Phylogeny of the Neotropical moth tribe Josiini (Notodontidae: Dioptinae): a hidden case of Miillerian mimicry

The Neotropical moth tribe Josiini (Notodontidae: Dioptinae) contains over 100 described species in 11 genera. All are diurnal, with brightly-coloured, presumably aposematic wing patterns. Larval hostplants are exclusively in the genus Passiflora (Passifloraceae) except for two new records, reported here, from Tumera (Turneraceae). A comparative morphological study of 26 representative josiine species yielded 86 characters from adults, larvae and pupae, all of which are figured and discussed. Phylogenetic analysis of these data produced a single most-parsimonious cladogram. According to the phylogenetic results: (1) monophyly of the Josiini is strongly supported; (2) the currently accepted generic classification is in disarray; (3) morphological character variation is extensive, and adult traits reflect phylogeny more effectively than do those of immature stages; (4) wing pattern types have undergone convergent evolution. A rare phenotype, longitudinal wing stripes, appears in two widely divergent clades, suggesting the evolution of Miillerian mimicry within the Josiini.     

Molecular phylogenetic analysis of Violaceae (Malpighiales) based on plastid and nuclear DNA sequences

A phylogenetic analysis of Violaceae is presented using sequences from rbcL, atpB, matK and 18S rDNA from 39 species and 19 genera. The combined analysis of four molecular markers resulted in only one most parsimonious tree, and 33 of all 38 nodes within Violaceae are supported by a bootstrap proportion of more than 50%. Fusispermum is in a basal-most position and Rinorea, Decorsella, Rinoreocarpus and the other Violaceae are successively diverged. The monogeneric subfamily Fusispermoideae is supported, and it shares a number of plesiomorphies with Passifloraceae (a convolute petal aestivation, actinomorphic flowers and connate filaments). The other monogeneric subfamily Leonioideae is sunken within the subfamily Violoideae and is sister to Gloeospermum, sharing some seed morphological characteristics. The present molecular phylogenetic analysis suggests that the convolute, apotact and quincuncial petal aestivation is successively derived within the family. The evolutionary trends of the other morphological characteristics, such as a filament connation, the number of carpels and floral symmetry, are discussed. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A phylogeny of the trimeresurus group of pit vipers: new evidence from a mitochondrial gene tree

The Trimeresurus group is an important radiation of over 40 Asian pit viper species. Once considered congeneric, four genera are generally currently recognized (Trimeresurus sensu stricto, Ovophis, Protobothrops, and Tropidolaemus) but relationships within and between these are still unclear. This study, based on mitochondrial cytochrome b sequences, is the first to include a large number of species (21) and demonstrates that the current taxonomy does not adequately represent either the relationships or the genetic diversity present in the complex. Although many deeper nodes are not strongly supported, the following novel conclusions are all well supported: (1) the paraphyly of Trimeresurus sensu stricto, (2) the presence of several divergent clades within Trimeresurus sensu stricto, (3) the paraphyly of some widespread, medically significant, species, (4) the nonmonophyly of Ovophis, and (5) the monophyly of Protobothrops. Mapping of morphological characters onto the mitochondrial tree further supports the four groups proposed for Trimeresurus sensu stricto.     

Phylogeny of the Celastraceae inferred from phytochrome B gene sequence and morphology

Phylogenetic relationships within Celastraceae were inferred using a simultaneous analysis of 61 morphological characters and 1123 base pairs of phytochrome B exon 1 from the nuclear genome. No gaps were inferred, and the gene tree topology suggests that the primers were specific to a single locus that did not duplicate among the lineages sampled. This region of phytochrome B was most useful for examining relationships among closely related genera. Fifty-one species from 38 genera of Celastraceae were sampled. The Celastraceae sensu lato (including Hippocrateaceae) were resolved as a monophyletic group. Loesener's subfamilies and tribes of Celastraceae were not supported. The Hippocrateaceae were resolved as a monophyletic group nested within a paraphyletic Celastraceae sensu stricto. Goupia was resolved as more closely related to Euphorbiaceae, Corynocarpaceae, and Linaceae than to Celastraceae. Plagiopteron (Flacourtiaceae) was resolved as the sister group of Hippocrateoideae. Brexia (Brexiaceae) was resolved as closely related to Elaeodendron and Pleurostylia. Canotia was resolved as the sister group of Acanthothamnus within Celastraceae. Perrottetia and Mortonia were resolved as the sister group of the rest of the Celastraceae. Siphonodon was resolved as a derived member of Celastraceae. Maytenus was resolved as three disparate groups, suggesting that this large genus needs to be recircumscribed.     

