Taxonomic revisions in the Microstromatales: two new yeast species,two new genera,and validation of <Emphasis Type="Italic">Jaminaea</Emphasis> and two <Emphasis Type="Italic">Sympodiomycopsis</Emphasis> species

Environmental sampling yielded two yeast species belonging to Microstromatales (Exobasidiomycetes, Ustilaginomycotina). The first species was collected from a leaf phylloplane infected by the rust fungus Coleosporium plumeriae, and represents a new species in the genus Jaminaea, for which the name Jaminaea rosea sp. nov. is proposed. The second species was isolated from air on 50% glucose media and is most similar to Microstroma phylloplanum. However, our phylogenetic analyses reveal that species currently placed in Microstroma are not monophyletic, and M. phylloplanum, M. juglandis and M. albiziae are not related to the type species of this genus, M. album. Thus, Pseudomicrostroma gen. nov. is proposed to accommodate the following species: P. glucosiphilum sp. nov., P. phylloplanum comb. nov. and P. juglandis comb. nov. We also propose Parajaminaea gen. nov. to accommodate P. albizii comb. nov. and P. phylloscopi sp. nov. based on phylogenetic analyses that show these are not congeneric with Jaminaea or Microstroma. In addition, we validate the genus Jaminaea, its respective species and two species of Sympodiomycopsis and provide a new combination, Microstroma bacarum comb. nov., for the anamorphic yeast Rhodotorula bacarum. Our results illustrate non-monophyly of Quambalariaceae and Microstromataceae as currently circumscribed. Taxonomy of Microstroma and the Microstromataceae is reviewed and discussed. Finally, analyses of all available small subunit rDNA sequences for Jaminaea species show that J. angkorensis is the only known species that possess a group I intron in this locus, once considered a potential feature indicating the basal placement of this genus in Microstromatales.     

Phylogenetic reconstructions in the genus <Emphasis Type="Italic">Capra</Emphasis> (Bovidae,Artiodactyla) based on the mitochondrial DNA analysis

Mitochondrial genome fragments were examined in all species of the genus Capra (Bovidae, Artiodactyla). Phylogenetic analysis was carried out using 59 cytochrome b gene sequences (392 bp), and 22 sequences of the mtDNA variable fragment (402 bp). In the control region, two unique deletions were revealed. One of the deletions was found only in Capra cylindricornis (17 bp), while another one grouped C. caucasica with C. aegagrus (1 bp). The group of Caucasian wild goats splits into two clades, and furthermore, the sequences of C. caucasica demonstrate remarkable similarity to the sequences of C. aegagrus, while C. cylindricornis seems to have evolved independently for a long period of time. It was demonstrated that C. pyrenaica and C. ibex were extremely close to one another. Capra sibirica formed an outer group relative to the other species, and according to our data, was the most ancient species of the genus. On the contrary, genetic distance separating C. falconeri (the most independent species of the genus related to its morphology) from the other species is small.     

Structural Diversity and State of Knowledge of Flavonoids of the <Emphasis Type="Italic">Scutellaria</Emphasis> L. Genus

The review presents the results of scientometric analysis of data on the level of study and chemical diversity of flavonoids of the Scutellaria L. genus species of the world’s flora. Flavonoid composition in 63 species of skullcap is reported, together with the data on distribution in plants, structure, and sources of 301 flavonoids belonging to the groups of flavones, flavanones, flavanonols, flavonols, chalcones, isoflavones, flavolignans, and bioflavonoids. The greatest number of flavonoids was shown to be isolated from plants of S. indica, S. baicalensis, S. barbata, S. amoena, S. prostrata, S. galericulata, S. discolor, S. ramosissima, and S. supina. Scientometric studies indicate the constantly growing interest in the study of species of the Scutellaria L. genus by scientists of various branches of science, including phytochemists, biologists, and pharmacologists. Information provided in the review can be used to address issues of chemosystematics of plants of the Scutellaria L. genus.     

