Characterization of Bacillus anthracis-like bacteria isolated from wild great apes from Cote d'Ivoire and Cameroon

We present the microbiological and molecular characterization of bacteria isolated from four chimpanzees and one gorilla thought to have died of an anthrax-like disease in C?te d'Ivoire and Cameroon. These isolates differed significantly from classic Bacillus anthracis by the following criteria: motility, resistance to the gamma phage, and, for isolates from Cameroon, resistance to penicillin G. A capsule was expressed not only after induction by CO(2) and bicarbonate but also under normal growth conditions. Subcultivation resulted in beta-hemolytic activity and gamma phage susceptibility in some subclones, suggesting differences in gene regulation compared to classic B. anthracis. The isolates from C?te d'Ivoire and Cameroon showed slight differences in their biochemical characteristics and MICs of different antibiotics but were identical in all molecular features and sequences analyzed. PCR and Southern blot analyses confirmed the presence of both the toxin and the capsule plasmid, with sizes corresponding to the B. anthracis virulence plasmids pXO1 and pXO2. Protective antigen was expressed and secreted into the culture supernatant. The isolates possessed variants of the Ba813 marker and the SG-749 fragment differing from that of classic B. anthracis strains. Multilocus sequence typing revealed a close relationship of our atypical isolates with both classic B. anthracis strains and two uncommonly virulent Bacillus cereus and Bacillus thuringiensis isolates. We propose that the newly discovered atypical B. anthracis strains share a common ancestor with classic B. anthracis or that they emerged recently by transfer of the B. anthracis plasmids to a strain of the B. cereus group.     

Characterization of Peanut Stripe Virus Isolates from Soybean in Taiwan

Potyvirus isolates were obtained in Taiwan from soybean showing crinkle, mottle, mosaic or blistering. They were identified as peanut stripe virus (PStV) on the basis of host range, serology, molecular weight of the capsid proteins and morphology of cytoplasmic cylindrical inclusions. PStV was found to be closely related serologically to adzuki bean mosaic virus (AzMV), blackeye cowpea mosaic virus (BICMV), and the bean common mosaic virus (BCMV) strain NY 15. A clear differentiation of PStV from these related viruses was possible on the basis of the cylindrical inclusion morphology. Only the peanut isolate of PStV from the USA and the three soybean isolates of PStV from Taiwan produced pinwheels, scrolls and curved laminated aggregates whereas the other serologically related viruses produced scrolls only. Whilst the peanut isolate of PStV infected all nine peanut cvs tested, the soybean isolate PN of PStV infected two peanut cvs only. AzMV, BICMV and two strains of soybean mosaic virus did not infect any of the peanut cultivars tested. On the other hand, nineteen and three of the 27 soybean cvs were susceptible to the soybean isolate PN and the peanut isolate of PStV, respectively. The capsid proteins of the peanut and the three soybean isolates of PStV and of AzMV appeared to be proteolytically undegraded and to have nearly identical molecular weights of 35 kD. Based upon results of virus surveys in soybean plantings in Taiwan, the incidence of soybean isolates of PStV in soybean is similar to that of soybean mosaic virus, suggesting that these PStV strains might be economically significant to soybean production m Taiwan.     

Evaluation of Tip Culture, Thermotherapy and Chemotherapy for Elimination of Peanut Mottle Virus from Arachis hypogaea

Peanut (Arachis hypogaea L.) plants (cvs Florunner and Pronto) were inoculated at the two-leaf stage with peanut mottle virus (PMV) to obtain PMV-infected plants. Shoot-tips from plants grown in the glasshouse (27°C) or from plants maintained at 35°C were used for tip culture. In some experiments ribavirin was added to the culture medium at 5 mg/1, 10 mg/1, 15 mg/1 or 20 mg/1. Plants regenerated from meristems or shoot-tips taken from virus-infected plants were not virus-free. After 45 days at 35°C, foliar tissue of 93 % of Florunner and 95 % of Pronto plants tested negative for PMV by enzyme-linked immunosorbent assay (ELISA). When shoot-tips from the plant that tested negative by ELISA were used for tip culture, no virus-free plants were obtained. No virus-free plants were obtained from tips cultured on medium supplemnted with ribavirin. However, when tip culture, thermotherapy and chemotherapy were combined; 80 % of Florunner and 100 % of Pronto plants were found negative for PMV.     

