首页 | 本学科首页   官方微博 | 高级检索  
相似文献
 共查询到20条相似文献,搜索用时 31 毫秒
1.
The transition from non–muscle‐invasive bladder cancer (NMIBC) to muscle‐invasive bladder cancer (MIBC) is detrimental to bladder cancer (BLCA) patients. Here, we aimed to study the underlying mechanism of the subtype transition. Gene set variation analysis (GSVA) revealed the epithelial‐mesenchymal transition (EMT) signalling pathway with the most positive correlation in this transition. Then, we built a LASSO Cox regression model of an EMT‐related gene signature in BLCA. The patients with high risk scores had significantly worse overall survival (OS) and disease‐free survival (DFS) than those with low risk scores. The EMT‐related gene signature also performed favourably in the accuracy of prognosis and in the subtype survival analysis. Univariate and multivariate Cox regression analyses demonstrated that the EMT‐related gene signature, pathological N stage and age were independent prognostic factors for predicting survival in BLCA patients. Furthermore, the predictive nomogram model was able to effectively predict the outcome of BLCA patients by appropriately stratifying the risk score. In conclusion, we developed a novel EMT‐related gene signature that has tumour‐promoting effects, acts as a negative independent prognostic factor and might facilitate personalized counselling and treatment in BLCA.  相似文献   

2.
Although adaptation and environmental conditions can easily predict demographic variation in most savannah ungulates, no study on demographic consequences arising from natural and anthropogenic factors among Serengeti wildebeest (Connochaetes taurinus) sub‐populations in Tanzania has been carried out. Here, I report estimates of annual sex ratio, calf and yearling survival rate and birth seasonality between resident and migratory sub‐populations to explore demographic patterns arising from the different age and sex structure. The results indicate significantly higher female‐biased sex ratios in the resident and almost even sex ratios among individual migrants. The calf recruitment estimated as mother: offspring ratios indicate a more synchronous birth in the migrant than the resident sub‐population. Also, birth seasonality in the migratory sub‐population coincided with seasonal variability of rainfall and the timing of the birth peak was more variable in the migrants than the resident sub‐population. The migratory sub‐population had a higher annual proportional mean calf survival estimate (0.84) than that of the residents (0.44) probably due to higher mortality resulting from predation in the western corridor. However, the proportion of yearling survival estimates was much lower (0.31) in the migrants and relatively higher (0.39) in the residents. Different demographic outcomes resulting from environment, predation, movements and ecological factors including resource competition have conservation implications for the two sub‐populations.  相似文献   

3.
Differing reproductive effort, individual qualities and local environmental conditions can lead to uneven mortality risk among individuals within populations and may result in survival differences according to age and sex. Identification of factors contributing to unequal operational sex ratios has been important for understanding population dynamics and conservation management. In this study, sex‐ and age‐specific mortality was estimated in three wild Grey Partridge populations from analysis of year‐round radiotracking data from 168 individuals. Survival days were counted in three periods defined individually for each bird: the pairing period (covey break‐up to laying of the first egg); the nesting period (between clutch initiation date and failure of the last nesting attempt, or the date when chicks were 14 days old); and the covey period (the end of the nesting period or joining a group until covey break‐up). Predation was the main cause of mortality. A significant effect of age on survival was found during the pairing period, when older individuals paired off faster and survived better. The highest mortality risk overall was found during the nesting period. Furthermore, significantly higher mortality of females was recorded during the nesting period, suggesting that greater investments in reproduction, behaviour at the nest or the quality of nesting habitats can decrease survival of females and cause a male‐skewed sex ratio. No significant effect of age or sex was found during the covey period, or for the year as a whole, but there was a significant difference in annual mortality rates between the three study populations. Our results confirm age‐ and sex‐specific variation of adult mortality in a ground‐nesting bird with biparental care during the annual cycle, documenting differing sensitivities of various population cohorts to predation.  相似文献   