ITS rDNA sequence comparisons resolve phylogenetic relationships in <Emphasis Type="Italic">Orostachys</Emphasis> subsection <Emphasis Type="Italic">Appendiculatae</Emphasis> (Crassulaceae)

Orostachys (Crassulaceae) is a small genus of succulent plants having a predominantly East Asian distribution. Recent DNA sequence comparisons revealed polyphyletic nature of the genus and found distant relationship between its infrageneric taxa. Here we present the first molecular phylogeny of Orostachys subsection Appendiculatae based on a large number of ITS rDNA sequences representing most currently recognized members of the subsection and utilizing secondary structure information. Ribosomal spacer was a highly informative marker and provided a phylogenetic signal sufficient to resolve relationships at different scales, from affinities between species to a fine geographic structure in broadly sampled species. It was also conservative enough to allow unambiguous alignment and construction of consensus secondary structure models for ITS1 and ITS2. These models displayed a number of molecular synapomorphies defining most lineages established in our analyses. We revealed a major split in the subsection placing three species, O. spinosa, O. japonica and O. chanetii, into a strongly supported clade to the exclusion of O. thyrsiflora. Phenotypically distinct monotypic genus Meterostachys was also resolved as a part of the subsection’s clade and showed affinity to O. thyrsiflora. Our data suggested that morphology-based species concept for O. thyrsiflora requires reassessment.     

Chromosome counts in <Emphasis Type="Italic">Chaetogastra</Emphasis> (Melastomataceae,Melastomateae)

Chaetogastra is the largest genus in Melastomateae, with about 165–190 species. The genus was only recently resurrected, based on species that have been traditionally treated in Tibouchina sects. Diotanthera, Pseudopterolepis, Purpurella and Simplicicaules. This article presents 15 chromosome counts for the genus, a review of the available counts and also a discussion of these counts in a systematic context. Although the sampling in the genus is still poor, the data found in the literature and in our research indicate x=9 as the base chromosome number for the genus. We also found that euploidy may be common in Chaetogastra, with diploid, tetraploid and hexaploid species. Basic chromosome numbers also seem to be a taxonomic character that distinguishes Chaetogastra (x=9) from Brachyotum (x=10).     

A review of the genus <Emphasis Type="Italic">Deporaus</Emphasis> (Coleoptera,Rhynchitidae) from the Russian fauna: 1. Subgenera <Emphasis Type="Italic">Pseudapoderites</Emphasis> and <Emphasis Type="Italic">Japonodeporaus</Emphasis>

The genus Deporaus from the Russian fauna is revised. Four species (D. pacatus, D. azarovae, D. septentrionalis, and D. hartmanni) of the subgenera Pseudapoderites and Japonodeporaus are found. Keys to the subgenera and to the species of the subgenus Pseudapoderites are given. The genus Deporaus, subgenera Pseudapoderites and Japonodeporaus, and four species are redescribed. The distribution of these species in Russia is discussed.     

Taxonomic and phylogenetic placement of <Emphasis Type="Italic">Nodulosphaeria</Emphasis>

Nodulosphaeria is a ubiquitous genus that comprises saprobic, endophytic and pathogenic species associated with a wide variety of substrates and has 64 species epithets listed in Index Fungorum. The classification of species in the genus has been a major challenge due to a lack of understanding of the importance of characters used to distinguish taxa, as well as the lack of reference strains. The present study clarifies the phylogenetic placement of the genus and related species, using fresh collections from Italy. Four Nodulosphaeria species are characterized based on multi-loci analyses of ITS, LSU, SSU, TEF and RPB2 sequence datasets. Phylogenetic analyses indicate that Nodulosphaeria species group within the family Phaeosphaeriaceae as a distinct genus. The sexual morphs of Nodulosphaeria hirta and N. spectabilis are described and illustrated using modern concepts. Two new Nodulosphaeria species are introduced. The phylogenetic relationships and taxonomy of the genus Nodulosphaeria are discussed, but further sampling with fresh collections, reference or ex-type strains and molecular data are needed to obtain a better and natural classification for the genus.     

Contribution to the study of the genus <Emphasis Type="Italic">Lemniscomys</Emphasis> (Rodentia: Muridae). Morphometric and molecular approaches

A total of 204 specimens belonging to eight species of the genus Lemniscomys were examined with standard morphometric measurements. Our results show that the seven Sub-Saharan species seem to follow a latitudinal gradient from the Center to the South of the African continent. The only North African species L. barbarus looks close to L. griselda and L. rosalia. We also applied a molecular analysis through PCR (Polymerase Chain Reaction) method for the amplification of the 16S rRNA gene. For the purpose of constructing a phylogenetic tree with Maximum Likelihood method, we extracted eight sequences from the GenBank library; seven belonging to the genus Lemniscomys and one to the genus Arvicanthis used as outgroup. We managed to identify a region comprised of 458 nucleotides of which 388 were common for all species and 70 were variable. The phylogenetic tree shows us that the sister group L. bellieri and L. macculus, is the most basal, while L. striatus and L. rosalia appears to be close to the sister group L. barbarus and L. zebra. We also noticed a difference between morphometric and molecular results; the latter are more in agreement with pelage patterns subdivision between Lemniscomys species. These differences can be explained by a high rate of phenotypic evolution that can surpass the molecular counterpart as in the case of the genus Gerbillus.     

