Ecological and evolutionary components of body size: geographic variation of venomous snakes at the global scale

Biogeographical patterns of animal body size and the environmental and evolutionary mechanisms that may be driving them have been broadly investigated in macroecology, although just barely in ectotherms. We separately studied two snake clades, Viperidae and Elapidae, and used phylogenetic eigenvector regression and ordinary least squares multiple regression methods to perform a global grid-based analysis of the extent at which the patterns of body size (measured for each species as its log₁₀-transformed maximum body length) of these groups are phylogenetically structured or driven by current environment trends. Phylogenetic relatedness explained 20% of the across-species size variation in Viperidae, and 59% of that of Elapidae, which is a more recent clade. Conversely, when we analysed spatial trends in mean body size values (calculated for each grid-cell as the average size of its extant species), an environmental model including temperature, precipitation, primary productivity (as indicated by the global vegetation index) and topography (range in elevation) explained 37.6% of the variation of Viperidae, but only 4.5% of that of Elapidae. These contrasted responses of body size patterns to current environment gradients are discussed, taking into consideration the dissimilar evolutionary histories of these closely-related groups. Additionally, the results obtained emphasize the importance of the need to start adopting deconstructive approaches in macroecology.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 94–109.     

Integrating spatially explicit habitat projections into extinction risk assessments: a reassessment of Amazonian avifauna incorporating projected deforestation

Aim We aimed to complete the first systematic assessment of extinction risk based on projected population declines derived from spatially explicit habitat projections for any taxonomic group at a regional scale, to use the outputs to ascertain the efficacy of an existing protected area network in covering species of conservation concern, and identify gaps therein. Location This study focused on Amazonia; an area of exceptional biodiversity, currently experiencing the highest absolute rate of forest loss globally but where the proportion of species assessed as ‘threatened’ on the International Union for the Conservation of Nature (IUCN) Red List in the region is below global averages. Methods For all forest‐dependent Amazonian bird species (814), we revised extinction risk estimates by combining data from a spatially explicit deforestation model with generation length estimates. By overlaying distribution maps for these revised threatened species, we identified crisis areas (areas of projected deforestation supporting the highest numbers of threatened species), refugia (areas projected to retain forest supporting the highest numbers of threatened species) and areas of high irreplaceability: short‐ and long‐term priorities for new protected areas (PAs). Results The number of species qualifying as threatened rose substantially from 24 (3%) to 64–92 (8–11%). Areas of particular concern are the crisis and highly irreplaceable areas within the ‘arc of deforestation’ in the southern Brazilian Amazon states of Rondônia, Mato Grosso and Pará. Main conclusions Through a novel application of the IUCN Red List criteria, we present a spatially accurate rendering of the extinction risks of Amazonian birds. Important areas in the Amazon are not secure. We identify priorities for expansion of the PAs network and key locations where protection should be enforced. We recommend a collaborative approach employing our methods to repeat this process for other taxonomic groups.     

Does conservation planning matter in a dynamic and uncertain world?

Loss of biodiversity is one of the world's overriding environmental challenges. Reducing those losses by creating reserve networks is a cornerstone of global conservation and resource management. Historically, assembly of reserve networks has been ad hoc, but recently the focus has shifted to identifying optimal reserve networks. We show that while comprehensive reserve network design is best when the entire network can be implemented immediately, when conservation investments must be staged over years, such solutions actually may be sub‐optimal in the context of biodiversity loss and uncertainty. Simple decision rules, such as protecting the available site with the highest irreplaceability or with the highest species richness, may be more effective when implementation occurs over many years.     

Geographical ecology and conservation of Eugenia L. (Myrtaceae) in the Brazilian Cerrado: Past,present and future

Human actions have caused the fragmentation of natural vegetation, habitat loss and climate change. The Cerrado, considered one of the global hotspots of diversity, has suffered great habitat loss due to these factors, which has been aggravated by the agricultural expansion that took place during the last 60 years. In this context, we chose species of the genus Eugenia L. (Myrtaceae) occurring in the Brazilian Cerrado to describe richness patterns and range loss, and determine conservation priorities for the Cerrado. Ecological niche models (ENMs) were applied to calculate the geographical range of each species in the past (Last Glacial Maximum – LGM, 21 000 years ago), present (PIP, representing current climatic conditions – 1760 years ago) and future (near future – NF, 2080–2100). These results were combined to calculate the richness of the group and also to estimate the range loss of these species in the future. Moreover, we evaluated the irreplaceability of areas for species conservation, aiming to maximize the biotic stability of Eugenia species. Our results showed that the highest species richness in the past was found in the southwestern region of the Cerrado and, currently, the richest regions are found in the central and southeastern areas. However, in the future, we predict a shift of the greatest values of richness towards the southeastern region, an area currently occupied by the Atlantic forest. Although areas with high conservation priorities were found scattered across the biome, this shift is worrisome due to the high fragmentation rate and intensive human occupation thoughout the Atlantic region. Thus, conservation efforts should focus on areas found within these limits.     