4.
The relationship between metabolism reprogramming and neuroblastoma (NB) is largely unknown. In this study, one RNA‐sequence data set (n = 153) was used as discovery cohort and two microarray data sets (n = 498 and n = 223) were used as validation cohorts. Differentially expressed metabolic genes were identified by comparing stage 4s and stage 4 NBs. Twelve metabolic genes were selected by LASSO regression analysis and integrated into the prognostic signature. The metabolic gene signature successfully stratifies NB patients into two risk groups and performs well in predicting survival of NB patients. The prognostic value of the metabolic gene signature is also independent with other clinical risk factors. Nine metabolism‐related long non‐coding RNAs (lncRNAs) were also identified and integrated into the metabolism‐related lncRNA signature. The lncRNA signature also performs well in predicting survival of NB patients. These results suggest that the metabolic signatures have the potential to be used for risk stratification of NB. Gene set enrichment analysis (GSEA) reveals that multiple metabolic processes (including oxidative phosphorylation and tricarboxylic acid cycle, both of which are emerging targets for cancer therapy) are enriched in the high‐risk NB group, and no metabolic process is enriched in the low‐risk NB group. This result indicates that metabolism reprogramming is associated with the progression of NB and targeting certain metabolic pathways might be a promising therapy for NB.  相似文献   

5.
樟子松人工林细根寿命估计及影响因子研究   总被引:2,自引:1,他引:1       下载免费PDF全文
细根寿命的估计是了解细根生产和死亡的关键, 对了解陆地生态系统碳分配格局和养分循环具有重要意义。该研究采用微根管(minirhizotron)技术, 以23年生樟子松(Pinus sylvestris var. mongolica)人工林为研究对象, 对细根生长和死亡过程进行了连续两年的观测。细根寿命的估计采用Kaplan-Meier方法, 计算细根的平均寿命(mean longevity)、中值寿命(median longevity)和累积存活率(cumulative survival rate), 用对数秩检验(log-rank test)比较单一因素, 包括细根直径、根序、出生季节和土层以及菌根侵染对细根寿命的影响。采用Cox比例风险回归分析方法, 同时分析上述因素对细根存活的影响程度。结果表明, 樟子松细根的生产和死亡具有明显的季节性, 春末和夏季(6月和7月)为生产高峰; 而死亡高峰出现在夏末至秋末, 以及冬季。樟子松细根的平均和中值寿命分别为(322 ± 10)天和(310 ± 15)天, 对数秩检验表明, 仅考虑单一因子时, 细根直径、根序、出生季节和土层以及菌根侵染均对细根寿命有显著影响。Cox回归分析表明, 菌根侵染、细根直径和土层是影响樟子松细根寿命的重要因子。细根直径每增加1 mm, 细根死亡危险率就降低99%, 即相当于寿命延长99%; 细根出生土层每增加1 cm, 其寿命延长5%; 而菌根侵染后, 会导致细根死亡危险率增加175%; 但根序和出生季节的影响不显著。这些发现证实: 林木细根寿命受到内在与外在因素的共同控制, 而多变量回归分析的方法有助于我们全面揭示细根寿命变异的潜在机制。  相似文献   

6.
Regression analyses are central to characterization of the form and strength of natural selection in nature. Two common analyses that are currently used to characterize selection are (1) least squares–based approximation of the individual relative fitness surface for the purpose of obtaining quantitatively useful selection gradients, and (2) spline‐based estimation of (absolute) fitness functions to obtain flexible inference of the shape of functions by which fitness and phenotype are related. These two sets of methodologies are often implemented in parallel to provide complementary inferences of the form of natural selection. We unify these two analyses, providing a method whereby selection gradients can be obtained for a given observed distribution of phenotype and characterization of a function relating phenotype to fitness. The method allows quantitatively useful selection gradients to be obtained from analyses of selection that adequately model nonnormal distributions of fitness, and provides unification of the two previously separate regression‐based fitness analyses. We demonstrate the method by calculating directional and quadratic selection gradients associated with a smooth regression‐based generalized additive model of the relationship between neonatal survival and the phenotypic traits of gestation length and birth mass in humans.  相似文献   