Morphological analysis, phylogenies and classification in Velloziaceae

A morphological (non-molecular) cladistic analysis of the Velloziaceae is presented. The terminal taxa are 47 species of Velloziaceae plus four taxa as outgroups: Acanthochlamys bracteata (Acanthochlamydaceae), Encholirium scrutor (Bromeliaceae), Thoracocarpus bissectus (Cyclanthaceae) and Pandanus racemosus (Pandanaceae). The species of Velloziaceae sampled represent a significant proportion of the morphological diversity of the family, including all recognized genera and sections. The analysis revealed two major groups within Velloziaceae, supported mainly by stomata, vascular bundles in the pedicel, aquiferous tissues, filaments, anthers, pollen, stigma, seeds, ploidy and chemical characters. Comparison between this and the previous phylogenetic hypotheses for Velloziaceae, together with the two conflicting current classifications, suggests that there is incompatibility concerning the support of current genera and sections. The only three groups supported in all phylogenies are Barbacenioideae sensu Menezes (= Barbacenia sensu Smith & Ayensu), Xerophyta sect. Barbacenioides and Xerophyta sect. Xerophyta sensu Smith & Ayensu.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 157–173.     

Cladistic analysis of the Lythraceae sensu lato based on morphological characters

GRAHAM, S. A., CRISCI, J. V. & HOCH, P. C, 1993. Cladistic analysis of the Lythraceae sensu lato based on morphological characters. The Lythraceae s. I. comprise 31 mostly highly distinctive genera distributed worldwide. Cladistic analyses of the family were undertaken using 26 characters from anatomy, floral morphology, pollen, and seed morphology. Of four outgroup hypotheses, the Onagraceae offered the best heuristic assessment, generating 3746 trees with a tree length of 83 and consistency index and (C.I.) of 0.41. A strict consensus tree from the 3746 trees produced a basal monophyletic group of five genera (Sonneratia, Duabanga, Punka, Lagerstroemia, Lawsonia) characterized by anthotelic (determinate) inflorescences and wet stigmas, and a second clade with blastotelic (indeterminate) inflorescences, dry stigmas, and reduced carpel number. Successive weighting with Onagraceae as outgroup generated five most parsimonious trees with a tree length of 164 and C.I. of 0.75. Internal branches are weakly supported by only seven non-homoplasious characters. Significant results of the analysis include: (1) recognition of the two major clades and a total of seven monophyletic groups within the family; (2) the paraphyly of subfamily Lythroideae (Lythraceae s. s .); and (3) indication that genera endemic to the New World have been derived from more than one ancient Old World evolutionary line. The current taxonomic classification of the family is not closely correlated with results of the cladistic analysis.     

Molecular systematics of basal subfamilies of ants using 28S rRNA (Hymenoptera: Formicidae)

For many years, the ant subfamily Ponerinae was hypothesized to contain the basal (early branching) lineages of ants. Recently the Ponerinae were reclassified into six poneromorph subfamilies based on morphological analysis. We evaluate this new poneromorph classification using 1240 base pairs of DNA sequence data obtained from 28S rRNA gene sequences of 68 terminal taxa. The molecular tree supported the monophyly of the ant family Formicidae, with 100% parsimony bootstrap (PB) support and posterior probabilities (PP) of 1.00, with the ant subfamily Leptanillinae as a sister group to all other ants (PB=62, PP=93). However, our analyses strongly support the polyphyly of the Poneromorph subfamilies (sensu Bolton). The Ectatomminae and Heteroponerinae are more closely related to the Formicoid subfamilies than to the rest of the poneromophs (PB=96, PP=100). The Amblyoponinae (PB=52, PP=96), Paraponerinae (PB=100, PP=100), Ponerinae (PB<50, PP=71), and Proceratiinae (PB=98, PP=100) appear as distinct lineages at the base of the tree and are identified as a poneroid grade. Monophyletic origins for the poneroid subfamilies Amblyoponinae, Paraponerinae, Ponerinae and Proceratiinae are supported in our analysis. However, the genus Platythyrea forms a distinct sister group to the Ponerini within the Ponerinae. The Heteroponerinae, based on our sample of Heteroponera, are associated with the subfamily Ectatomminae (PB=98, PP=100). Furthermore, our data indicate the genus Probolomyrmex belongs to the Proceratiinae as suggested by recent morphological analysis (PB=98, PP=100).     