Global diversity of snakes (Serpentes; Reptilia) in freshwater

A list of the snake species inhabiting freshwaters is provided. It includes 153 species, which represents about 5% of all known snakes. These freshwater snakes belong to 44 genera distributed among the families Acrochordidae, Boidae, Colubridae, Elapidae, Homalopsidae and Viperidae. The highest diversities in freshwater snakes are found in the Oriental (64 species) and Neotropical (39 species) Regions. Conservation actions are needed for several overcollected species with a limited distribution. Guest editors: E. V. Balian, C. Lévêque, H. Segers, & K. Martens Freshwater Animal Diversity Assessment     

蛇毒蛋白原核表达包涵体复性研究进展

外源基因在大肠杆菌中表达后常形成不溶性的无活性包涵体。包涵体的形成已经成为研究和应用活性蛋白质生产的主要障碍。然而,在合适的条件下,包涵体经过溶解、纯化、复性过程后可在体外重新折叠成有活性的蛋白质。迄今,已对蝰科、眼镜蛇科11种毒蛇的18个基因(包括金属蛋白酶、PLA₂、β-银环蛇毒素、心脏素素、丝氨酸蛋白酶、神经生长因子、C-型凝集素等)成功进行了原核表达,采用稀释复性、透析复性和层析复性三种方法成功进行了包涵体复性。着重就蛇毒蛋白原核表达后包涵体复性所用的方法予以综述。     

Electrophoretic analysis of snake venoms

Electrophoretic analyses were conducted on snake venoms from 21 species representing Elapidae, Crotalidae and Viperidae. Denatured and native venoms were analyzed by polyacrylamide gel electrophoretic (PAGE) methods with sodium dodecyl sulfate (SDS) and without SDS. Both SDS-PAGE and PAGE profiles of venoms from different snake species indicate that some proteins and polypeptide components of these venoms have common electrophoretic characteristics suggesting a genetic relationship. Conversely, the electropherograms also showed the characteristic protein and polypeptide profiles that could differentiate one snake species from another. Therefore, both SDS-PAGE and PAGE profiles suggest that proteins and polypeptides with similar characteristics abound among subspecies or related species, although each venom has a unique profile that differentiates one species from the other.     

Protecting biodiversity when money matters: maximizing return on investment

Background

Conventional wisdom identifies biodiversity hotspots as priorities for conservation investment because they capture dense concentrations of species. However, density of species does not necessarily imply conservation ‘efficiency’. Here we explicitly consider conservation efficiency in terms of species protected per dollar invested.

Methodology/Principal Findings

We apply a dynamic return on investment approach to a global biome and compare it with three alternate priority setting approaches and a random allocation of funding. After twenty years of acquiring habitat, the return on investment approach protects between 32% and 69% more species compared to the other priority setting approaches. To correct for potential inefficiencies of protecting the same species multiple times we account for the complementarity of species, protecting up to three times more distinct vertebrate species than alternate approaches.

Conclusions/Significance

Incorporating costs in a return on investment framework expands priorities to include areas not traditionally highlighted as priorities based on conventional irreplaceability and vulnerability approaches.     

The key elements of a comprehensive global mammal conservation strategy

A global strategy is necessary to achieve the level of coordination, synergy and therefore optimization of resources to achieve the broad goal of conserving mammals worldwide. Key elements for the development of such a strategy include: an institutional subject that owns the strategy; broad conservation goals, quantitative targets derived from them and appropriate indicators; data on the distribution of species, their threats, the cost-effectiveness of conservation actions; and a set of methods for the identification of conservation priorities. Previous global mammal research investigated phylogeny, extinction risk, and the species and areas that should be regarded as global conservation priorities. This theme issue presents new key elements: an updated Red List Index, a new list of evolutionarily distinct and globally endangered species, new high-resolution mammal distribution models, a global connectivity analysis and scenarios of future mammal distribution based on climate and land-cover change. Area prioritization schemes account for mammalian phylogeny, governance and cost-benefit of measures to abate habitat loss. Three discussion papers lay the foundations for the development of a global unifying mammal conservation strategy, which should not be further deterred by the knowledge gaps still existing.     

