2010–2015年华东地区猪圆环病毒2型的分子流行病学分析

【目的】猪圆环病毒2型(PCV2)是严重危害世界养猪业的重要传染病,即猪圆环病毒相关疾病(PCVAD)的重要病原,其致病机制及流行规律尚未阐明。本研究对2010–2015年间采集自中国华东地区的病料进行PCV2检测,以探讨中国华东地区PCV2的分子流行病学特征,分析PCV2的遗传演化规律。【方法】本研究利用PCR方法对384份断奶仔猪多系统衰竭综合征疑似发病猪样本进行检测,并对随机选取的42份阳性样品进行PCV2全基因组的测定和分析。【结果】华东地区普遍存在PCV2的感染,阳性率为41.15%。序列扩增获得42株PCV2全长基因组,同源性和系统进化树分析表明,基于PCV2 ORF2和全长核苷酸序列构建的系统进化树结构是基本一致的。从病料中测得的42株PCV2与11株参考毒株序列的ORF2基因的核苷酸和氨基酸序列同源性分别为87.0%–100.0%和82.5%–100.0%。遗传进化分析显示,53株PCV2毒株可分为4个基因型,即PCV2a、PCV2b、PCV2c和PCV2d。本文获得的42株序列ORF2基因的核苷酸和氨基酸序列同源性分别为89.6%–100.0%和86.8%–100%,...     

基于宏病毒组学技术挖掘猪腹泻粪便的病毒群落组成

为系统鉴定现阶段上海地区仔猪腹泻样品中的病毒群落组成,本研究利用宏病毒组学技术对临床采集的猪腹泻粪便进行了宏病毒高通量测序。结果显示,测序获得了1,676,726个RNAcontig和95,111个DNAcontig,RNA病毒和DNA病毒序列分别占比38.58%和3.10%。其中星状病毒科、杯状病毒科和小RNA病毒科是病毒总群落中占比最高的前3个科。虽然DNA病毒在病毒总群落中的占比较低,但其单组分环状DNA (CRESS-DNA)病毒种类丰富多样,包含有18种CRESS-DNA病毒。经基因组序列深度拼接,共获得了46条病毒全基因组序列,包括2株猪星状病毒和3株类似星状病毒、2株札幌病毒、16株小双节RNA病毒和23株CRESS-DNA病毒。其中1株札幌病毒归属于GII/3亚型,与人札幌病毒亲缘性较近。16株小双节RNA病毒中有4株归属于GGI亚型,其余12株归属于GGII亚型。23株CRESS-DNA病毒中有1株归属于类双生病毒科、12株CRESS-DNA病毒归属于小环状DNA病毒科,另外10株CRESS-DNA病毒未分类。本研究揭示现阶段猪腹泻粪便中以RNA病毒为主导,且存在宿主...     

系统发生分析发现牛病毒性腹泻病病毒新基因亚型

本研究对我国首次分离获得的牛源牛病毒性腹泻病毒(BVDV)毒株Changchun 184(CC-184)和猪源牛病毒性腹泻病毒ZM-95进行了遗传衍化关系研究.选择主要抗原E2基因为研究对象,首先应用RT-PCR及套式PCR克隆得到CC-184和ZM-95的E2片段,通过序列测定发现CC-184和ZM-95 E2基因长度分别为1,122bp和1,125bp,各自编码374和375个氨基酸残基.核酸序列同源性比较和系统发生分析表明2株病毒均属于BVDV-1,CC-184与Osloss亲缘关系最近,都属于已有的b基因亚型,其E2基因同源性达91.8%.而ZM-95的E2基因有一个特征性的变异区,包含一个密码子序列插入,这一变异区编码了一段有别于其他瘟病毒的五肽氨基酸序列HYKKK.结果还表明ZM-95与BVDV-1现有的5个基因亚型的亲缘关系均较远,E2基因同源性最高(与Oregonc24v)只有72.4%.而BVDV 1亚型内毒株间的同源性大于85%,亚型间的同源性在69%～75%之间,充分说明ZM-95是BVDV-1中一个新发现的基因亚型.通常认为猪源BVDV来源于牛,应该与牛源BVDV有十分近的遗传关系,但是本研究发现ZM-95与其他已知牛源BVDV较低的基因同源性说明猪源BVDV还具有独立的遗传衍化与传播来源的可能性.     

