

Understanding how fungal endophyte communities differ in abundance, diversity, taxonomic composition, and host affinity over the geographic ranges of their hosts is key to understanding the ecology and evolutionary context of endophyte–plant associations. We examined endophytes associated with healthy photosynthetic tissues of three closely related tree species in the Cupressaceae (Coniferales): two native species within their natural ranges [Juniperus virginiana in a mesic semideciduous forest, North Carolina (NC); Cupressus arizonica, under xeric conditions, Arizona (AZ)], and a non-native species planted in each site (Platycladus orientalis). Endophytes were recovered from 229 of 960 tissue segments and represented at least 35 species of Ascomycota. Isolation frequency was more than threefold greater for plants in NC than in AZ, and was 2.5 (AZ) to four (NC) times greater for non-native Platycladus than for Cupressus or Juniperus. Analyses of ITS rDNA for 109 representative isolates showed that endophyte diversity was more than twofold greater in NC than in AZ, and that endophytes recovered in AZ were more likely to be host-generalists relative to those in NC. Different endophyte genera dominated the assemblages of each host species/locality combination, but in both localities, Platycladus harboured less diverse and more cosmopolitan endophytes than did either native host. Parsimony and Bayesian analyses for four classes of Ascomycota (Dothideomycetes, Sordariomycetes, Pezizomycetes, Eurotiomycetes) based on LSU rDNA data (ca 1.2 kb) showed that well-supported clades of endophytes frequently contained representatives of a single locality or host species, underscoring the importance of both geography and host identity in shaping a given plant's endophyte community. Together, our data show that not only do the abundance, diversity, and taxonomic composition of endophyte communities differ as a function of host identity and locality, but that host affinities of those communities are variable as well.     

Molecular phylogeny and biogeography of Honey‐buzzards (genera Pernis and Henicopernis)

A partial sequence of the cytb gene (382 bp) was amplified and sequenced from 35 individuals (mainly museum specimens) of the genus Pernis representing all valid taxa (10) and two taxa (P. p. gurneyi, P. p. japonicus) with questionable validity as well as representatives of the Old World Perninae, namely Henicopernis and Aviceda, to assess their relationships to the genus Pernis. Furthermore, Gypaetus barbatus, Neophron percnopterus, and Buteo buteo were included as outgroup taxa. In the trees derived from the sequence data, Aviceda represents the sister group of the genus Pernis. The genus Henicopernis and the Old World vultures Gypaetus andNeophron appear rather distantly related to Pernis. Within the genus Pernis, two of the described species (Pernis apivorus, Pernis ptilorhyncus) form monophyletic groups, whereas the relationships of the two clades representing three subspecies of Pernis celebensis are still uncertain. Although this study is based on comparatively short DNA‐sections, the trees deduced from these sequences can be considered as a first approach for inferring the phylogenetic relationships of the genus Pernis and related genera and for addressing questions concerning the evolutionary history, biogeography, and systematics of this group.     

Larval ecology and morphology in fossil gastropods

The shell of marine gastropods conserves and reflects early ontogeny, including embryonic and larval stages, to a high degree when compared with other marine invertebrates. Planktotrophic larval development is indicated by a small embryonic shell (size is also related to systematic placement) with little yolk followed by a multiwhorled shell formed by a free‐swimming veliger larva. Basal gastropod clades (e.g. Vetigastropoda) lack planktotrophic larval development. The great majority of Late Palaeozoic and Mesozoic ‘derived’ marine gastropods (Neritimorpha, Caenogastropoda and Heterobranchia) with known protoconch had planktotrophic larval development. Dimensions of internal moulds of protoconchs suggest that planktotrophic larval development was largely absent in the Cambrian and evolved at the Cambrian–Ordovician transition, mainly due to increasing benthic predation. The evolution of planktotrophic larval development offered advantages and opportunities such as more effective dispersal, enhanced gene flow between populations and prevention of inbreeding. Early gastropod larval shells were openly coiled and weakly sculptured. During the Mid‐ and Late Palaeozoic, modern tightly coiled larval shells (commonly with strong sculpture) evolved due to increasing predation pressure in the plankton. The presence of numerous Late Palaeozoic and Triassic gastropod species with planktotrophic larval development suggests sufficient primary production although direct evidence for phytoplankton is scarce in this period. Contrary to previous suggestions, it seems unlikely that the end‐Permian mass extinction selected against species with planktotrophic larval development. The molluscan classes with highest species diversity (Gastropoda and Bivalvia) are those which may have planktotrophic larval development. Extremely high diversity in such groups as Caenogastropoda or eulamellibranch bivalves is the result of high phylogenetic activity and is associated with the presence of planktotrophic veliger larvae in many members of these groups, although causality has not been shown yet. A new gastropod species and genus, Anachronistella peterwagneri, is described from the Late Triassic Cassian Formation; it is the first known Triassic gastropod with an openly coiled larval shell.     

