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1.
de Groot NS  Ventura S 《FEBS letters》2006,580(27):6471-6476
Increasing evidence indicates that protein aggregation in bacteria does not necessarily imply loss of biological activity. Here, we have investigated the effect of growth-temperature on both the activity and stability of the inclusion bodies formed by a point-mutant of Abeta42 Alzheimer peptide, using green fluorescent protein as a reporter. The activity in the aggregates inversely correlates with the temperature. In contrast, inclusion bodies become more stable in front of chemical denaturation and proteolysis when temperature increases. Overall, the data herein open new perspectives in protein production, while suggesting a kinetic competition between protein folding and aggregation during recombinant protein expression.  相似文献   

2.
The solubility of recombinant proteins produced in bacterial cells is considered a key issue in biotechnology as most overexpressed polypeptides undergo aggregation in inclusion bodies, from which they have to be recovered by solubilization and refolding procedures. Physiological and molecular strategies have been implemented to revert or at least to control aggregation but they often meet only partial success and have to be optimized case by case. Recent studies have shown that proteins embedded in inclusion bodies may retain residual structure and biological function and question the former axiom that solubility and activity are necessarily coupled. This allows for a switch in the goals from obtaining soluble products to controlling the conformational quality of aggregated proteins. Central to this approach is the availability of analytical methods to monitor protein structure within inclusion bodies. We describe here the use of Fourier transform infrared spectroscopy for the structural analysis of inclusion bodies both purified from cells and in vivo. Examples are reported concerning the study of kinetics of aggregation and structure of aggregates as a function of expression levels, temperature and co-expression of chaperones.  相似文献   

3.
The in vitro aggregation of the model GST–GFP fusion protein was induced by several effectors, including those mimicking variations occurring under cell stress conditions. In particular, we examined the effects of thermal treatments, redox state and pH variations, salt addition, and freezing and thawing cycles. The resulting aggregates displayed different morphologies as seen by electron microscopy, and different secondary and tertiary structures, as indicated by Fourier transform infrared spectroscopy and fluorescence. Therefore, proteins can be forced to undergo multiple aggregation pathways that lead to assemblies with different molecular structures and, possibly, specific physiological and pathological roles.In conclusion, great caution should be taken in inferring conclusions on protein aggregation and disaggregation in vivo from results obtained using aggregates produced under non-physiological perturbations.  相似文献   

4.

Background

Statins are the most commonly used drugs for the treatment of hypercholesterolemia. Their most frequent side effect is myotoxicity. To date, it remains unclear whether statins preferentially induce myotoxicity in fast- or in slow-twitch muscles. Therefore, we investigated these effects on fast- (extensor digitorum longus; EDL), slow- (soleus; SOL), and mixed-twitch muscles (diaphragm; DIA) in rats by comparing their contractile and molecular structural properties.

Methods

Simvastatin-induced functional changes were determined by muscle contraction measurements, and drug-induced molecular changes were investigated using Fourier transform infrared (FTIR) and attenuated total reflectance (ATR) FTIR spectroscopy.

Results

With simvastatin administration (30 days, 50 mg/kg), a depression in the force–frequency curves in all muscles was observed, indicating the impairment of muscle contractility; however, the EDL and DIA muscles were affected more severely than the SOL muscle. Spectroscopic findings also showed a decrease in protein, glycogen, nucleic acid, lipid content and an increase in lipid order and lipid dynamics in the simvastatin-treated muscles. The lipid order and dynamics directly affect membrane thickness. Therefore, the kinetics and functions of membrane ion channels were also affected, contributing to the statin-induced impairment of muscle contractility. Furthermore, a reduction in α-helix and β-sheet and an increase in random coil, aggregated and antiparallel β-sheet were observed, indicating the protein denaturation. Spectral studies showed that the extent of molecular structural alterations in the muscles following simvastatin administration was in the order EDL > DIA > SOL.