7.
Age‐related changes are usually overlooked in perennial grass research; when they are considered it is usually as a change in plant size (e.g., biomass). Whether other physiological or developmental aspects change as stands age, and how those aspects may impact long‐term stand dynamics, remains unclear. Conventional experimental designs study a single stand over multiple growing seasons and thereby confound age‐related changes with growing season conditions. Here we used a staggered‐start experimental design with three repeated planting years over two growing seasons to isolate growing season effects. We studied changes in Miscanthus × giganteus phenology during its yield‐building stage (first 3 years) and estimated age, growing season and nitrogen (N) effects on development using nonlinear regression parameters. Stand age clearly changed plant growth; faster developmental rates were usually seen in 1‐year‐old stands (young), but because 2‐ and 3‐year‐old stands (mature) emerged 3 months earlier than newly planted stands they produced 30% more stems with 30%–60% more leaves. Nitrogen fertilization modulated some age‐related phenological changes. Fertilized 2‐year‐old stands reached similar stem densities as unfertilized 3‐year‐old stands and had fewer number of senesced leaves like 1‐year‐old stands. In addition, N fertilization had no effect on young M. × giganteus, but extended mature stands’ growing season more than 2 weeks by hastening emergence and delaying senescence. It also delayed flowering regardless of stand age. Our results suggest that, along with changes in size, M. × giganteus stands showed shifts in developmental strategies: young stands emerged later and developed faster, while mature stands grew for longer but more slowly. In temperate regions, where hard frost events are likely to interrupt development in late autumn, rapid early development is critical to plant survival. Nonlinear regression parameter differences proved effective in identifying phenological shifts.  相似文献   

8.
Spatiotemporal variation in survival may be an important driver of multi‐population dynamics in many wild animal species, yet few scientific studies have addressed this issue, primarily due to a lack of sufficiently comprehensive and detailed datasets. Synchrony in survival rates among different, often distant, subpopulations appears to be common, caused by spatially correlated environmental conditions or by movement of animals from different sites such that their ranges overlap. Many seabird populations are effectively isolated during the breeding season because colonies are widely separated, but over the winter, birds disperse widely and there may be much mixing between different populations. The non‐breeding season is also the period of main mortality for seabirds. Using mark–recapture and ring‐recovery data, we tested for spatial, temporal and age‐related correlations in survival of Common Guillemots Uria aalge among three widely separated Scottish colonies that have varying overlap in their overwintering distributions. Survival was highly correlated over time for colonies/age‐classes sharing wintering areas and, except in 2004, was essentially uncorrelated for those with separate wintering areas. These results strongly suggest that one or more aspects of the winter environment are responsible for spatiotemporal variation in survival of British Guillemots, and provide insight into the factors driving large‐scale population dynamics of the species.  相似文献   

9.
This study used computer models to investigate two different strategies for assessing risk in the development of age‐based life‐tables from studbook data sets. One methodology is similar to that currently employed in American Zoo and Aquarium Association population management, which prorates animals at risk within age‐classes. The other follows the method used in human life‐tables that assumes animals are at risk for the entire age‐class. This study concludes that prorating risk may invalidate population growth projections by significantly and unequally over‐estimating fecundity and mortality rates. This effect is most pronounced in species that have distinct breeding seasons (birth pulse populations), seasonal mortality, and small data sets. Recommendations include using a non‐prorated methodology, tabulating life‐tables using only completely known age‐class data, and combining population parameters for emigrations, releases, and deaths for population growth projections. Zoo Biol 20:279–291, 2001. © 2001 Wiley‐Liss, Inc.  相似文献   

10.
Errors‐in‐variables models in high‐dimensional settings pose two challenges in application. First, the number of observed covariates is larger than the sample size, while only a small number of covariates are true predictors under an assumption of model sparsity. Second, the presence of measurement error can result in severely biased parameter estimates, and also affects the ability of penalized methods such as the lasso to recover the true sparsity pattern. A new estimation procedure called SIMulation‐SELection‐EXtrapolation (SIMSELEX) is proposed. This procedure makes double use of lasso methodology. First, the lasso is used to estimate sparse solutions in the simulation step, after which a group lasso is implemented to do variable selection. The SIMSELEX estimator is shown to perform well in variable selection, and has significantly lower estimation error than naive estimators that ignore measurement error. SIMSELEX can be applied in a variety of errors‐in‐variables settings, including linear models, generalized linear models, and Cox survival models. It is furthermore shown in the Supporting Information how SIMSELEX can be applied to spline‐based regression models. A simulation study is conducted to compare the SIMSELEX estimators to existing methods in the linear and logistic model settings, and to evaluate performance compared to naive methods in the Cox and spline models. Finally, the method is used to analyze a microarray dataset that contains gene expression measurements of favorable histology Wilms tumors.  相似文献   