一株猪源盖塔病毒的分离鉴定及遗传演化分析

盖塔病毒（Getah virus,GETV）是一种人畜共患病毒,近年来在动物中的感染时有发生,监测其流行情况以及控制其传播对公共卫生方面至关重要。本研究对一猪场流产胎儿脾脏样品进行二代测序,与NCBI数据库比对后,发现该序列与GETV HNJZ-S2毒株的基因组高度相似。对组织样品进行无菌处理,接种至PK-15细胞,经连续传代培养和空斑纯化,获得一株能在PK-15细胞上稳定生长的分离物,命名为GETV-YL株,并对其进行电镜观察与遗传演化分析。电镜结果显示,病毒颗粒呈球状,直径约为70 nm,有囊膜,表面有甲病毒典型的纤突结构。遗传演化分析结果显示,GETV-YL基因组全长11 689bp,与GenBank中现有的30株GETV全基因组序列相似性为94.4%～99.8%,与中国猪源毒株HNJZ-S2序列相似性最高（99.8%）并处于同一分支。在本研究中,从感染的猪中检测并分离到了GETV,表明该地区应加强对该病毒在猪群中流行情况的监测,并对该地区的蚊子进行病原检测。     

猪圆环病毒2型福建株的全基因组克隆与序列分析

根据GenBank上公布的猪圆环病毒2型全基因序列设计一对扩增PCV-2全基因的引物,建立扩增PCV-2全序列的PCR方法,并应用此方法从福建省不同地区采集的疑似断奶仔猪多系统衰竭综合征(PMWS)的仔猪肺组织病料中扩增出PCV-2全基因组(1 767 bp),将此基因片段克隆入pMD 18-T载体,筛选获得重组质粒pMD-PCV-2,并对其进行序列测定,然后对全基因组进行同源性和遗传进化分析。结果表明,福建省不同地区采集的猪肺组织扩增出的PCV-2全序列与GenBank上公布的的全基因组同源性介于94.9%-99.8%之间,ORF1的同源性介于97.2%-99.9%,ORF2的同源性也很高,介于97.7%-99.8%之间。其中福州株、福清株和漳州株与中国农大报道的12株、郑州株5株、杭州4株、武汉株3株、上海株2株、扬州2株、南京1株和兰州1株共30株在一个进化分支上,同源性也高达99.3%。本研究有助于监测PCV-2的疫源和进化关系,为进一步深入研究福建省生猪猪圆环病毒来源奠定一定基础。     

猪丁型冠状病毒HB-BD株的分离与鉴定

猪丁型冠状病毒(Porcine deltacoronavirus,PDCoV)是一种新的引起仔猪腹泻的冠状病毒,目前国内对PDCoV分离的研究较少。为从腹泻仔猪粪便及肠道内容物中分离鉴定PDCoV,本研究将RT-PCR检测为PDCoV病原阳性的腹泻样本,接种到ST细胞,进行病毒的分离传代。通过观察其细胞病变,RT-PCR和间接免疫荧光方法检测鉴定,并对分离株的S、M、N基因进行测序鉴定及序列分析。结果成功分离得到了PDCoV HB-BD株。经序列同源性分析发现,HB-BD分离株S、M和N基因与近年来国内外的流行毒株同源性很高,核苷酸同源性分别为95.8%～99.1%、98.6%～99.4%和97.8%～99.4%。进化树分析表明HB-BD分离株与中国毒株亲缘关系比其他国家近,处于同一分支。结果证实从腹泻仔猪的肠道内容物中分离并鉴定得到了一株猪丁型冠状病毒,本研究为后续分离株的致病性及生物学特性研究奠定了基础。     

