The soil C pool in different agroecosystems derived from the dry tropical forest of Guanacaste, Costa Rica

Inventories of soil C pools are still lacking from tropical sites. Our objective was to assess total C and N concentrations in the different mineral soil fractions down to 50 cm depth in relation to selected physical and chemical properties of 5 ecosystems at La Flor Sustainable Center in Guanacaste, Costa Rica. The ecosystems studied were a derived savanna with scattered trees, a gallery forest, an abandoned Mango indigofera L. plantation, a Citrus sp. plantation, and a Saccharum officinarum L. (sugarcane) plantation. Significant differences were found for the main fixed factor ecosystem for all variables analyzed (ANOVA). The TSC concentration was significantly higher in the sugarcane plantation compared to the rest of land use systems. The TSC concentration decreased significantly with increase in depth in all ecosystems and ranged from 20.3–38.3 to 4.3–20.9 g kg⁻¹ in the 0–10 and 40–50 cm depth, respectively. In all cases, the clay + silt fraction (<50 μm) contained the highest C concentration. N concentration (0–10 cm depth) at La Flor ranged from 0.32 to 0.19%, and decreased in the order sugarcane > Curatella savanna > Mango and Citrus plantations > gallery forest. A principal component analysis (PCA) performed with all variables studied showed that the ordination of land uses (ecosystems) in the factorial plane defined by the first two axes was significant (Monte Carlo permutation test, P < 0.0001). The highest TSC pool down to 50 cm depth was obtained in the sugarcane plantation (160 Mg C ha⁻¹) while less C was found in the rest of ecosystems, i.e. from 66 (gallery forest) to 80 Mg C ha⁻¹ (Curatella savanna). The TSC concentration obtained in the sugarcane plot is likely the result of the incorporation of surface residues into the soil that would have otherwise been lost through burning, which is the current practice in the region. Further studies on C stabilization in the clay fraction are thus needed to test the hypothesis of soil C enrichment due to residue management. Finally, trade-offs are to be considered for both preservation of the fragile dTf and the productivity of derived land uses that increases soil C at the same time.     

Genetic admixture and population substructure in Guanacaste Costa Rica

The population of Costa Rica (CR) represents an admixture of major continental populations. An investigation of the CR population structure would provide an important foundation for mapping genetic variants underlying common diseases and traits. We conducted an analysis of 1,301 women from the Guanacaste region of CR using 27,904 single nucleotide polymorphisms (SNPs) genotyped on a custom Illumina InfiniumII iSelect chip. The program STRUCTURE was used to compare the CR Guanacaste sample with four continental reference samples, including HapMap Europeans (CEU), East Asians (JPT+CHB), West African Yoruba (YRI), as well as Native Americans (NA) from the Illumina iControl database. Our results show that the CR Guanacaste sample comprises a three-way admixture estimated to be 43% European, 38% Native American and 15% West African. An estimated 4% residual Asian ancestry may be within the error range. Results from principal components analysis reveal a correlation between genetic and geographic distance. The magnitude of linkage disequilibrium (LD) measured by the number of tagging SNPs required to cover the same region in the genome in the CR Guanacaste sample appeared to be weaker than that observed in CEU, JPT+CHB and NA reference samples but stronger than that of the HapMap YRI sample. Based on the clustering pattern observed in both STRUCTURE and principal components analysis, two subpopulations were identified that differ by approximately 20% in LD block size averaged over all LD blocks identified by Haploview. We also show in a simulated association study conducted within the two subpopulations, that the failure to account for population stratification (PS) could lead to a noticeable inflation in the false positive rate. However, we further demonstrate that existing PS adjustment approaches can reduce the inflation to an acceptable level for gene discovery.     

Arthropod collection for biodiversity prospection in the Guanacaste Conservation Area, Costa Rica