11.
Demographic senescence is increasingly recognised as an important force shaping the dynamics of wild vertebrate populations. However, our understanding of the processes that underpin these declines in survival and fertility in old age remains limited. Evidence for age‐related changes in foraging behaviour and habitat use is emerging from wild vertebrate studies, but the extent to which these are driven by within‐individual changes, and the consequences for fitness, remain unclear. Using longitudinal census observations collected over four decades from two long‐term individual‐based studies of unmanaged ungulates, we demonstrate consistent within‐individual declines in home range area with age in adult females. In both systems, we found that within‐individual decreases in home range area were associated with increased risk of mortality the following year. Our results provide the first evidence from the wild that age‐related changes in space use are predictive of adult mortality.  相似文献   

12.
Child mortality (the mortality of children less than five years old) declined considerably in the developing world in the 1990s, but infant mortality declined less. The reductions in neonatal mortality were not impressive and, as a consequence, there is an increasing percentage of infant deaths in the neonatal period. Any further reduction in child mortality, therefore, requires an understanding of the determinants of neonatal mortality. 209,628 birth and 2581 neonatal death records for the 1998 birth cohort from the city of S?o Paulo, Brazil, were probabilistically matched. Data were from SINASC and SIM, Information Systems on Live Births and Deaths of Brazil. Logistic regression was used to find the association between neonatal mortality and the following risk factors: birth weight, gestational age, Apgar scores at 1 and 5 minutes, delivery mode, plurality, sex, maternal education, maternal age, number of prior losses, prenatal care, race, parity and community development. Infants of older mothers were less likely to die in the neonatal period. Caesarean delivery was not found to be associated with neonatal mortality. Low birth weight, pre-term birth and low Apgar scores were associated with neonatal death. Having a mother who lives in the highest developed community decreased the odds of neonatal death, suggesting that factors not measured in this study are behind such association. This result may also indicate that other factors over and above biological and more proximate factors could affect neonatal death.  相似文献   

13.
ABSTRACT The main cause of nest mortality for most bird species is predation and nest survival rates often vary in relation to time‐specific variables. Few investigators have examined time‐specific patterns of nest survival in Neotropical birds, and most such studies have focused on tropical and subtropical species. To better understand age‐related patterns of nest survival, we studied nest survival of Red‐crested Cardinals (Paroaria coronata, Thraupidae) in a south‐temperate forest in Argentina. We modeled daily nest survival rates (DSR) using program MARK. We examined the relationship between nest age and nest survival rate, controlling for the effects of physical characteristics of nest sites and progression of the breeding season. We monitored 367 nests for a total of 4018 exposure days. We found that DSR increased with nest age and was higher in small isolated patches than in large continuous patches of forests. The increase of DSR with nest age could be a consequence of more vulnerable nests being predated early in the nesting cycle or a result of parents defending nests more vigorously as nestlings age because of their increasing reproductive value. Open areas of grassland that surrounded the small isolated patches of forests in our study may have been a barrier to predator movements, possibly explaining the lower predation rates. Nest survival rates in our study were lower than those reported for tropical or Nearctic temperate birds, but similar to those reported in other studies of Neotropical temperate birds. Reasons for the low nest survival rates of Neotropical temperate birds remain unclear, and additional studies of predator communities are needed to help elucidate this topic.  相似文献   

14.
Prenatal exposure to carcinogenic polycyclic aromatic hydrocarbons (c‐PAHs) through maternal inhalation induces higher risk for a wide range of fetotoxic effects. However, the most health‐relevant dose function from chronic gestational exposure remains unclear. Whether there is a gestational window during which the human embryo/fetus is particularly vulnerable to PAHs has not been examined thoroughly. We consider a longitudinal semiparametric‐mixed effect model to characterize the individual prenatal PAH exposure trajectory, where a nonparametric cyclic smooth function plus a linear function are used to model the time effect and random effects are used to account for the within‐subject correlation. We propose a penalized least squares approach to estimate the parametric regression coefficients and the nonparametric function of time. The smoothing parameter and variance components are selected using the generalized cross‐validation (GCV) criteria. The estimated subject‐specific trajectory of prenatal exposure is linked to the birth outcomes through a set of functional linear models, where the coefficient of log PAH exposure is a fully nonparametric function of gestational age. This allows the effect of PAH exposure on each birth outcome to vary at different gestational ages, and the window associated with significant adverse effect is identified as a vulnerable prenatal window to PAHs on fetal growth. We minimize the penalized sum of squared errors using a spline‐based expansion of the nonparametric coefficient function to draw statistical inferences, and the smoothing parameter is chosen through GCV.  相似文献   