从急性腹泻儿童中检出的人博卡病毒2型的研究

为了调查北京地区急性腹泻患儿中人博卡病毒2型（HBoV2）的流行情况并了解这一病毒的基因组特征,本研究收集2010年11月至2011年10月到首都儿科研究所附属儿童医院门诊就诊的急性腹泻患儿的粪便标本553例,采用荧光实时PCR进行HBoV2 DNA的检测。选择2例病毒载量较高的阳性标本进行HBoV2各基因片段的扩增并测序。将所测到的序列进行拼接后得到完整的基因组序列并与GenBank中的相关序列进行比较分析。结果显示,553例粪便标本中共检出HBoV2阳性标本15例,阳性率为2.7%;各年龄组中,3~6月龄患儿中的HBoV2 DNA阳性检出率最高（4.1%）;所检年度中,7月份阳性检出率最高（7.0%）;15例HBoV2检测阳性的患儿年龄均在2岁以下,其中4例患儿同时检出了诺如病毒,3例患儿同时检出了轮状病毒,1例检出了腺病毒。经测序得到两株接近完整的HBoV2基因组序列BJQ19和BJQ390;序列分析表明,这两株序列的同源性为99.2%,与GenBank中的FJ375129同源性最高,分别为99.1%和99.2%,为典型的HBoV2。上述结果表明,北京地区部分儿童的急性腹泻可能与HBoV2感染相关,且HBoV2感染在低年龄组儿童中更为常见。     

猪戊肝病毒存在准种现象

为研究猪戊肝病毒准种存在情况,采用逆转录-巢式聚合酶链反应法(RT-nested-PCR)对四株猪戊肝病毒(Hepatitis E virus)第2可读框(ORF2)部分序列进行PCR扩增,将产物克隆后,每个毒株分别随机挑取20个阳性克隆测序,进行DNA序列分析。结果显示4株HEV不同克隆间的ORF2核苷酸序列同源性分别为96.8%~99.7%、98.8%~99.7%、98.8%~99.7%和100%,有变异的克隆核苷酸序列与上海株(SAAS-JDY5)同源性为96.8%~100%。由此证实感染戊肝病毒的猪个体内存在HEV准种。     

猪流行性腹泻病毒分子生物学特征

猪流行性腹泻(porcine epidemic diarrhea,PED)是以水泻、呕吐和脱水为特征的一种急性病毒性腹泻.猪流行性腹泻现已成为世界范围内的猪病之一.猪流行性腹泻病毒(Porcine epidemic diarrhea virus,PEDV)是PED的致病因子,是导致类似猪传染性胃肠炎(porcine transmissible gastroenteritis,TGE)临床症状的真正病原.迄今为止已发现PEDV与TGEV[1]、PEDV与PCV混合感染猪[2].已有用蛋黄IgY 预防PED效果的报道[3],还有用弱化的PEDV疫苗对仔猪进行免疫的报道[4],但都对其作用机制未作深入探讨.弄清PEDV的分子生物学特征,针对PED进行特异性免疫,必将对PED的诊断、治疗和综合防治产生深远影响.本文仅就PEDV的分子生物学特征作一综述.     

猪流行性腹泻病毒分子生物学特征

猪流行性腹泻 (ｐｏｒｃｉｎｅｅｐｉｄｅｍｉｃｄｉａｒｒｈｅａ ,ＰＥＤ)是以水泻、呕吐和脱水为特征的一种急性病毒性腹泻。猪流行性腹泻现已成为世界范围内的猪病之一。猪流行性腹泻病毒 (Ｐｏｒｃｉｎｅｅｐｉｄｅｍｉｃｄｉａｒｒｈｅａｖｉｒｕｓ ,ＰＥＤＶ)是ＰＥＤ的致病因子 ,是导致类似猪传染性胃肠炎 (ｐｏｒｃｉｎｅｔｒａｎｓｍｉｓｓｉｂｌｅｇａｓｔｒｏｅｎｔｅｒｉｔｉｓ ,ＴＧＥ)临床症状的真正病原。迄今为止已发现ＰＥＤＶ与ＴＧＥＶ[1] 、ＰＥＤＶ与ＰＣＶ混合感染猪[2 ] 。已有用蛋黄ＩｇＹ预防ＰＥＤ效果的报道[3] …     

In vitro exposure of preimplantation porcine embryos to porcine parvovirus

Early porcine embryos at the four- to eight-cell stage can be infected with either the virulent (NADL-8) or avirulent KBSH strain of porcine parvovirus (PPV) by microinjection or by incubation of embryos with virus. Treatment of embryos by microinjection of virus or incubation in media with virus did not significantly inhibit in vitro development of the embryos when compared with untreated controls. RNA-DNA hybridization was used to identify the presence of virus associated with embryos. It was found that PPV-DNA was present in viable embryos after microinjection of embryos with KBSH and NADL-8 strains of PPV and after incubation of embryos with KBSH strain. The data indicated the presence of replicative virus associated with viable porcine embryos.     

