Assessment of agroeconomic indices in polycultures of lettuce, rocket and carrot through uni- and multivariate approaches in semi-arid Brazil

The polyculture among vegetables is an activity that to have good results, needs a proper planning. Although it often requires more labor, has several advantages over monoculture, among them is that polycultures are generally are more productive, provide with productivity of various plant constituents and a more balanced human diet, contribute to economic return, economic and yield stability, social benefits and farmer's direct participation in decision-making. The objective of this study was to evaluate agroeconomic indices of polycultures derived from the combination of two cultivars of lettuce with two cultivars of rocket in two cultures strip-intercropped with carrot cultivar ‘Brasilia’ through uni-multivariate approaches in semi-arid Brazil. The experimental design used was of randomized complete blocks with five replications and the treatments arranged in a factorial scheme of 2 × 2. The treatments consisted of the combination of two lettuce cultivars (Babá de Verão and Tainá) with two rocket cultivars (Cultivada and Folha Larga) in two cultures associated with carrot cv. Brasília. In each block were grown plots with two lettuce cultivars and two rocket cultivars, and carrot in sole crop. In each system was determined the lettuce leaf yield, rocket green mass yield and carrot commercial yield. Agrieconomic indices such as operational cost, gross and net income, monetary advantage, rate of return, profit margin, land equivalent ratio and yield efficiency for DEA were used to measure the efficiency of intercropping systems. In the bicropping of lettuce and rocket associated with carrot cv. ‘Brasilia’, suggests the use of lettuce cultivar ‘Tainá’ combined with rocket cultivars ‘Cultivada’ or ‘Folha Larga’. It was observed significant effect of lettuce cultivars in the evaluation of polycultures of lettuce, carrot and rocket, with strong expression for the lettuce cultivar ‘Tainá’. Both uni- and multivariate approaches were effective in the discrimination of the best polycultures.     

Differentiation of closely related oyster fungi Pleurotus pulmonarius and P. ostreatus by mating and molecular markers

Matings and RAPD-PCR analysis were used to differentiate two closely related basidiomycetes fungi, Pleurotus pulmonarius and P. ostreatus, which are widespread in Russian forest biocenoses with moderate continental climate. Monokaryon-monokaryon (mon-mon) and dikaryon-monokaryon (di-mon) matings demonstrated complete reproductive isolation of the two species, which have partly overlapping morphological traits. The prevalence of a particular species in nature was shown to depend to a great extent on the natural conditions, namely, the day and night temperature fluctuations. The clustering of natural Pleurotus strains displayed two trends: one was associated with natural reproductive isolation of the two species (D = 0.61) and the other, with the geographical factor (D = 0.39). A relatively recent origin is suggested for the divergence of the two species and the reproductive barrier between them. Adaptation to natural conditions was considered to be the main factor causing the divergence of natural Pleurotus populations and, eventually, allopatric speciation.     

Geographic structure of genetic and phenotypic variation in the hybrid zone between Quercus affinis and Q. laurina in Mexico

Analyzing the structure of hybrid zones is important for inferring their origin, dynamics and evolutionary significance. We examined the geographic structure of phenotypic and genetic variation in the contact zone between two Mexican red oaks, Quercus affinis and Q. laurina. A total of 105 individuals from seven populations were sampled along a 600‐km latitudinal gradient representing the distribution area of the two species and their contact zone. Individuals were genotyped for nine nuclear and four chloroplast DNA microsatellite loci (ncSSR and cpSSR, respectively), and characterized for several leaf and acorn traits. The cpSSR data revealed extensive haplotype sharing among populations of the two species, while a Bayesian assignment analysis based on ncSSRs identified two main genetic groups, each corresponding to one of the species, and two populations in the contact zone showing evidence of admixture. The proportion of genetic ancestry in the populations was strongly associated with latitude and showed a pattern of variation with the shape of a narrow sigmoidal cline. The variation in three of the seven phenotypic traits was partially congruent with molecular variation, while the other traits did not conform to a geographic cline but instead were correlated with environmental variables. In conclusion, the hybrid zone between the two oak species has some of the characteristics of a tension zone, but heterogeneous variation across traits suggests differential introgression and the action of extrinsic selection.     