Gall midges of the supertribe stomatosematidi (Diptera,Cecidomyiidae) in the Palaearctic region,with descriptions of new taxa from the late Eocene Rovno Amber. 2. The genera <Emphasis Type="Italic">Didactylomyia</Emphasis> and <Emphasis Type="Italic">Rovnodidactylomyia</Emphasis> gen. n.

One new genus (Rovnodidactylomyia Fedotova et Perkovsky, gen. n.) and four new species (Didactylomyia dlusskyi sp. n., Rovnodidactylomyia zosimovichi gen. n. et sp. n., R. sidorenkoi sp. n., and R. iconica sp. n.) are described from an amber sample of the late Eocene Period (Rovno District, Ukraine). Two species from a Baltic amber sample of the late Eocene Period, described earlier in the genus Bryocrypta, are attributed to the genus Rovnodidactylomyia (R. girafa (Meunier, 1904) comb. n. and R. capitosa (Meunier, 1904)). The first fossil species of the genus Didactylomyia is described for the first time; two contemporary Palaearctic species are recorded. Keys to the species of the genus Didactylomyia are given.     

Revision of the carabid genus <Emphasis Type="Italic">Meroctenus</Emphasis> Gemminger et Harold,with a new status of <Emphasis Type="Italic">Xenodochus</Emphasis> Andrewes (Coleoptera,Carabidae: Harpalini)

Originally described as a monotypical genus with unclear taxonomic position from Sudan, Meroctenus Gemminger et Harold, 1868 is treated as a polytypical genus of the Selenophori genus group with two subgenera: Meroctenus s. str. and Xenodochus Andrewes, 1941, stat. n. (the latter was previously considered a distinct genus). Within Meroctenus, two species are recognized: M. (Meroctenus) crenulatus Chaudoir, 1843 (type species) and M. (M.) mediocris (Andrewes, 1936), comb, n., transferred to Meroctenus s. str. from Xenodochus. A new subspecies M. (M.) crenulatus orientalis subsp. n. is described from Pakistan. Diagnoses of the genus Meroctenus in new interpretation as well as of its two subgenera are discussed, and a taxonomic review of the subgenus Meroctenus s. str. with a key to the species and subspecies is provided. The following synonymy is proposed: Meroctenus Gemminger et Harold, 1868 = Paregaploa Müller, 1947, syn. n.; Meroctenus crenulatus (Chaudoir, 1843) = Egaploa (Paregaploa) conviva Müller, 1947, syn. n. Lectotypes are designated for Ctenomerus crenulatus Chaudoir, 1843 and Xenodus mediocris Andrewes, 1936.     

<Emphasis Type="Italic">Paulogramma hydarnis</Emphasis> (n. comb.) (Nymphalidae: Biblidinae): Distribution,Systematic Position,and Conservation Status of a Rare and Endangered Butterfly

The nymphalid Paulogramma hydarnis (Godart) (n. comb., previously in the genus Callicore) is an endangered butterfly present in a few montane sites in the Atlantic Forest in the Southeastern Brazil. The precise systematic position of P. hydarnis was previously unknown. Based on molecular data, we find that it is sister to Paulogramma pygas (Godart) (n. comb., also previously in Callicore), a common and widespread species in the Neotropics. In addition, we find that Callicore is not monophyletic and that “Callicore” hydarnis (along with other species) is more related to the genus Paulogramma, and should thus be placed in that genus. The genus Paulogramma is now composed by the following species: Paulogramma pyracmon (Godart), Paulogramma eunomia (Hewitson) n. comb., Paulogramma hydarnis (Godart) n. comb., Paulogramma hystaspes (Fabricius) n. comb., Paulogramma pygas (Godart) n. comb., and Paulogramma tolima (Hewitson, 1852) n. comb. Museum specimens and field data report P. hydarnis in four sites in Southeastern Brazil. Recently, P. hydarnis was recorded for the first time at Parque Nacional do Caparaó, states of Espírito Santo and Minas Gerais, expanding its distribution about 200 km northward of the previously known limit. Although regularly recorded in some sites, most records are historic, before the 1960s, and the current conservation situation of this species is delicate, deserving attention.     