Donnees sur les milieux limniques stagnants des savanes de Lamto (Cote d'Ivoire)

Through the rainy season the savannah at Lamto (Ivory Coast) is dotted with numerous temporary ponds. The size of these ponds and their variation through the season is explained by the theoretical water surplus, calculated as a function of temperature and rainfall. Physico-chemical measurements taken from five pond types show three common features: low conductivity, slight acidity and high iron concentration. Four depth-correlated vegetation zones are apparent and the overall structural complexity of the ponds is dependent on the water depth and the species composition of these vegetation zones. The effects of pond structural complexity on the diversity and stability of the system is discussed.

     

Sedimentation modified by wind induced resuspension in a shallow tropical lagoon (Cote d'Ivoire)

In shallow environments, under certain conditions of fetch, wind velocity, bathymetry and bottom characteristics, resuspension can be generated by wind induced waves. In the tropical Ebrié lagoon, austral trade winds are dominant almost all year long, and their velocity shows a marked diel pattern with maximum speed between noon and midnight. Only austral trade winds with a speed >3 m s⁻¹ allow particle resuspension which is effective for depths<1.5 m. In these areas, significantly higher values of chlorophyll biomass and mineral seston are noted during the windy sequences. Granulometric and mineralogical analyses showed that only the surficial sediment (0–3 cm) was involved in resuspension. This process induces several effects: 1) an increase of the suspended matter concentration in the water and thus a light attenuation due to a higher turbidity, 2) a redistribution in the whole water column of nutrients from the pore water and 3) a removal of the finer fractions from the superficial sediment. On the contrary, for depths>1.5 m, particle sinking is permanent in depressions which are spontaneously transformed into anoxic systems. At the lagoon scale, sedimentation is significantly modified by wind induced resuspension. According to the bathymetry and the distance from a river, three sedimentary facies are recognized. Their grain size distributions are parabolic in areas where resuspension occurs, logarithmic in areas where no resuspension is possible and hyperbolic in the hollows and the main channels. Finally, a large part of the allochthonous inputs (from drainage and rivers) and autochthonous pelagic production is trapped into the Ebrié lagoon and less than 10% of the particles entering the lagoon are exported toward the Atlantic Ocean.     

Stress Proteins and Isozymology of Acid Phosphatase, Esterase, and Peroxidase in Phaseolus vulgaris Following Peanut Mottle Virus Infection

The present work was undertaken to study soluble protein changes and enzyme alterations in Topcrop bean ( Phaseolus vulgaris L.) primary leaves following inoculation with peanut mottle virus (PMV) in an attempt to elucidate the biochemical basis of the hypersensitive reaction in this host virus combination. Using the discontinuous polyacrylamide gel electrophoresis (disc-PAGE) technique, at least four apparently novel protein bands at Rf values of 0.80, 0.77, 0.74 and 0.68 were observed in infected tissue. The band at Rf 0.76 seems to be injury related and is shown here to be an isozyme of acid phosphatase. It is believed that these proteins are neither the cause nor the product of necrosis and may thus play a role in the active defense mechanism of the plant. In this virus host combination it was found that heating soluble protein fractions at 55 °C for 10 min before electrophoresis dramatically reduced the background and improved resolution on gels. While the biological function(s) of these proteins needs further investigations it is almost certain that none of them is an isozyme of alkaline phosphatase, acid phosphatase, esterase, or peroxidase. Zymogram analysis has additionally revealed the absence of alkaline phosphatase activity in untreated, abraded and PMV-infected primary leaves and no qualitative or quantitative changes in esterase isozymes have been observed in primary leaf tissues following abrasion or PMV–infection. By contrast, qualitative alterations in acid phosphatase after PMV-infection and both qualitative and quantitative changes in peroxidase after mechanical abrasion and PMV-infection have also been demonstrated.     

Transmission Studies with Cucumber Green Mottle Mosaic Virus

Cucumber green mottle mosaic virus may spread in bottlegourd under field conditions through soil contaminated with infected plant debris followed by contact. No seed transmission was noticed in bottlegourd (Lagenaria siceraria) or vegetable marrow (Cucurbita pepo) although pollen grains and cotyledons from infected bottlegourd flowers or seeds, respectively, contained negliginle amounts of virus. Cucumber leaf beerles (Raphidopalpa fevicollis) are probable vectors since their regurgitated fluid and excretes contained infective virus particles. No vector fungi were found in the soil around infected bottlegourd plants.     