This study describes the results and collection practices for obtaining arthropod samples to be studied as potential sources of new medicines in a bioprospecting effort. From 1994 to 1998, 1800 arthropod samples of 6-10 g were collected in 21 sites of the Area de Conservaci6n Guancaste (A.C.G) in Northwestern Costa Rica. The samples corresponded to 642 species distributed in 21 orders and 95 families. Most of the collections were obtained in the rainy season and in the tropical rainforest and dry forest of the ACG. Samples were obtained from a diversity of arthropod orders: 49.72% of the samples collected corresponded to Lepidoptera, 15.75% to Coleoptera, 13.33% to Hymenoptera, 11.43% to Orthoptera, 6.75% to Hemiptera, 3.20% to Homoptera and 7.89% to other groups. Different life stages per arthropod species were obtained in most samples, 54.26% of them were adults, 19.90% corresponded to larvae, 6.46% to pupae, 6.12% to pre-pupae, 2.07% to nymphs and 3.74% to other stages. Other materials associated to insects like frass represented 11.20% of the samples collected. Several collecting methods were explored, based on the possibility of accessing the necessary amount of material causing the less impact. Most of the samples were obtained by manual collection (44.38%),. followed by insects breeding (25.73%), light traps (18.80%), different types of nets (10.52%) and other methods (0.16%). In general, collecting methods and practices excluded the use of solvents, mixing different species or life stages in the same bag, which might have introduced undesirable effects in the screening systems for new compounds. Based on the possibility of finding new chemicals in similar samples associated to one arthropod species, the collecting strategy included the generation of several samples from same species, separated according to differences in life stages, collecting sites, ecosystems. seasons, feeding materials or behavioral aspects. This strategy allowed the generation a larger number of samples submitted to bioassays in different areas of pharmaceutical research.     

Population trends of the mantled howler groups of La Pacifica,Guanacaste, Costa Rica

A complete survey of La Pacifica in Guanacaste Province, Costa Rica was conducted in July 1984 in order to determine whether the howler (Alouatta palliata) population had declined since 1972 as a result of deforestation. During the 6-day survey, 257 howlers were located, representing 16 different social groupings and nine solitary animals. The total number of howlers, the number and location of groups, and the age-sex composition were very similar to a 1972–1976 survey of the same population. Age-sex composition of La Pacifica howler groups was similar to those of another population of mantled howlers in Costa Rica and of populations in Mexico and in Panama, although La Pacifica had a higher mean number of adult females per group. There was no evidence to support the hypothesis that the La Pacifica howler population has declined in recent times.     

Biology and fishery of the lobster Panulirus gracilis in Playa Lagarto, Guanacaste, Costa Rica

Panulirus gracilis is a high valuable lobster species with considerable captures along the tropical Pacific coast. In this study, I present some biological and fishery parameters described after a sample of 843 lobsters, landed in Playa Lagarto from November 2007 to October 2008. From landing records, a total of 74.9% of lobsters were below the minimum legal catch size (80 mm CL). Carapace lengths were in the range of 42.8 and 143.6 mm for males and 115 and 35.8 mm for females. The size structure showed a wide overlapping of population segments, and a trend to increase with depth, where lung diving and "hooka" diving operations take place. Sex ratio was 1.36 M:H. The relationship between weight and LC revealed that females are heavier than males of the same size, and this difference was significant (p < 0.05). The von Bertalanffy growth parameters for males and females respectively (K = 0.45-0.38, LC(infinity) = 166.9-121.7) showed accelerated growth compared to other species. Males observed a higher growth rate than females. Furthermore, natural mortality (M), total mortality (Z) and fishing mortality (F) was higher in males (0.49-2.34-1.92) than in females (0.47-1.82-1.42). Recruitment was continuous for both sexes during the year, with an elevated intensity of 18.5% in July. Under the current fishing regime the population could be at risk of collapse, as indicated by the high exploitation rate (E) 0.80     

Male and mosquito larvae survey at the Arenal-Tempisque irrigation project, Guanacaste, Costa Rica

A monitoring of male and larvae of mosquitoes was conducted during 1991-1994, at the Irrigation Project in Arenal-Tempisque, Guanacaste, Costa Rica. CDC CO2-baited traps were used to collect adults of mosquitoes and dips were used for immatures of culicids. A total of 1,480 larvae and 1,129 males of culicids were identified resulting in, Aedes with 6 species, Anopheles, Mansonia and Psorophora with 2 species, Culex with 21 species and Haemagogus, Limatus, Toxorhynchites and Uranotaenia with only one species each. The results indicate that, as occurred in other countries, irrigation projects must be under strict monitoring programs to prevent and control possible health problems in which mosquitoes act as vectors.     

Rare hemoglobinopathies in Costa Rica]

Among the rare hemoglobinopathies found in Cost Rica are those of the Alfa, Beta, and Delta chains. Among these, Hb Cubujuquí, an undescribed variant, is of special interest. There was an association between the different thalassemic syndromes and their combinations with abnormal hemoglobins.     