Phylogeny and classification of Marantaceae

Relationships of Marantaceae were estimated from nucleotide sequence variation in the rps16 intron (plastid DNA) and from morphological characters. Fifty-nine species (21 genera) formed the ingroup, and 12 species (12 genera) of other Zingiberales formed the outgroup. There is no support for the traditional subdivision of Marantaceae into a triovulate and a uniovulate tribe or the informal groups previously proposed. The so-called Donax group forms a paraphyletic grade that is basal within Marantaceae. Thalia appears as the distal branch of this grade, but its position is not supported in jackknife analysis. The so-called Calathea group is monophyletic in all shortest trees but not supported with greater than 50% jackknife. The genus Calathea appears to be paraphyletic. The Maranta and Phrynium groups are clearly polyphyletic. Maranta, Koernickanthe , and genera of the Mymsma group, all neotropical, form a strongly supported monophyletic group. The sister of this group is the palaeotropical genus Halopegia. Koernickanthe is nested within Maranta , as this genus is traditionally circumscribed. The African genera Ataenidia and Marantochloa form a strongly supported clade in which Ataenidia is the sister group to Marantochloa . Based on phylogeny it is concluded that Africa, in spite of being much poorer in species, is the most likely ancestral area of Marantaceae     

Phylogenetic relationships among Acanthaceae: evidence from noncoding trnL-trnF chloroplast DNA sequences

We used sequence data from the intron and spacer of the trnL-trnF chloroplast region to study phylogenetic relationships among Acanthaceae. This region is more variable than other chloroplast loci that have been sequenced for members of Acanthaceae (rbcL and ndhF), is more prone to length mutations, and is less homoplasious than these genes. Our results indicate that this region is likely to be useful in addressing phylogenetic questions among but not within genera in these and related plants. In terms of phylogenetic relationships, Elytraria (representing Nelsonioideae) is more distantly related to Acanthaceae sensu stricto (s.s.) than Thunbergia and Mendoncia. These last two genera are strongly supported as sister taxa. Molecular evidence does not support monophyly of Acanthaceae s.s., although there is strong morphological evidence for this relationship. There is strong support for monophyly of four major lineages within Acanthaceae s.s.: the Acanthus, Barleria, Ruellia, and Justicia lineages as here defined. The last three of these comprise a strongly supported monophyletic group, and there is weaker evidence linking the Ruellia and Justicia lineages as closest relatives. Within the Acanthus lineage, our results confirm the existence of monophyletic lineages representing Aphelandreae and Acantheae. Lastly, within the Justicia lineage, we develop initial hypotheses regarding the definition of sublineages; some of these correspond to earlier ideas, whereas others do not. All of these hypotheses need to be tested against more data.     

槭树科植物广义形态学性状分支分析

通过45个广义的形态学性状对槭树科(Aceraceae)尤其是槭属(Acer L.)的主要类群做了分支分析,结果显示：1)槭属内由于各类群分布着较多的同塑性状状态,而难以为属下组间关系的解决提供更多有价值的信息;通过对具体的性状状态分布分析显示,对于象槭属这样在形态上分化较大的类群,由于多数分类性状在不同类群间经历了平行和逆转演化,因而在较低分类阶元水平很难选择合适的性状来通过分支分析构建其系统发育;2)鸡爪槭组(section Palmata)作为整个槭属的基部类群,虽然支持率较低,但与其它类群相比在槭属内维持了较多的原始性状;3)金钱槭属(Dipteronia Oliv.)的两个种作为单系得到了100％的靴带支持,且和槭属作为姐妹群也得到了较好的支持。     

New taxonomic concepts for the important forest pathogen Cryphonectria parasitica and related fungi

Species of Cryphonectria include some of the world's most important and devastating tree pathogens. Largely through the application of DNA sequence phylogenies, the taxonomy of these fungi has undergone major changes in recent years. Cryphonectria, including the chestnut blight pathogen Cryphonectria parasitica, has been restricted to species that have semi-immersed stromata, orange and pulvinate conidiomata, and one-septate ascospores. Other species of Cryphonectria with different morphological characteristics have been transferred to new genera that are strongly supported by phylogenetic data. This review represents a summary of the taxonomic changes to species of Cryphonectria sensu lato, and we discuss the impact that these changes might have on the understanding of their ecology, pathology and worldwide distribution.     