Effects of porcine granulocyte-macrophage colony-stimulating factor on porcine in vitro-fertilized embryos

This study investigated the effects of porcine granulocyte-macrophage colony-stimulating factor (pGM-CSF) on the developmental potential of porcine in vitro-fertilized (IVF) embryos in chemically and semidefined (with BSA) medium. In experiment 1, zygotes were treated with different concentrations of pGM-CSF (0, 2, 10, 100 ng/mL). The results indicated that 10 ng/mL pGM-CSF significantly (P < 0.05) increased blastocyst development and total cell number (15.1% and 53.5, respectively) compared with the control (6.1%, and 38.8, respectively). Comparing blastocyst formation, early and expanded blastocyst formation was significantly higher in the 10 ng/mL-pGM-CSF group than in the control on Days 6 and 7 of the culture period. However, there was no significant difference in cleavage rate. Experiment 2 demonstrated that pGM-CSF influenced the percentage of blastocyst formation and total cell number when pGM-CSF was added during Days 4 to 7 (14.6% and 53.9, respectively) or Days 0 to 7 (15.2% and 54.0, respectively) compared with the control (7.8% and 43.1, respectively) and compared with Days 0 to 3 (8.7% and 42.5, respectively). Similarly, early blastocyst formation rates were significantly higher at Days 4 to 7 than in the control, and expanded blastocyst formation was significantly higher at Days 4 to 7 or Days 0 to 7. No significant difference in cleavage rates appeared among the groups. In experiment 3, in the presence of BSA, pGM-CSF also increased the percentage of embryos that developed to the blastocyst stage and the total cell number (20.3% and 59.8, respectively) compared with the control (14.9% and 51.4, respectively), whereas there was no significant difference in cleavage rate. Experiment 4 found that the total cell number and the number of cells in the inner cell mass (ICM) were significantly increased compared with the control when zygotes were cultured in either porcine zygotic medium (PZM)-3 or PZM-4 supplemented with 10 ng/mL pGM-CSF. The number of trophectoderm (TE) cells was significantly higher in PZM-3 medium supplemented with pGM-CSF than in the control, and the number tended to increase (P = 0.058) in PZM-4 medium supplemented with pGM-CSF. The ratio of inner cell mass to trophectoderm cells was significantly higher in PZM-4 supplemented with 10 ng/mL pGM-CSF, but not in PZM-3. In experiment 5, it was found that the male pronuclear formation rate, monospermic penetration and sperm/oocyte were 95.4%, 37.2%, and 2.4, respectively. Together, these results suggest that pGM-CSF may have a physiological role in promoting the development of porcine preimplantation embryos and regulating cell viability and that addition of pGM-CSF to IVC medium at Days 4 to 7 or 0 to 7 improves the developmental potential of porcine IVF embryos.     

用超滤法从猪血中分离纯化猪血红蛋白

为了给人工红细胞的研究提供较高纯度和浓度的血红蛋白,采用超滤膜分离的方法,通过研究分析,在一定超滤条件,从新鲜猪血中分离纯化得到猪血红蛋白。并应用SDS-PAGE凝胶电泳、紫外-可见分光光度计对纯化后的血红蛋白进行了鉴定分析。经分析,优化的超滤条件为:操作压力0.05Mpa、料液温度12℃;在此条件下分离纯化的猪血红蛋白,纯度达到了99%以上,浓度较纯化前提高了近20倍。     

Restriction of porcine endogenous retrovirus by porcine APOBEC3 cytidine deaminases