Extensive land use and the logic of the latifundio: A case study in Guanacaste Province,Costa Rica

Traditional explanations of extensive land use on large unproductive estates in Latin American have failed to understand important aspects of the economic and political logic behind such enterprises. This article examines the reasons for the low productivity of cattle ranches over a period which spans the consolidation of haciendas in a frontier zone and their subsequent integration into the international beef market. The persistence of extensive land use in a modern export economy is explained as resulting from characteristics of the world beef market, local ecology, the Costa Rican credit and tax systems, and the social composition and political power of the landowning class.     

Phytogeography of the bryophyte floras of oak forests and páramo of the Cordillera de Talamanca, Costa Rica

Aim Central America is a biogeographically interesting area because of its location between the rich and very different biota of North and South America. We aim to assess phytogeographical patterns in the bryophyte floras of oak forests and páramo of the Cordillera de Talamanca, Costa Rica. Location Tropical America, in particular the montane area of Cordillera de Talamanca, Costa Rica. Methods The analysis is based on a new critical inventory of the montane bryophyte flora of Cordillera de Talamanca. All species were assigned to phytogeographical elements on the basis of their currently known distribution. Absolute and percentage similarities were employed to evaluate floristic affinities. Results A total of 401 species [191 hepatics (liverworts), one hornwort, 209 mosses] are recorded; of these, 251 species (128 hepatics, one hornwort, 122 mosses) occur in oak forests. Ninety‐three per cent of all oak forest species are tropical in distribution, the remaining 7% are temperate (4%) and cosmopolitan (3%) species. The neotropical element includes almost 74% of the species, the wide tropical element (pantropical, amphi‐atlantic, amphi‐pacific) only 19%. A significant part of the neotropical species from oak forests are species with tropical Andean‐centred ranges (27%). As compared with bryophyte species, vascular plant genera in the study region are represented by fewer neotropical, more temperate and more amphi‐pacific taxa. Bryophyte floras of different microhabitats within the oak forest and epiphytic bryophyte floras on Quercus copeyensis in primary, early secondary and late secondary oak forest show a similar phytogeographical make‐up to the total oak forest bryophyte flora. Comparison of oak forest and páramo reveals a greater affinity of the páramo bryophyte flora to temperate regions and the great importance of the páramo element in páramo. Surprisingly, oak forests have more Central American endemics than páramo. Main conclusions (1) Providing first insights into the phytogeographical patterns of the bryophyte flora of oak forests and páramo, we are able to confirm general phytogeographical trends recorded from vascular plant genera of the study area although the latter were more rich in temperate taxa. (2) Andean‐centred species are a conspicuous element in the bryophyte flora of Cordillera de Talamanca, reflecting the close historical connection between the montane bryophyte floras of Costa Rica and South America. (3) High percentages of Central American endemics in the bryophyte flora of the oak forests suggest the importance of climatic changes associated with Pleistocene glaciations for allopatric speciation.     

Halipegus eschi n. sp. (Digenea: Hemiuridae) in Rana vaillanti from Guanacaste Province, Costa Rica

Halipegus eschi n. sp. is described from the esophagus of Rana vaillanti from Guanacaste Province, Costa Rica. The new species differs from other known species of Halipegus on the basis of relative testis size, lateral extent of the uterus, vitelline follicle arrangement, egg size, and polar filament length.     

Dermotoglyphics in the Bribri and Cabear Amerindians from Costa Rica]

Digital and palmar dermatoglyphic patterns were analysed for 286 male and female Bribri and Cabecar Amerindians of Chibcha ascendancy from four populations located in southeastern Costa Rica. There was no significant difference among Pacific and Atlantic Cabecar samples, with the exception of the bc and cd ridge count. However, the Bribri groups present differences for 22 features, though the largest differences are between Bribri and Cabecar Pacific populations. A comparison with other Latin-American indians evidence that dermatoglyphic patterns of Bribri and Cabecar tribes are within the expected range, but it is important to notice the high frequency of digital arcs and the low frequency of worls. The results are similar to those observed using other genetic markers in the same populations, and demonstrate the discriminable capacity of the dermatoglyphics to tribal level for taxonomic and evolutionary studies.     