Characterization of Two Strains of Cowpea Mild Mottle Virus Naturally Infecting Groundnut (Arachis hypogaea L.) in India

Two viruses were isolated from commercial groundnut plants showing mild mottle (MM) and severe mottle (SM) symptoms in the Rayalaseema area of Andhra Pradesh State, India. The host range of both the isolates was restricted to Fabaceae. The physical properties of both isolates were: DEP 10^-6 to 10^-7. TIP 70–85 C and LIV 5–8 days. Partially purified virus preparations contained slightly flexuous filamentous particles. In ELISA and gel diffusion tests both isolates reacted similarly with anusera to the carlaviruses cowpea mild mottle, cassia mild mosaic and potato M. Particle morphology. sedimentation coefficient, and estimated sizes of the coat proteins and RNAs gave additional evidence that the viruses were carlaviruses. Bemisia labaci transmitted only the MM isolate and the two isolates also differed in electrophoretic mobility of intact particles and amino acid composition of the coat proteins. The isolates are identified as distinct strains of cowpea mild mottle virus.     

Isolation and Partial Characterization of Peanut Top Paralysis Virus (PTPV), a Destructive Virus Causing a New Disease in Peanut (Arachis hypogaea L.)

A destructive virus, causing top paralysis to peanut, was discovered in the wild germplasm collection growing in the USDA-ARS greenhouses, Stillwater, Oklahoma, USA. The symptoms observed on the wild plant were restricted to a few leaves as green batches in a light green to yellow background with some leaflets having lost most of the basal part of the laminae leaving the top portion rolling upwards forming a cone. The virus was mechanically transmitted to cultivated peanut ( Arachis hypogaea L,.) where it caused more severe and destructive symptoms including stunting, severe malformation of leaves and partial or complete disappearance of leaflet laminae. This virus differed in symptomology, host range, and/or serological reactivity from allpeanut viruses reported in the literature, particularly those causing leaf malformation and stunting. The virus induced necrotic local lesions on Phaseolus vulgaris L. cv. "Topcrop" and chlorotic local lesions with necrotic centres bordered withvery bright intense red color on Chenopodium amaranticolor. In both passive indirect enzyme-linked immunosorbent assay (PAS-ELISA) and Ouchterlony double immunodiffusion test, the virus did not react with antisera against brome mosaic, bean yellow mosaic, peanut stripe, potato Y, tobacco mosaic, watermelon mosaic 1, watermelon mosaic 2, wheat soilborne mosaic, wheat streak mosaic, and zucchini yellow mosaic viruses.
However, in reciprocal cross reactions the virus seemed to share a common antigenic determinant with a peanut mottle virus isolate from Oklahoma (PMV-OK). The virus had flexuous filamentous particles with a length of 750–850 nm, falling within the range reported for the potyvirus group. The virus was successfully purified and the molecular weight of its protein subunit was found to be 30000 d. A polyclonal antiserum was raised in rabbits against the virus and used for reciprocal serological tests.     

Reaction of Muskmelon Collections to Cucumber Green Mottle Mosaic Virus

Abstract In a preliminary trial 187 collections of muskmelon comprising dessert and non-dessert types and wild Cucumis species were screened against cucumber green mottle mosaic virus (CGMMV) under field conditions. Based on the reaction to CGMMV, 64 were studied further in detail. Thirteen collections were found to be resistant in two field screenings (summer and rainy seasons). Results on screening under artificial conditions against pure isolate of CGMMV indicated that Cucumis figarei , C. myriocarpus 1, C. myriocarpus 3, C. africanus 1, C. africanus 2, C. meeusii, C. ficifolius and C. zeyheri 2 were resistant to virus. Immune nature of resistance was later confirmed by back inoculation technique and, transmission electron microscopic study of C. figarei, C. ficifolius, C. meeusii, C. africanus 1 and C. zeyheri 2. Phoot ( C. melo var. momordica ) and Kachri (non-dessert types), FM 1 and FM 2 (Cornell breeding lines) and C,. myriocarpus 2 were also resistant to CGMMV with very mild symptoms.     