Xenotransplantation of porcine cells, tissues, and organs shows promise to surmount the shortage of human donor materials. Among the barriers to pig-to-human xenotransplantation are porcine endogenous retroviruses (PERV) since functional representatives of the two polytropic classes, PERV-A and PERV-B, are able to infect human embryonic kidney cells in vitro, suggesting that a xenozoonosis in vivo could occur. To assess the capacity of human and porcine cells to counteract PERV infections, we analyzed human and porcine APOBEC3 (A3) proteins. This multigene family of cytidine deaminases contributes to the cellular intrinsic immunity and act as potent inhibitors of retroviruses and retrotransposons. Our data show that the porcine A3 gene locus on chromosome 5 consists of the two single-domain genes A3Z2 and A3Z3. The evolutionary relationships of the A3Z3 genes reflect the evolutionary history of mammals. The two A3 genes encode at least four different mRNAs: A3Z2, A3Z3, A3Z2-Z3, and A3Z2-Z3 splice variant A (SVA). Porcine and human A3s have been tested toward their antiretroviral activity against PERV and murine leukemia virus (MuLV) using novel single-round reporter viruses. The porcine A3Z2, A3Z3 and A3Z2-Z3 were packaged into PERV particles and inhibited PERV replication in a dose-dependent manner. The antiretroviral effect correlated with editing by the porcine A3s with a trinucleotide preference for 5' TGC for A3Z2 and A3Z2-Z3 and 5' CAC for A3Z3. These results strongly imply that human and porcine A3s could inhibit PERV replication in vivo, thereby reducing the risk of infection of human cells by PERV in the context of pig-to-human xenotransplantation.     

Glycosphingolipids of porcine pancreas

Neutral and acidic glycosphingolipids were purified from porcine pancreas by chromatography on columns of DEAE-Sephadex and Iatrobeads. The chemical structures of the purified glycolipids were determined by carbohydrate analysis, methylation analysis, enzyme treatment, fatty acid analysis, NMR and IR. The major glycolipid of porcine pancreas was Gal(alpha,1-4)Gal(beta,1-)ceramide. Gangliosides GM3 and GD3 were major acidic components and galactosylceramide 3-sulfate was also found.     

Cryoenzymology of porcine pepsin

Physical and kinetic properties of porcine pepsin have been examined in aqueous methanol solvents at temperatures below ambient to seek evidence for covalent intermediates in the catalyzed hydrolysis of good substrates. It was first demonstrated that aqueous methanol cryosolvents have no significant deleterious effects upon this protein. The addition of methanol does lead to a drastic reduction in the midpoint of the thermal melting curve of pepsin. This could account for rate reductions previously observed in catalysis by this enzyme. This effect is lessened by the addition of active-site ligands including substrates and is fully reversible upon dilution into aqueous solution. Two substrates were chosen which have chromophoric groups on opposite sides of the scissile peptide bond. The UV spectral changes from hydrolysis of Pro-Thr-Glu-Phe-(NO2)Phe-Arg-Leu and the fluorescence spectral changes from hydrolysis of DNS-Ala-Ala-Phe-Phe-OP4P+-CH3 were studied at temperatures down to -60 degrees C. The resulting Arrhenius plots were linear in the region where pepsin exists in the native state with downward curvature exhibited at higher temperatures where the reversible denaturation occurs. No "burst" reactions were observed with either substrate. In addition, efforts at trapping intermediates by low-temperature denaturation and precipitation have provided no evidence for covalent intermediates on the reaction pathway. Although this evidence is negative, we cannot rule out the possibility of the formation of covalent intermediates following an initial rate-limiting step.     

Enucleolation of porcine oocytes

Germinal vesicles (GVs) in immature mammalian oocytes contain prominent nucleoli whose role in the process of oocyte maturation is not fully understood. Here we report that the microsurgical removal of nucleoli from immature fully grown porcine oocytes permits germinal vesicle breakdown and chromosome condensation and the enucleolated oocytes mature up to the second metaphase. Interestingly, the enucleolation of growing oocytes which, although unable to mature, resulted in germinal vesicle breakdown and the formation of a cluster of condensed chromatin. These results indicate that the nucleolus in fully grown oocytes is dispensable at least for nuclear maturation. On the other hand, the results obtained in growing oocytes suggest the role of the nucleolus in the cell cycle regulation.