Survey of the reptilian fauna of the Kingdom of Saudi Arabia. VI. The snake fauna of Turaif region

A collection of snakes in Turaif region, Kingdom of Saudi Arabia, an area that has been poorly documented for reptiles, consists of 28 specimens representing 11 species belonging to 4 families (Colubridae, Elapidae, Viperidae and Atractaspididae). This study presents the first comprehensive inventory of the herpetofauna of the Turaif province of Saudi Arabia. Co-ordinates: Latitude, longitude and altitude, of the collected specimens were mapped using GPS. Three of the snake species Lytorhynchus diadema, Pseudocerastes fieldi and Walterinnesia morgani reported by the authors in the present survey proved to be new records for Turaif region of Saudi Arabia.     

广西百色蛇类资源调查初报

2000～2007年对广西百色的蛇类资源进行了调查.百色地区有蛇类5科57种,其中游蛇科41种,占71.9%,蝰科8种,占14.0%,眼镜蛇科6种,占10.5%,蟒科和盲蛇科各1种,各占1.8%.以东洋界种类占绝对优势(93.0%),缺古北界种类,只有4种广布古北东洋界(7.0%).根据蛇类资源现状提出了保护对策.     

尤溪县生物多样性保护优先地区分析

选择人类活动频繁的常绿阔叶林林区具有代表性的福建尤溪县进行了生物多样性保护的优先性分析。在多次实地调查基础上,利用野生动物野外实地样带调查数据,已有的珍稀淑危鸟,兽和植物物种的分布资料,同时结合利用地理信息系统软件ARC/INFO数字化1：10万林相图和1：5万地形图,建立了基于GIS的尤溪县生物多样性信息系统,然后根据物种多样性,珍稀濒危物种保护和生态系统保护目标,确立了保护优先性分析原则,即珍稀濒危物种尽可能包含在保护区和保护小区内,同时在优先保护区尽可能包含更多的其它物种,用最新的森林分布图及调查物种分布与生境关系,生态系统在保护物种与生态系统功能等方面的作用等,提出了生态系统的保护优先地区,将提出保护优先地区与已建保护小区和保护点分布图进行叠加分析表明,保护小区和保护点的方法是保护珍稀濒危物种的有效方法,但是需要考虑保护小区之间的联系,在对大型哺乳动物保护时需要建立面积较大的自然保护区,最后,提出了建立自然保护区规划。     

Ecological niche modelling as a technique for assessing threats and setting conservation priorities for Asian slow lorises (Primates: Nycticebus)

Aim Data on geographical ranges are essential when defining the conservation status of a species, and in evaluating levels of human disturbance. Where locality data are deficient, presence‐only ecological niche modelling (ENM) can provide insights into a species’ potential distribution, and can aid in conservation planning. Presence‐only ENM is especially important for rare, cryptic and nocturnal species, where absence is difficult to define. Here we applied ENM to carry out an anthropogenic risk assessment and set conservation priorities for three threatened species of Asian slow loris (Primates: Nycticebus). Location Borneo, Java and Sumatra, Southeast Asia. Methods Distribution models were built using maximum entropy (MaxEnt) ENM. We input 20 environmental variables comprising temperature, precipitation and altitude, along with species locality data. We clipped predicted distributions to forest cover and altitudinal data to generate remnant distributions. These were then applied to protected area (PA) and human land‐use data, using specific criteria to define low‐, medium‐ or high‐risk areas. These data were analysed to pinpoint priority study sites, suitable reintroduction zones and protected area extensions. Results A jackknife validation method indicated highly significant models for all three species with small sample sizes (n = 10 to 23 occurrences). The distribution models represented high habitat suitability within each species’ geographical range. High‐risk areas were most prevalent for the Javan slow loris (Nycticebus javanicus) on Java, with the highest proportion of low‐risk areas for the Bornean slow loris (N. menagensis) on Borneo. Eighteen PA extensions and 23 priority survey sites were identified across the study region. Main conclusions Discriminating areas of high habitat suitability lays the foundations for planning field studies and conservation initiatives. This study highlights potential reintroduction zones that will minimize anthropogenic threats to animals that are released. These data reiterate the conclusion of previous research, showing MaxEnt is a viable technique for modelling species distributions with small sample sizes.     