Pepper Mild Mottle Virus as an Indicator of Fecal Pollution

Accurate indicators of fecal pollution are needed in order to minimize public health risks associated with wastewater contamination in recreational waters. However, the bacterial indicators currently used for monitoring water quality do not correlate with the presence of pathogens. Here we demonstrate that the plant pathogen Pepper mild mottle virus (PMMoV) is widespread and abundant in wastewater from the United States, suggesting the utility of this virus as an indicator of human fecal pollution. Quantitative PCR was used to determine the abundance of PMMoV in raw sewage, treated wastewater, seawater exposed to wastewater, and fecal samples and/or intestinal homogenates from a wide variety of animals. PMMoV was present in all wastewater samples at concentrations greater than 1 million copies per milliliter of raw sewage. Despite the ubiquity of PMMoV in human feces, this virus was not detected in the majority of animal fecal samples tested, with the exception of chicken and seagull samples. PMMoV was detected in four out of six seawater samples collected near point sources of secondary treated wastewater off southeastern Florida, where it co-occurred with several other pathogens and indicators of fecal pollution. Since PMMoV was not found in nonpolluted seawater samples and could be detected in surface seawater for approximately 1 week after its initial introduction, the presence of PMMoV in the marine environment reflects a recent contamination event. Together, these data demonstrate that PMMoV is a promising new indicator of fecal pollution in coastal environments.Existing wastewater treatment practices are not always effective at removing the large number of pathogens (bacteria, protists, and viruses) present in human feces (17, 42, 47-49, 51). Therefore, wastewater discharges into the environment can have a negative impact on human health. Recreational waters throughout the United States are monitored for the presence of fecal pollution as a means of limiting public exposure to pathogens in areas impacted by wastewater discharges (44). The presence of pathogenic viruses in aquatic environments is an important parameter to consider in the evaluation of water quality. However, the bacterial indicators currently used to detect fecal contamination, such as fecal coliforms and enterococci, often do not correlate with the presence of feces-associated viruses and other pathogens (5, 10, 26, 33, 37, 51). In response, several researchers have proposed the use of viral indicators as a more effective method for monitoring wastewater contamination and the associated risks to public health (11, 14, 31).To date, the majority of the proposed viral indicators of fecal pollution are enteric viruses transmitted via the fecal-oral route (4). Enteric viruses present in raw sewage (including members of the families Adenoviridae, Caliciviridae, Picornaviridae, and Reoviridae and of the genus Anellovirus) have been used in several previous studies to identify fecal pollution in the environment (7, 8, 11, 12, 13, 18, 19, 27, 28, 32-36, 38, 50, 51). Of the enteric viruses that have been used as indicators, only the adenoviruses were ubiquitously found in raw sewage samples collected throughout the United States (41). Picobirnaviruses and Torque teno virus are abundant in raw sewage from some regions and thus have also been proposed as indicator viruses (15, 41). However, one potential problem with the use of human viruses as indicators is that their abundance in wastewater depends on the degree of infection and shedding in the human population at any given time.In addition to viruses infecting humans, other viruses shed in feces may be useful for indicating wastewater pollution. The plant pathogen Pepper mild mottle virus (PMMoV) was the most abundant virus found in a metagenomic survey of RNA viruses from human feces (52). PMMoV is a positive-sense, single-stranded RNA virus that belongs to the Tobamovirus genus and infects hot, bell, and ornamental peppers (Capsicum spp.) (9). The nonenveloped, rod-shaped PMMoV virions are extremely stable (9) and have been demonstrated to retain their infectivity for plants after passage through the human gut (52). PMMoV originates from processed pepper products (e.g., hot sauce and curry) and is excreted in human feces at concentrations of 1 million to 1 billion viruses per g (dry weight) (52). Since the presence of PMMoV in human feces is dietary in origin, this plant pathogen may be more abundant in the healthy human population than viruses that cause human disease.This study analyzed the presence of PMMoV in raw sewage and treated wastewater samples collected from wastewater treatment facilities throughout the coastal United States. To determine if PMMoV is a human-specific indicator useful for tracking the source of fecal pollution, fecal samples from numerous animals were tested for this virus. Finally, the presence of PMMoV in marine environments exposed to wastewater was determined and compared to that of other microbial indicators. The results of this work demonstrate that PMMoV is a promising indicator of fecal pollution.