Revision of <Emphasis Type="Italic">Protohydnum</Emphasis> (Auriculariales,Basidiomycota)

Three species currently addressed to Protohydnum (Auriculariales) are studied with morphological and DNA methods. The genus Protohydnum is retained for the type species only, P. cartilagineum, recently re-collected in Brazil. The European species, P. piceicola, is not congeneric with P. cartilagineum and, therefore, placed in its own genus, Hyalodon, gen. nov. Another Hyalodon species, H. antui, is described from East Asia. The third member of Protohydnum sensu lato, P. sclerodontium from South-East Asia, is transferred to Elmerina.     

Taxonomic genetics of methylotrophic yeast genus <Emphasis Type="Italic">Komagataella</Emphasis>: New biological species <Emphasis Type="Italic">K. kurtzmanii</Emphasis>

Genetic hybridization analysis revealed that industrially important species Komagataella kurtzmanii has reproductive postzygotic isolation from K. pastoris, K. phaffii, K. populi, K. pseudopastoris, and K. ulmi. Therefore, it represents a new biological species of the genus Komagataella. The genetic data are in perfect agreement with the molecular taxonomy of the genus Komagataella.     

End of an enigma: <Emphasis Type="Italic">Aenigmopteris</Emphasis> belongs in <Emphasis Type="Italic">Tectaria</Emphasis> (Tectariaceae: Polypodiopsida)

The phylogenetic affinities of the fern genus Aenigmopteris have been the subject of considerable disagreement, but until now, no molecular data were available from the genus. Based on the analysis of three chloroplast DNA regions (rbcL, rps16-matK, and trnL-F) we demonstrate that Aenigmopteris dubia (the type species of the genus) and A. elegans are closely related and deeply imbedded in Tectaria. The other three species of genus are morphologically very similar; we therefore transfer all five known species into Tectaria. Detailed morphological comparison further shows that previously proposed diagnostic characters of Aenigmopteris fall within the range of variation of a broadly circumscribed Tectaria.     

Comparative study of antioxidant properties of extracts of various <Emphasis Type="Italic">Aloe</Emphasis> species

Nowadays, a search for sources of the most biologically active antioxidant compounds among various herbs is an urgent problem. In this connection, several succulent plants from the Aloe genus are of special interest, because their preparations are widely used in domestic medicine. In this study, we measured the antioxidant activity (AOA) of an alcoholic extract of leaves of 15 Aloe species by amperometric and chemiluminescent methods and performed a comparative analysis of the results. We observed a considerable difference between the AOA values for the several Aloe species and explained this fact. The most active antioxidant among the samples proved to be the A. pillansii representative of the Aloe genus. Both methods demonstrated that the extracts from leaves of this Aloe species exhibited the high AOA. The A. broomii and A. spinosissima also had rather high AOA along with the A. pillansii and A. arborescens. The newly discovered Aloe species could be as promising a source of biologically active compounds as the traditionally used A. arborescens and A. vera.     

Contribution to the phylogeny and a new species of <Emphasis Type="Italic">Coccodiella</Emphasis> (Phyllachorales)

Coccodiella is a genus of plant-parasitic species in the family Phyllachoraceae (Phyllachorales, Ascomycota), i.e., tropical tar spot fungi. Members of the genus Coccodiella are tropical in distribution and are host-specific, growing on plant species belonging to nine host plant families. Most of the known species occur on various genera and species of the Melastomataceae in tropical America. In this study, we describe the new species C. calatheae from Panama, growing on Calathea crotalifera (Marantaceae). We obtained ITS, nrLSU, and nrSSU sequence data from this new species and from other freshly collected specimens of five species of Coccodiella on members of Melastomataceae from Ecuador and Panama. Phylogenetic analyses allowed us to confirm the placement of Coccodiella within Phyllachoraceae, as well as the monophyly of the genus. The phylogeny of representative species within the family Phyllachoraceae, including Coccodiella spp., graminicolous species of Phyllachora and taxa with erumpent to superficial stroma from several host families, suggests that the genus Phyllachora might be polyphyletic. Furthermore, tar spot fungi with superficial or erumpent perithecia seem to be restricted to the family Phyllachoraceae, independently of the host plant. We also discuss the biodiversity and host-plant patterns of species of Coccodiella worldwide.