Phylogeny of the superfamily Gelechioidea (Lepidoptera: Obtectomera), with an exploratory application on geometric morphometrics

The superfamily Gelechioidea (Lepidoptera: Obtectomera) has a high species diversity. It consists of more than 18,400 described species and has a global distribution. Among it, large numbers of species were reported to be economically important to people's production and life. However, relationships among families or subfamilies in Gelechioidea have been exceptionally difficult to resolve using morphology or single gene genealogies. Multiple gene genealogies had been used in the molecular phylogenetic studies on Gelechioidea during the past years, but their phylogenetic relationships remain to be controversial mainly due to their limited taxa sampling relative to such high species diversity. In this paper, 89 ingroup species representing 55 genera are sequenced and added to the data downloaded from GenBank, and six species representing four closely related superfamilies are chosen as outgroup. The molecular phylogeny of Gelechioidea is reconstructed based on the concatenated data set composed of one mitochondrial marker (COI) and seven nuclear markers (CAD, EF-1ɑ, GAPDH, IDH, MDH, RpS5, wingless). The phylogenetic results, taking into consideration of the comparative morphological study, show that the clade of Gelechioidea is strongly supported and separated from other superfamilies, which further proves its monophyly. Five families are newly defined: Autostichidae sensu nov., Depressariidae sensu nov., Peleopodidae sensu nov., Ashinagidae sensu nov. and Epimarptidae sensu nov. Meanwhile, a monophyletic “SSABM” clade considered to be closely related is proposed for the first time, consisting of Stathmopodidae, Scythrididae, Ashinagidae, Blastobasidae and Momphidae. Moreover, geometric morphometric analyses using merged landmark data set from fore and hind wings of 118 representative species are conducted. The phenetic tree shows that the monophyly and phylogenetic relationships correspond with the results of molecular phylogeny largely, which well proves its importance and potential application in both phylogenetic reconstruction and species identification.     

Phylogeny and morphological evolution of tribe Menispermeae (Menispermaceae) inferred from chloroplast and nuclear sequences

The Menispermaceae family contains ca. 72 genera with 450 species that are almost entirely tropical. Its phylogeny at the tribal level has never been examined using molecular data. Here we used DNA sequences of the chloroplast matK gene and trnL-F regions, and the nuclear ITS region to study the delimitation and position of the tribe Menispermeae within the family and its subtribal monophyletic groups. Family-wide phylogenetic analyses of the chloroplast data produced two strongly supported clades. The first clade contains two subclades: Coscinieae including Arcangelisia and Anamirta, and Tinosporeae sensu lato including Fibraureae, supported by morphological characters, such as traits of the cotyledon, stylar scar and embryo. The second clade consists of the tribes Menispermeae sensu DC. and Tiliacoreae Miers. All our analyses surprisingly recognized that tribe Menispermeae is not monophyletic unless tribe Tiliacoreae is included, suggesting that characters of cotyledon and stylar scar are very important for the infrafamilial classification, and that endosperm presence vs. absence was over-emphasized in traditionally tribal division of the family. Our topologies indicate a secondary loss of endosperm. The monophyly of two subtribes of the tribe Menispermeae, Stephaniinae and Cissampelinae, is supported by the cpDNA and ITS data, as well as by morphological characters, including aperture types and shapes, and colpal membrane features of pollen grains, and sepal number of male flowers. The Cocculinae was recognized as a paraphyletic group containing the remaining genera of the tribe Menispermeae.     

Phylogenetic interrelationships of the eel families Derichthyidae and Colocongridae (Elopomorpha: Anguilliformes) based on the pectoral skeleton

A cladistic analysis of the eel families Derichthyidae and Colocongridae is herein proposed for the first time on the basis of morphological data. We discovered dozens of new phylogenetic characters derived from a detailed analysis of the pectoral skeleton, an anatomical system neglected by most previous studies. Our maximum parsimony analysis indicates that Colocongridae sensu lato is paraphyletic, with its two constituent genera Coloconger and Congriscus appearing as successive sister groups of derichthyids. Monophyly of the family Derichthyidae, which has been questioned by some studies, is herein strongly supported by 10 unambiguous synapomorphies. We also stress the importance of the appendicular skeleton as a useful source of phylogenetic information for the resolution of systematic problems within Anguilliformes.     