Purification and Molecular and Immunological Characterization of a Unique Phosphoribulokinase from the Green Alga Selenastrum minutum

A unique phosphoribulokinase (ADP:D-ribulose 5-phosphate 1-phosphotransferase, EC 2.7.1.19) has been purified to homogeneity from the green alga Selenastrum minutum. The enzyme has a native molecular mass of about 83 kilodaltons and a native isoelectric point of 5.1. The enzyme consists of two different-sized subunits of 41 and 40 kilodaltons, implying that it is a heterodimer. This is the first report of a eukaryotic heterodimeric phosphoribulokinase. The in vivo existence of two nonidentical subunits of S. minutum phosphoribulokinase was confirmed by western blot analysis of crude protein extracts from trichloroacetic acid-killed cells. These two subunits were immunologically similar, as rabbit immunoglobulin G affinity purified against the 41 kilodalton subunit of S. minutum phosphoribulokinase (PRK) cross-reacts with the 40 kilodalton subunit and vice versa. Antibodies against S. minutum phosphoribulokinase also cross-react with the spinach enzyme. NH₂-terminal sequencing revealed that the two S. minutum PRK subunits shared a considerable degree of structure homology with each other and with the enzymes from spinach and Chlamydomonas reinhardtii, but not with PRK from Rhodobacter sphaeroides. There are, however, differences between the NH₂-terminal amino acid sequences of the two S. minutum PRK subunits, that imply that they are the products of separate genes or products of two different mRNAs spliced from a single gene.     

Germacranolides from Piptolepis Ericoides and Vanillosmopsis species

The aerial parts of Piptolepis ericoides afforded in addition to known compounds two new germacranolides, a zexbrevanolide and piptolepolide, tentatively characterized as a germacranolide with a trans-disubstituted double bond. From the aerial parts of two Vanillosmopis species in addition to goyazensolide, a new isomer with an exocyclic double bond was isolated.     

Pattern of occurrence of supraneural coelomopores and intertentacular organs in Gymnolaemata (Bryozoa) and its evolutionary implications

The evolution of bryozoan female gonopores (the supraneural coelomopore (SNP) and the intertentacular organ (ITO)) is considered in the light of two alternative hypotheses. In the first hypothesis it is proposed that the ITO originated from the shortening and fusion of two tentacles possessing terminal pore(s), with further transformation into a simple pore. In the alternative hypothesis it is suggested that the ITO evolved from a coelomopore with a contribution from the basal parts of two disto-medial tentacles in an ancestor. Favouring the second hypothesis, in this paper we present a hypothetical scenario, according to which the earliest gymnolaemate bryozoans with uniserial growth and a broadcasting reproductive pattern possessed the supraneural coelomopore (SNP). This could serve both as a female gonopore and as a conduit for sperm entry. Evolution of large colonies of closely packed zooids led to development of the tube-like intertentacular organ (ITO) that is formed by epithelial proliferation of the basal parts of two dorso-medial tentacles. This prevented egg swallowing in the situation when water exchange was hampered within the large colony. The ITO independently evolved in both ctenostome and cheilostome gymnolaemates when multiserial colonies appeared. Evolution of brooding in species with colonies of closely packed zooids led to reduction of the ITO, except for the cheilostomes Tendra and Thalamoporella that acquired brooding independently. A rudimentary ITO also “survived” in two ctenostomes with the “mixed” type of brooding. An alternative, analogous organ—the ovipositor—has evolved in the cheilostome taxon Schizoporella.     

Comparative floral structure and systematics in Apodanthaceae (Rafflesiales)

Comparative studies on floral morphology, anatomy, and histology were performed to identify shared features of the genera of Apodanthaceae (Rafflesiales): Apodanthes, Pilostyles, and Berlinianche. Berlinianche was studied for the first time in detail and its affinity to Apodanthaceae was confirmed. It has a previously undescribed hair cushion on the inner perianth organs and inaperturate pollen. Shared features of members of Apodanthaceae are: unisexual flowers; three (or four) alternating di-/tetra- or tri-/hexamerous whorls of scales of which the inner one or two correspond to a perianth; a synandrium with pollen sacs typically arranged in two rings; opening by a dehiscence line between the two rings of pollen sacs; large vesicular hairs above the synandrium; a gynoecium with four united carpels; inferior and unilocular ovaries with four parietal placentae, ovules tenuinucellate, anatropous with two well developed integuments, oriented in various directions; a nectary disk. Apodanthaceae share some special structural features with Malvales.     