Ensemble models predict Important Bird Areas in southern Africa will become less effective for conserving endemic birds under climate change

Aim  To examine the impacts of climate change on endemic birds, which are of global significance for conservation, on a continent with few such assessments. We specifically assess projected range changes in relation to the Important Bird Areas (IBAs) network and assess the possible consequences for conservation.
Location  South Africa, Lesotho and Swaziland.
Methods  The newly emerging ensemble modelling approach is used with 50 species, four climate change models for the period 2070–2100 and eight bioclimatic niche models in the statistical package biomod . Model evaluation is done using the receiver operating characteristic and the recently introduced true skill statistic. Future projections are made considering two extreme assumptions: species have full dispersal ability and species have no dispersal ability. A consensus forecast is identified using principal components analysis. This forecast is interpreted in terms of the IBA network. An irreplaceability analysis is used to highlight priority IBAs for conservation attention in terms of climate change.
Results  The majority of species (62%) are predicted to lose climatically suitable space. Five species lose at least 85% of their climatically suitable space. Many IBAs lose species (41%; 47 IBAs) and show high rates of species turnover of more than 50% (77%; 95 IBAs). Highly irreplaceable regions for endemic species become highly localized under climate change, meaning that the endemic species analysed here experience similar range contractions to maintain climate niches.
Main conclusions  The South African IBAs network is likely to become less effective for conserving endemic birds under climate change. The irreplaceability analysis identified key refugia for endemic species under climate change, but many of these areas are not currently IBAs. In addition, many of these high-priority areas that are IBAs fall outside the current formal protected areas network.     

When the method for mapping species matters: defining priority areas for conservation of African freshwater turtles

Aim Defining priority areas for conservation is essential to minimize biodiversity loss, but the adoption of different methods for describing species distributions influences the outcomes. In order to provide a robust basis for the conservation of freshwater turtles in Africa, we compared the effect that different species‐mapping approaches had on derived patterns of species richness, species vulnerability and protected‐area representativeness. Location Africa. Methods We adopted three different approaches with increasing complexity for generating species distribution maps. The first approach was based on the geographic intersection of species records and grid squares; the second on the union of local convex polygons; and the third on inductive distribution modelling techniques. We used distribution maps, generated using these three approaches, to determine conservation priorities based on geographic patterns of species richness and vulnerability, as well as for conducting gap and irreplaceability analyses. Results We obtained markedly different distribution maps using the three methods, which in turn caused differences in conservation priorities. The grid‐square approach underestimated range sizes and species richness, while the polygon approach overestimated these attributes. The distribution modelling approach provided the most realistic outcome in terms of diversity patterns, by minimizing both commission and omission errors. An integrated map of conservation priority – derived by combining individual measures of priority based on the distribution modelling approach – identified the Gulf of Guinea coast and the Albertine Rift as major priority areas. Main conclusions Each species‐mapping approach has both advantages and disadvantages. The choice of the most appropriate approach in any given situation depends on the availability of locality records and on the relative importance of mitigating omission and commission errors. Our findings suggest that in most circumstances, the use of distribution modelling has many advantages relative to the other approaches. The priority areas identified in this study should be considered for targeting efforts to conserve Africa freshwater turtles in the coming years.     

Integrating Economic Costs and Biological Traits into Global Conservation Priorities for Carnivores

Background

Prioritization schemes usually highlight species-rich areas, where many species are at imminent risk of extinction. To be ecologically relevant these schemes should also include species biological traits into area-setting methods. Furthermore, in a world of limited funds for conservation, conservation action is constrained by land acquisition costs. Hence, including economic costs into conservation priorities can substantially improve their conservation cost-effectiveness.

Methodology/Principal Findings

We examined four global conservation scenarios for carnivores based on the joint mapping of economic costs and species biological traits. These scenarios identify the most cost-effective priority sets of ecoregions, indicating best investment opportunities for safeguarding every carnivore species, and also establish priority sets that can maximize species representation in areas harboring highly vulnerable species. We compared these results with a scenario that minimizes the total number of ecoregions required for conserving all species, irrespective of other factors. We found that cost-effective conservation investments should focus on 41 ecoregions highlighted in the scenario that consider simultaneously both ecoregion vulnerability and economic costs of land acquisition. Ecoregions included in priority sets under these criteria should yield best returns of investments since they harbor species with high extinction risk and have lower mean land cost.

Conclusions/Significance

Our study highlights ecoregions of particular importance for the conservation of the world''s carnivores defining global conservation priorities in analyses that encompass socioeconomic and life-history factors. We consider the identification of a comprehensive priority-set of areas as a first step towards an in-situ biodiversity maintenance strategy.     