Allozyme relationships in hypostomines (Teleostei: Loricariidae) from the Itaipu Reservoir,Upper Rio Paraná basin,Brazil

In an allozyme electrophoresis survey of 15 hypostomine species from the Itaipu Hydroelectric Reservoir, 25 loci from 14 enzyme systems were scored. Allozyme data allowed recording diagnostic genetic markers for all species analyzed and for some species groups within Hypostomus, a taxon which is taxonomically still unresolved in the Upper Rio Paraná basin. The mean expected heterozygosity of the species was considerably variable and hypotheses to tentatively explain this variation are discussed. A cladogram based upon the allelic frequencies of the species analyzed was produced by the continuous maximum likelihood method: Rhinelepis aspera and M. parananus were separated from the species of Hypostominae by a long branch length. Pterygoplichthys anisitsi was the sister of all the representatives of the genus Hypostomus. Within Hypostomus, two main clades were produced: in the first, H. cochliodon was the sister of the species comprising the H. plecostomus group, and in the second, the tree showed the following relationships: (H. albopunctatus (H. regani + Hypostomus sp. 3) + (H. margaritifer (H. microstomus (Hypostomus sp. 1 (H. ternetzi + Hypostomus sp. 2))))). Hypostomus ternetzi and Hypostomus sp. 2 are referred to here as representatives of the H. ternetzi group.     

Investigation of structure and antigenic capacities of Thermococcales cell envelopes and reclassification of "Caldococcus litoralis" Z-1301 as Thermococcus litoralis Z-1301

Fourteen strains of hyperthermophilic organotrophic anaerobic marine Archaea were isolated from shallow water and deep-sea hot vents, and four of them were characterized. These isolates, eight previously published strains, and six type strains of species of the order Thermococcales were selected for the study of cell wall components by means of thin sectioning or freeze-etching electron microscopy. The cell envelopes of most isolates were shown to consist of regularly arrayed surface protein layers, either single or double, with hexagonal lattice (p6) symmetry, as the exclusive constituents outside the cytoplasmic membrane. The S-layers studied differed in center-to-center spacing and molecular mass of the constituent protein subunits. Polyclonal antisera raised against the cells of 10 species were found to be species-specific and allowed 12 new isolates from shallow water hot vents to be identified as representatives of the species Thermococcus litoralis, Thermococcus stetteri, Thermococcus chitonophagus, and Thermococcus pacificus. Of the 7 deep-sea isolates, only 1 was identified as a T. litoralis strain. Thus, hyperthermophilic marine organotrophic isolates obtained from deep-sea hot vents showed greater diversity with regard to their S-layer proteins than shallow water isolates. Received: February 5, 1999 / Accepted: May 11, 1999     

Monoclonal antibodies to feline sarcoma virus gag and fes gene translational products

A series of hybridomas have been isolated which produce monoclonal antibodies directed against polyprotein gene products of the Gardner, Snyder-Theilen, and McDonough strains of FeSV. Within these are representatives of several immunoglobulin classes including IgG₁, IgG_2a, IgG_2b, IgG_2c, and IgM. Antibody produced by one hybridoma recognizes immunologic determinants localized within an FeLV gag gene structural component (p15) common to polyproteins encoded by all three FeSV isolates whereas antibody produced by a second is specific for p30 determinants unique to P170^gag-fms. Additional hybridomas secrete antibody directed against v-fes-encoded determinants common to the Gardner and Snyder-Theilen FeSV-encoded polyproteins. GA P110^gag-fes and ST P85^gag-fes immunoprecipitated by antibody directed against p15 exhibit tyrosine-specific protein kinase activity but lack such activity when precipitated by antibody specific for their acquired sequence (v-fes) components.