Conflict and competition between model-based and model-free control

A large literature has accumulated suggesting that human and animal decision making is driven by at least two systems, and that important functions of these systems can be captured by reinforcement learning algorithms. The “model-free” system caches and uses stimulus–value or stimulus–response associations, and the “model-based” system implements more flexible planning using a model of the world. However, it is not clear how the two systems interact during deliberation and how a single decision emerges from this process, especially when they disagree. Most previous work has assumed that while the systems operate in parallel, they do so independently, and they combine linearly to influence decisions. Using an integrated reinforcement learning/drift-diffusion model, we tested the hypothesis that the two systems interact in a non-linear fashion similar to other situations with cognitive conflict. We differentiated two forms of conflict: action conflict, a binary state representing whether the systems disagreed on the best action, and value conflict, a continuous measure of the extent to which the two systems disagreed on the difference in value between the available options. We found that decisions with greater value conflict were characterized by reduced model-based control and increased caution both with and without action conflict. Action conflict itself (the binary state) acted in the opposite direction, although its effects were less prominent. We also found that between-system conflict was highly correlated with within-system conflict, and although it is less clear a priori why the latter might influence the strength of each system above its standard linear contribution, we could not rule it out. Our work highlights the importance of non-linear conflict effects, and provides new constraints for more detailed process models of decision making. It also presents new avenues to explore with relation to disorders of compulsivity, where an imbalance between systems has been implicated.     

Identification and mode of action of quantitative trait loci affecting seedling height and leaf area in Eucalyptus nitens

 Regions of the genome influencing height and leaf area in seedlings of a three-generation outbred pedigree of Eucalyptus nitens have been identified. Three QTLs affecting height and two QTLs affecting leaf area were located using single-factor analysis of variance. The three QTLs affecting height each explained between 10.3 and 14.7% of the phenotypic variance, while the two QTLs for leaf area each explained between 9.8 and 11.6% of the phenotypic variation. Analysis of fully informative marker loci linked to the QTLs enabled the mode of action of the QTLs to be investigated. For three loci the QTL effect segregated from only one parent, while for two loci the QTL showed multiple alleles and the effect segregated from both parents in the pedigree. The two QTLs affecting leaf area were located in the same regions as two of the QTLs affecting height. Analysis of these regions with fully informative markers showed that both QTLs were linked to the same markers, but one had a similar size of effects and a similar mode of action for both height and leaf area, whilst the other showed a different mode of action for the two traits. These regions may contain two closely linked genes or may involve a single gene with a pleiotrophic effect on both height and leaf area. The QTL with the greatest effect showed multiple alleles and an intra-locus interaction that reduced the size of the effect. Assessment for two of the QTLs in a second related family did not show an effect associated with the marker loci; however, this was consistent with the mode of action of these QTLs and the pattern of inheritance in the second family. Received: 1 August 1996 / Accepted: 25 October 1996     

Allozyme variation within and divergence between Lemna gibba and L. disperma: Systematic and biogeographic implications

Enzyme electrophoresis was employed to assess genetic diversity within and divergence between Lemna disperma and Lemna gibba, sister species that have often been considered conspecific because of the few technical morphological characters distinguishing them. L. gibba is distributed widely except in Australia and New Zealand, where it is replaced by L. disperma. Allozyme data were employed to examine: (1) whether species recognition is supported by genetic divergence between accessions assigned to the two taxa, (2) whether the level of diversity in the two species supports the hypothesis that L. gibba–L. disperma are related as a progenitor–derivative species pair, and (3) whether estimates of divergence times obtained from allozymes are in general agreement with those from plastid sequences. Accessions of the two species are highly divergent at allozyme loci, with a genetic identity of 0.404, and the putative derivative species (L. disperma) has only one-third the diversity of its proposed ancestor, L. gibba. Therefore, allozyme data support the continued recognition of the two species and are concordant with the hypothesis that the species are related as progenitor and derivative. The reduced morphology of L. disperma and the allozyme data indicate that this species originated via dispersal of L. gibba or of a common ancestor of the two species. Estimated divergence times from allozymes and plastid sequences vary widely, but assuming that actual divergence was within the broad range of estimates, long distance dispersal is required to explain the present distribution of the two species.     

Reciprocal intraguild predation and predator coexistence

Intraguild predation is a mix of competition and predation and occurs when one species feeds on another species that uses similar resources. Theory predicts that intraguild predation hampers coexistence of species involved, but it is common in nature. It has been suggested that increasing habitat complexity and the presence of alternative food may promote coexistence. Reciprocal intraguild predation limits possibilities for coexistence even further. Habitat complexity and the presence of alternative food are believed to promote coexistence. We investigated this using two species of predatory mites, Iphiseiodes zuluagai and Euseius concordis, by assessing co‐occurrence in the field and on arenas differing in spatial structure in the laboratory. The predators co‐occured on the same plants in the field. In the laboratory, adults of the two mites fed on juveniles of the other species, both in the presence and the absence of a shared food source, showing that the two species are involved in reciprocal intraguild predation. Adults of I. zuluagai also attacked adults of E. concordis. This suggests limited possibilities for coexistence of the two species. Indeed, E. concordis invariably went extinct extremely rapidly on arenas without spatial structure with populations consisting of all stages of the two predators and with a shared resource. Coexistence was prolonged on host plant leaves with extra food sources, but E. concordis still went extinct. On small, intact plants, coexistence of the two species was much longer, and ended with the other species, I. zuluagai, often going extinct. These results suggest that spatial structure and the presence of alternative food increase the coexistence period of intraguild predators.     