Population dynamics of a stingless bee community in the seasonal dry lowlands of Costa Rica

This study examines the dynamics of a population of stingless bee colonies in the seasonal tropics of Guanacaste, Costa Rica. The community in a forest remnant was compared with that in surrounding deforested areas. During this 4-year study, a total of 192 wild stingless bee colonies were recorded, belonging to 14 species. Population dynamics were highly seasonal. Colony mortality peaked at the end of the wet season (October–November) while colony reproduction was most frequent during the dry season (December to April). Colony survival was not lower in founder colonies compared to established colonies. The most common species, T. angustula, had a much lower probability of annual survivorship in the forest (P = 0.74) than in deforested areas (P = 0.92). This results in an estimated colony life span for T. angustula of 3.8 years in the forest and 12.5 years in deforested areas. T. angustula should swarm once every two years to maintain its forest population, but only once every 12.5 years to maintain its population in the deforested areas. Survivorship of all other stingless bees was similar in the forest and deforested areas and did not significantly differ among the species. The average annual survivorship probability of these species was as high as 0.96, resulting in an estimated colony life span of 23.3 years. On average only one swarm per 20 years is needed to maintain their populations. Life history of the sympatric Africanised honey bee clearly differed from that of the stingless bees, with much lower annual survivorship probabilities for both founder (none survived) and established colonies (P = 0.33). These figures support the general idea that stingless bees invest more in colony survival rather than reproduction, but also show that life history is affected by both species and location. Received 27 October 2004; revised 8 March and 15 June 2005; accepted 5 July 2005.     

Isolation of Vibrio cholerae no-01 in the Gulf of Nicoya, Costa Rica]

In a bacteriological study on samples of bivalves, mud and surface waters from the Gulf of Nicoya, Costa Rica, 18 strains of non-01 Vibrio cholerae and 50 of V. mimicus were isolated. The samples were enriched in alkaline peptone water, and streaked on MacConkey and inositol-brilliant green bile agars. Biochemical and serological tests were used for their identification. Both species were isolated from all sampling sites (Lepanto, Jicaral and Puntarenas) with either of the two agar media, even though these were not specific for vibrios.     

Criteria in evaluating the nutritional status of the child in Costa Rica]

The present discussion reveals the need to review and substitute certain criteria currently used in Costa Rica in regards to: a) nutritional recommendations; b) standards of weight; and c) classification and evaluation of the nutritional status. Such concepts will lead to the adoption of alternate criteria and standards for a better assessment of malnutrition in children. Computation of the adequacy of the diet should be made as a function of the child's weight and not of his age (Sukhatme approach). The adoption of the Weight for Height and Height for Age criteria are recommended as a substitute for Weight for Age. The normal curves of weight and height of the National Center for Health Statistics (NCHS, USA) would be more accurate criteria. Systematic collections of weights and heights at the national level should be made, and the data processed by simple and rapid programs to discover and assess growth deficiencies. The philosophy and orientation, scientific basis, definition of target population, infrastructure and logistics of the nutrition intervention programs of Costa Rica, should be critically revised in the light of the present report. This particularly applies to the Program of Social Development and Family Allowances.     

The dystrophinopathies in Costa Rica

A five-years long study aiming to describe the basic genetic epidemiology of the dystrophinopathies in Costa Rica recruited 31 patients with clinical symptoms of DMD/BMD at the National Children's Hospital (HNN). This center is the obligate reference hospital of the national health system for genetic diseases, however, the geographic origin of the patients, a low percentage of deletions and a high proportion of de novo mutations found among them indicate that a significant ascertainment bias impedes a substantial scientific approach to confront and alleviate the problems posed by these severe diseases in Costa Rica.     

Admissions for protein-calorie malnutrition at the National Children's Hospital, Costa Rica, 1975]

The hospital records of 478 children with protein-calorie malnutrition (PCM) were reviewed. These represented all children diagnosed as malnourished during 1975 (3.6 per cent of all hospital admittances in the National Children's Hospital); 52% of the cases were infants less than 6 months of age; 28% had low birth weight, a rate much in excess of the prevalence of low birth weight in the general population of Costa Rica (7%). In general, malnourished children had been weaned early, 75% during the first month of life. A considerable number of children belonged to "malnourishing families" which have particular characteristics favorable to establishment of malnutrition in the family. Thus, 36% of their siblings had also been admitted with malnutrition at a previous date to that of this study.