15.
Identifying factors affecting juvenile survival is important to understanding the dynamics of populations and may also provide insights into life history theory and the selective forces shaping evolution. Quantifying the relative influence of the various potential selective forces for the post‐birth, maternal dependency, and independent periods is difficult and often limits investigators to estimating a single juvenile survival rate for the first year of life, or from birth to recruitment. We examined survival of individually marked Weddell seal Leptonychotes weddellii pups during the maternal dependency period in Erebus Bay, Antarctica from 2005–2007. We used mark‐recapture models to evaluate competing a priori hypotheses regarding variation in daily pre‐weaning survival rates (φ) during the first 42 days of age. The a priori model receiving the most support from the data supported several of our predictions: increased with pup age and was higher for pups born later in the season and to older mothers. Increases in with increasing pup age may have been due to improved resilience to the environment, phenotypic selection against the frailest pups, or both. Maternal age was more important to than was maternal experience or age of primiparity, potentially indicating that age‐related increases in body mass allow greater offspring provisioning, or age‐related improvements in competitive abilities benefit offspring during the period of maternal care. Depending on the timing of birth and the age of the mother, 42 days ranged from 0.79 (SE = 0.05) to 0.98 (SE = 0.01). These exceptionally high pre‐weaning survival rates contrast with estimates from other large terrestrial and marine mammal species where neonate survival is considerably lower and suggest that in species with similar life histories, pre‐weaning survival probability may be buffered from both predators and environmental fluctuations during the period of maternal nutritional dependency. Climatic changes affecting stability of ice used for pupping substrate or extent of fast‐ice buffering pupping colonies from predators have the potential to reduce pre‐weaning survival and may have important implications for population growth rates.  相似文献   

16.
This paper examines the determinants of infant and child mortality variations in Jordan, Yemen, Egypt, and Tunisia using data from WFS surveys. The analysis considers biological correlates of mortality--mother's age, birth order, birth interval, and previous infant loss--and several social factors--mother's and father's education, mother's residence, father's occupation, and mother's work experience since marriage. The estimates for the 4 countries show large variations in the mortality rates and an expected pattern of declining infant and child mortality during the period of 20 years prior to the survey. Further, the proportionate decline in child mortality in each country was generally greater than the proportionate decline in infant mortality. A persistent pattern of higher child mortality for females than for males is found, suggesting preferential care and treatment of male offspring. The higher mortality risk is found for infants born to very young and very old mothers, with short previous birth intervals, of higher birth orders, and where the previous infant had died. Among the socioeconomic characteristics, the education of the mother and rural-urban residence are found to affect infant survival. In childhood, among the demographic factors, only birth interval shows a significant effect on mortality. The risk of child mortality decreases considerably with the increase in the birth interval. The analysis of the effect of breastfeeding on mortality, although based on limited information, clearly shows the beneficial effect of breastfeeding on the infant's survival, especially during the early months of life. For all countries, the mortality rate for the non-breastfeeders is substantially higher than for the breastfeeders even when the effect of the other covariates is controlled.  相似文献   