Circadian organization inAplysia: internal desynchronization and amplitude of locomotor rhythm

Summary We have tested the hypothesis that the circadian oscillators in the eyes ofAplysia are coequal driver oscillators for the circadian locomotor rhythm. Three predictions based on this hypothesis were tested. Prediction 1: at a time when the phase difference between the eye rhythms is small, the amplitude of the locomotor rhythm in two eyed animals will be as great or greater than the amplitude in one eyed animals. Prediction 2: the amplitude of the locomotor rhythm of two eyed animals will decline under conditions in which the two eye rhythms become out of phase with each other. Prediction 3: the form of the locomotor rhythm will broaden or become biphasic in two eyed animals when the two eye rhythms become out of phase with each other.None of the predictions was confirmed. One eyedAplysia had higher amplitude locomotor rhythms than two eyedAplysia, even under conditions in which the two eye rhythms were probably not far out of phase with each other. There was no tendency for the amplitude of the locomotor rhythm of two eyed animals to decline under circumstances in which the phase difference between the two eye rhythms changes from less than 4 h to as much as 11.5 h. There was no tendency in two eyed animals for the locomotor rhythm to broaden or become biphasic as the eye rhythms became more out of phase with each other.The results led us to reject the hypothesis that the eyes are co-equal drivers for the locomotor rhythm. The ocular influence on locomotion is more likely to be mediated via mechanisms in the central nervous system that do not faithfully conserve the phase of the eye rhythms. One possibility is that the driver is a third circadian oscillator that interacts with the two eye oscillators.Abbreviations CAP compound action potentials - CC constant conditions - CT circadian time - DO driver oscillator - EO eye oscillator - RSD relative standard deviations (see Methods)     

Biosystematics and diversity amongst novel carboxydotrophic actinomycetes

Fifty-four carboxydotrophic actinomycetes isolated from soils and composts were compared through 119 unit characters with representative mesophilic and thermophilic streptomycetes. The data were examined using the Jaccard, pattern and simple matching coefficients and clustering achieved using the unweighted pair group method with arithmetic averages algorithm. Acceptable cophenetic correlation and test error values allowed confidence to be placed in the resultant numerical taxonomies. The carboxydotrophic actinomycetes, which were distinct from cluster-groups corresponding to the mesophilic and thermophilic streptomycetes, formed two major cluster-groups the members of which were examined for the presence of diagnostic chemical markers. All but two of the carboxydotrophic actinomycetes had a profile of chemical properties consistent with their assignment to the genusStreptomyces. Quantitative fatty acid data were examined using the SIMCA package and the two statistically significant groups obtained corresponded with the cluster-groups circumscribed in the numerical phenetic analysis. Members of the two groups were also distinguished on the basis of their phospholipid composition. The two strains that containedmeso- as opposed to LL-diaminopimelic acid in their peptidoglycan also showed a distinct chemotaxonomic profile. It was concluded that the carboxydotrophic actinomycetes form a novel and taxonomically diverse group.     

Interspecific complementary and competitive interactions between intercropped maize and faba bean

Interspecific complementary and competitive interactions between maize (Zea mays L. cv. Zhongdan No. 2) and faba bean (Vicia faba L. cv. Linxia Dacaidou) in maize/faba bean intercropping systems were assessed in two field experiments in Gansu province, northwestern China, plus a microplot experiment in one treatment of one of the field experiments in which root system partitions were used to determine interspecific root interactions. Intercropping effects were detected, with land equivalent ratio values of 1.21–1.23 based on total (grain+straw) yield and 1.13–1.34 based on grain yield. When two rows of maize were intercropped with two rows of faba bean, both total yield and grain yield of both crop species were significantly higher than those of sole maize and faba bean on an equivalent area basis. When two rows of pea (Pisum sativum L. cv. Beijing No. 5) were intercropped with two rows of faba bean, neither total yield nor grain yield of faba bean was higher than of sole faba bean on an equivalent area basis. Interspecific competition between maize and faba bean was relatively weak, with mean relative crowding coefficients of 0.99–1.02 for maize and 1.55–1.59 for faba bean. The microplot experiment in which partitions were placed between root systems showed a significant positive yield effect on maize when the root systems intermingled freely (no partition) or partly (400 mesh nylon net partition) compared with no interspecific root interaction (plastic sheet partition). This revised version was published online in June 2006 with corrections to the Cover Date.     