Reconciling global mammal prioritization schemes into a strategy

The huge conservation interest that mammals attract and the large datasets that have been collected on them have propelled a diversity of global mammal prioritization schemes, but no comprehensive global mammal conservation strategy. We highlight some of the potential discrepancies between the schemes presented in this theme issue, including: conservation of species or areas, reactive and proactive conservation approaches, conservation knowledge and action, levels of aggregation of indicators of trend and scale issues. We propose that recently collected global mammal data and many of the mammal prioritization schemes now available could be incorporated into a comprehensive global strategy for the conservation of mammals. The task of developing such a strategy should be coordinated by a super-partes, authoritative institution (e.g. the International Union for Conservation of Nature, IUCN). The strategy would facilitate funding agencies, conservation organizations and national institutions to rapidly identify a number of short-term and long-term global conservation priorities, and act complementarily to achieve them.     

Plant diversity and priority conservation areas of Northwestern Yunnan,China

The Global Plant Conservation Strategy of the Convention on Biological Diversity calls for “protection of 50% of the most important areas for plant diversity.” All global biodiversity analyses have identified the mountains of northwestern Yunnan as a conservation priority for plant diversity. The challenge we were presented with was how to transform this sweeping global recognition into regional geographic priorities and measurable conservation action. This challenge is especially acute in Yunnan where there are no readily accessible data on the distribution and status of plant diversity, yet great conservation urgency due to the rapid pace of economic development. We used endangered and endemic species to represent plant diversity as a whole due to time and financial constraints. To identify conservation priorities, we relied on experts’ knowledge, supplemented with a rapidly assembled plant diversity data base, rapid field assessments to fill knowledge gaps, and analyses of the spatial patterns of richness and habitat relationships. Ninety-eight endangered species and 703 endemic species occur in the project area. Experts identified nine Plant Diversity Conservation Areas for northwestern Yunnan, including eight specific geographies and one priority habitat. We found that the current nature reserve system is serving an important role in plant diversity protection, even though many of the reserves were not specifically designated for plant diversity considerations. This project provided a means for scientific experts to directly contribute to conservation decision-making by government and Non-Government Organizations, and essential information for the plant conservation in Northwestern Yunnan.     

Analysis of lectin-bound glycoproteins in snake venom from the Elapidae and Viperidae families

This paper describes an efficient method of studying the glycoproteins found in snake venom. The glycosylation profiles of the Elapidae and Viperidae snake families were analyzed using FITC-labeled lectin glycoconjugates. The Con A-agarose affinity enrichment technique was used to fractionate glycoproteins from the N. naja kaouthia venom. The results revealed a large number of Con A binding glycoproteins, most of which have moderate to high molecular weights. To identify the proteins, the isolated glycoprotein fractions were subjected to two-dimensional electrophoresis and MALDI-TOF MS. Protein sequences were compared with published protein databases to determine for their biological functions.     

Predicting how adaptation to climate change could affect ecological conservation: secondary impacts of shifting agricultural suitability

Aim:  Ecosystems face numerous well‐documented threats from climate change. The well‐being of people also is threatened by climate change, most prominently by reduced food security. Human adaptation to food scarcity, including shifting agricultural zones, will create new threats for natural ecosystems. We investigated how shifts in crop suitability because of climate change may overlap currently protected areas (PAs) and priority sites for PA expansion in South Africa. Predicting the locations of suitable climate conditions for crop growth will assist conservationists and decision‐makers in planning for climate change. Location:  South Africa. Methods:  We modelled climatic suitability in 2055 for maize and wheat cultivation, two extensively planted, staple crops, and overlaid projected changes with PAs and PA expansion priorities. Results:  Changes in winter climate could make an additional 2 million ha of land suitable for wheat cultivation, while changes in summer climate could expand maize suitability by up to 3.5 million ha. Conversely, 3 million ha of lands currently suitable for wheat production are predicted to become climatically unsuitable, along with 13 million ha for maize. At least 328 of 834 (39%) PAs are projected to be affected by altered wheat or maize suitability in their buffer zones. Main conclusions:  Reduced crop suitability and food scarcity in subsistence areas may lead to the exploitation of PAs for food and fuel. However, if reduced crop suitability leads to agricultural abandonment, this may afford opportunities for ecological restoration. Expanded crop suitability in PA buffer zones could lead to additional isolation of PAs if portions of newly suitable land are converted to agriculture. These results suggest that altered crop suitability will be widespread throughout South Africa, including within and around lands identified as conservation priorities. Assessing how climate change will affect crop suitability near PAs is a first step towards proactively identifying potential conflicts between human adaptation and conservation planning.