17.
It is generally assumed that the daily probability of survival of mosquitoes is independent of age. To test this assumption we have conducted a three‐year experimental fieldwork study (2005–2007) at Fortaleza‐CE in Brazil, determining daily survival rates of the dengue vector Aedes aegypti (L.). Survival rates of adult Ae. aegypti may be age‐dependent and the statistical analysis is a sensitive approach for comparing patterns of mosquito survival. The mosquito survival data were better fit by a Weibull survival function than by the more traditionally used Gompertz or logistic survival functions. Gompertz, Weibull, or logistic survival functions often fit the survival, and the tails of the survival curves usually appear to fall between the values predicted by the three functions. We corroborate that the mortality of Ae. aegypti in semi‐natural conditions may no more be considered as a constant phenomenon during the life of adult mosquitoes but varies according to the age and environmental conditions under a tropical climate. This study estimates the variability in the survival rate of Ae. aegypti and environmental factors that are related to such variability. The statistical analysis shows that the fitting ability, concerning the hazard function, was in decreasing order: Seasonal Cox, the three‐parameter Gompertz, and the three‐parameter Weibull, that was similar to the three‐parameter logistic. The advantage of using the Cox model is that it is convenient for exploring the relationship between survival and several explanatory variables. The Cox model has the advantage of preserving the variable in its original quantitative form and of using a maximum of information. The survival analyses indicate that mosquito mortality is both age‐ and environment‐dependent.  相似文献   

18.
目的:探讨重症医学病房内早产儿的相关性危险因素对其死亡的影响.方法:回顾性收集我重症医学病房从2008年6月1日至2011年8月31日收治的早产患儿共45例,分组后,对相关死亡危险因素进行logistics回归分析研究.结果:45例早产儿死亡的相关危险因素为出生体重(OR=4.157),体重越低,死亡率越高.结论:加强孕期保健,优化围产期管理,促进胎儿成熟,加强对低出生体重儿的管理,可提高早产儿的存活率和存活质量.  相似文献   

19.
Survival through periods of resource scarcity depends on the balance between metabolic demands and energy storage. The opposing effects of predation and starvation mortality are predicted to result in trade‐offs between traits that optimize fitness during periods of resource plenty (e.g., during the growing season) and those that optimize fitness during periods of resource scarcity (e.g., during the winter). We conducted a common environment experiment with two genetically distinct strains of rainbow trout to investigate trade‐offs due to (1) the balance of growth and predation risk related to foraging rate during the growing season and (2) the allocation of energy to body size prior to the winter. Fry (age 0) from both strains were stocked into replicate natural lakes at low and high elevation that differed in winter duration (i.e., ice cover) by 59 days. Overwinter survival was lowest in the high‐elevation lakes for both strains. Activity rate and growth rate were highest at high elevation, but growing season survival did not differ between strains or between environments. Hence, we did not observe a trade‐off between growth and predation risk related to foraging rate. Growth rate also differed significantly between the strains across both environments, which suggests that growth rate is involved in local adaptation. There was not, however, a difference between strains or between environments in energy storage. Hence, we did not observe a trade‐off between growth and storage. Our findings suggest that intrinsic metabolic rate, which affects a trade‐off between growth rate and overwinter survival, may influence local adaptation in organisms that experience particularly harsh winter conditions (e.g., extended periods trapped beneath the ice in high‐elevation lakes) in some parts of their range.  相似文献   

20.
Both intrinsic and extrinsic factors recorded at individual nests can predict offspring fitness and survival but few studies have examined these effects in the tropics. We recorded nestling survival, post‐fledging survival and age at first return of Roseate Terns breeding at Aride Island, Seychelles, over a 12‐year period (1998–2009). Nest data recorded at the egg, nestling and fledging stages were collected during six breeding seasons (1998, 2001–2005) and a capture‐mark‐recapture dataset of six cohorts of fledglings was obtained from 2001–2009. Logistic regression models were used to assess the predictive effect of reproductive variables on fledging success, while multistate capture‐mark‐recapture models were used to estimate post‐fledging survival and return–recruitment probabilities to the natal site. Nestling survival probability increased with earliness of laying and was negatively affected by tick infestation during the growth period (0–23 days). Fledging probability was also positively related to chick body condition, whereas other pre‐fledging reproductive parameters such as clutch size and egg size were not influential. A multistate modelling of age‐specific survival and return–recruitment (transition) rates found that first‐year survival differed between cohorts and was also negatively affected by tick infestation. Annual survival stabilized from age 2 onwards at 0.83 ± 0.02. Transition rates were positively related to body condition at fledging, with heavier individuals returning for the first time to the natal colony at a younger age compared with lighter individuals. These results highlight the importance of local conditions encountered by tropical seabirds during the breeding season in shaping demographic parameters.  相似文献   

设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号