Floral anatomy and embryology ofTripetaleia paniculata andT. bracteata (Ericaceae)

Floral anatomy and embryology of the genusTripetaleia were studied for the purpose of comparison with related genera. InT. paniculata the upper petal is supplied by two closely located bundles derived from independent gaps, and each of the two lower petals is supplied by a single bundle which forks promptly into three parts. InT. bracteata the vascular system of the upper petal is identical with that of the former, but each of the two lower petals is supplied by two bundles derived from a single gap. This structure suggests that each petal of both species may have been derived from fusion of two petal units. It has been reported that species belonging to the tribe Cladothamneae, includingTripetaleia, lack the chalazal endopserm haustorium. In the present study, however, a well-developed chalazal endosperm haustorium has been found in both species ofTripetalei. In the initial stages of embryo development of both species, the first two divisions give rise to a linear row of four cells. InT. paniculata the uppermost cell of these four divides transversely to form two superposed cells, then two longitudinal divisions follow in each cell to form the octant. This pattern of the embryo development has not been found previously in the Ericaceace.     

Isolation and Ultrastructure of the Flagella of Methanococcus thermolithotrophicus and Methanospirillum hungatei

The flagella of the archaebacteria Methanococcus thermolithotrophicus and Methanospirillum hungatei enter the cells in regions with ultrastructure resembling that of the polar organelles found in a variety of eubacteria. Flagella of both organisms consist of a filament, a hook, and a basal body with two rings similar to those of gram-positive eubacteria. The integrity of the flagella of M. thermolithotrophicus is lost in the absence of high salt concentrations, and those of both organisms are unstable at high pH. The flagellar filaments of M. hungatei are composed of two flagellins of 24 and 26 kilodaltons.     

Historical demographic profiles and genetic variation of the East African Butana and Kenana indigenous dairy zebu cattle

Butana and Kenana breeds from Sudan are part of the East African zebu Bos indicus type of cattle. Unlike other indigenous zebu cattle in Africa, they are unique due to their reputation for high milk production and are regarded as dairy cattle, the only ones of their kind on the African continent. In this study, we sequenced the complete mitochondrial DNA (mtDNA) D‐loop of 70 animals to understand the maternal genetic variation, demographic profiles and history of the two breeds in relation to the history of cattle pastoralism on the African continent. Only taurine mtDNA sequences were identified. We found very high mtDNA diversity but low level of maternal genetic structure within and between the two breeds. Bayesian coalescent‐based analysis revealed different historical and demographic profiles for the two breeds, with an earlier population expansion in the Butana vis a vis the Kenana. The maternal ancestral populations of the two breeds may have diverged prior to their introduction into the African continent, with first the arrival of the ancestral Butana population. We also reveal distinct demographic history between the two breeds with the Butana showing a decline in its effective population size (N_e) in the recent past ~590 years. Our results provide new insights on the early history of cattle pastoralism in Sudan indicative of a large ancient effective population size.     

Identification of Glyoxalase I Sequences in Brassica oleracea and Sporobolus stapfianus: Evidence for Gene Duplication Events

Glyoxalase I (GlxI) is the first of two enzymes involved in the cellular detoxification of methylglyoxal. A recent search of the National Center for Biotechnology Information (NCBI) databases with the protein sequence of Salmonella typhimurium GlxI identified two new hypothetical proteins with unassigned function. These two sequences, from Brassica oleracea and Sporobolus stapfianus, have significant sequence similarity to known GlxI sequences, suggesting that these two open reading frames encode for GlxI in these plants. Interestingly, analysis of these two new sequences indicates that they code for a protein composed of two fused monomers, a situation previously found solely in the yeast GlxI enzymes. Received: 10 May 1997 / Accepted: 15 October 1997     

Chloroplast RNA polymerase from spinach: purification and DNA-binding proteins

Spinach DNA dependent RNA polymerase was purified from isolated chloroplasts by two different procedures. Analysis of the protein composition of the two preparations by SDS-polyacrylamide gel electrophoresis always shows six abundant polypeptides with Mr of 150, 110, 102, 80, 75 and 38 Kd and one less abundant polypeptide of 25 Kd. Some other proteins ranging from 40–70 Kd in Mr are also detected but in a minor and variable amount. The two preparations have an optimum of enzyme activity at 30°C and at 15 mM (NH₄)₂SO₄ when tested with denatured calf thymus DNA. Binding experiments with two different nick translated fragments of spinach chloroplast DNA show that the 80 and 75 Kd polypeptides possess a strong DNA binding capacity.