Molecular Phylogeny of Rhizophoraceae Based on rbcL Gene Sequences

rbcL sequences to clarify the inter- and intrarelationships of Rhizophoraceae which have been variously discussed. The analyses included 12 of the 15 genera of Rhizophoraceae (4/7 of Macarisieae, 4/4 of Gynotrocheae, and 4/4 of Rhizophoreae) and a few putatively related taxa, including two of the four genera of Anisophylleaceae. The most parsimonious trees supported the monophyly of Rhizophoraceae as well as each of the three traditionally recognized tribes Macarisieae, Gynotrocheae, and Rhizophoreae. The family Rhizophoraceae is a sister taxon to Erythroxylum (Erythroxylaceae) and is further closely related to Byrsonima (Malpighiaceae), Passiflora (Passifloraceae), Turnera (Turneraceae), Ochna (Ochnaceae), Drypetes (Euphorbiaceae), and Humiria (Humiriaceae). Anisophylleaceae, which have often been included in Rhizophoraceae as a tribe or subfamily, are placed in a common clade with Begonia (Begoniaceae), Cucurbita (Cucurbitaceae), Coriaria (Coriariaceae), Corynocarpus (Corynocarpaceae), Datisca (Datiscaceae), Tetrameles (Datiscaceae), and Octomeles (Datiscaceae). Within Rhizophoraceae the mangrove tribe Rhizophoreae is sister to the inland tribe Gynotrocheae, with inland tribe Macarisieae positioned as a sister taxon to these two tribes. This pattern of relationships within the family basically agrees with those suggested by cladistic analyses based on morphological characters, except that Gynotrocheae are monophyletic with Crossostylis as a derived taxon within the tribe in the present study. Based on this cladogram for Rhizophoraceae, we discuss evolutionary trends of a few ecological and morphological characters, including the formation of aerial roots and the ovary position. Received 12 August 1999/ Accepted in revised form 11 October 1999     

Phylogeny of Podocarpaceae: comparison of evidence from morphology and 18S rDNA

Maximum parsimony analyses of the genera of Podocarpaceae were conducted using sequence data from 18S ribosomal DNA. Trees from sequence, morphological, and combined data differ in taxon arrangement, but are similar in that Podocarpus sensu lato and Dacrydium s.l. are unnatural, while Podocarpaceae (including Phyllocladus) are monophyletic. The clade Microcachrys + Microstrobos is recognized in all analyses, but its placement differs, i.e., nested among other scale-leaved taxa in the morphological analysis, but associated with Nageia and other tropical genera in the sequence analyses. Trees from combined data reflect this ambiguity. Podocarpus sensu stricto is paraphyletic according to most trees. Inferences of plesiomorphic character states within the family are largely consistent between analyses and support the view that prototypical podocarps had bifacial leaves, cones with several fertile cone scales, and large epimatia (cone scales) that covered the inverted ovules.     

Phylogeny and early evolution of the Cynipoidea (Hymenoptera)

Based on several structural and biological characteristics, the Cynipoidea can be divided into two groups, 'macrocynipoids' and 'microcynipoids'. The macrocynipoids (i.e. the family Liopteridae and the genera Austrocynips, Eileenella, Heteribalia and Ibalia ) are generally large insects that parasitize wood- or cone-boring insect larvae. The microcynipoids are smaller insects that are either phytophagous gall inducers and inquilines (Cynipidae) or parasitoids of larvae of Hymenoptera, Neuroptera or Diptera (Figitidae sensu lato , including the families Eucoilidae, Charipidae and Anacharitidae). The phylogenetic relationships among genera of macrocynipoids and between these and a sample of four genera representing the Figitidae and Cynipidae were examined by parsimony analysis of 110 external morphological characters of adults. Within the macrocynipoids, three monophyletic lineages emerged, classified here as different families: the Austrocynipidae, with a single species, Austrocynips mirabilis , the only cynipoid with a true pterostigma; the Ibaliidae, including the genera Eileenella, Ibalia and Heteribalia ; and the Liopteridae, comprising the remaining genera of macrocynipoids. The analysis further supported the monophyly of the microcynipoids and indicated that the macrocynipoids form a paraphyletic group relative to the microcynipoids, with the shortest tree suggesting the relationship (Austrocynipidae, (Ibaliidae, (Liopteridae, microcynipoids))). These results imply that cynipoids were originally parasitoids of wood-boring insect larvae and that the other modes of life evolved secondarily within the group.