Conclusions

Simvastatin-induced structural and functional alterations are more profound in the fast-twitch than in the slow-twitch muscles.

General significance

Myotoxic effects of simvastatin are primarily observed in the fast-twitch muscles.  相似文献   

5.
A combination of lipid synthesis inhibitors was used to enhance the in vitro and in vivo permeation of levodopa (LD) across rat epidermis, and their influence on epidermal lipids was investigated using attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. Rat epidermis was treated with ethanol and a combination of atorvastatin (750 μg/7 cm2), cerulenin (20 μg/7 cm2), and β-chloroalanine (600 μg/7 cm2) for sustaining the reduced content of epidermal cholesterol, fatty acids (as triglycerides), and ceramide (as sphingosine), respectively, in viable rat skin. This treatment resulted in significant (P<.05) synthesis inhibition of skin lipids up to 48 hours and 6-fold enhancement in the in vitro permeation of LD. The effective plasma concentration of LD was achieved within 1 hour and maintained over 48 hours after topical application to rat epidermis treated with a combination of these lipid synthesis inhibitors. ATR-FTIR studies of inhibitor(s)-treated rat epidermis revealed a significant decrease (P<.05) in peak height and area for both asymmetric and symmetric C−H stretching absorbances, suggesting extraction of lipids. However, an insignificant (P<.05) shift in the frequency of these peaks suggested no fluidization of epidermal lipids by lipid synthesis inhibitors. A direct correlation was observed between epidermal lipid synthesis inhibition, decrease in peak height or area, and percutaneous permeation of LD. Skin lipid synthesis inhibition by a combination of lipid synthesis inhibitors seems to offer a feasible approach for enhancing the transcutaneous delivery of LD. Published: October 24, 2005  相似文献   

6.
The S2 state of the oxygen-evolving Mn-cluster of Photosystem II (PS II) is known to have different forms that exhibit the g =2 multiline and g = 4.1 EPR signals. These two spin forms are interconvertible at > 200 K and the relative amplitudes of the two signals are dependent on the species of cryoprotectant and alcohol contained in the medium. Also, it was recently found that the mutiline form can be converted to the g = 4.1 form by absorption of near-infrared light by the Mn-cluster itself at around 150 K [Boussac et al. (1996) Biochemistry 35: 6984–6989]. We have used light-induced Fourier transform infrared (FTIR) difference spectroscopy to study the structural difference in these two S2 forms. FTIR difference spectra for S2/S1 as well as for S2QA -/S1QA measured at cryogenic temperatures using PS II membranes in the presence of various cryoprotectants, and monohydric alcohols did not show any specific differences except for intensities of amide I bands, which were larger when ethylene glycol or glycerol was present in addition to sucrose. This result was interpreted due to more flexible movement of the protein backbones upon S2 formation with a higher cryoprotectant content. Light-induced difference spectra measured at 150 K using either blue light without near-infrared light or red plus near-infrared light also did not show any detectable difference. In addition, a different spectrum upon near-infrared illumination at 150 K of the PS II sample in which the S2 state had been photogenerated at 200 K exhibited no meaningful signals. These results indicate that the two S2 forms that give rise to the multiline and g = 4.1 signals have only minor differences, if any, in the structures of amino-acid ligands and polypeptide backbones. This conclusion suggests that conversion between the two spin states is caused by a spin-state transition in the Mn(III) ion rather than valence swapping within the Mn-cluster that would considerably affect the vibrations of ligands.This revised version was published online in October 2005 with corrections to the Cover Date.  相似文献   

7.
Pectinates with benzyl and decyl ester groups were prepared by alkylation of the tetrabutylammonium salt of pectic acid with benzyl and decyl bromides, respectively. The degree of esterification (DE) of the pectin derivatives was determined by diffuse reflectance infrared Fourier transform spectroscopy and the curve-fitting deconvolution method. A linear relationship between DE and the ratio of the peak area at 1745 cm−1 to the sum of the peak areas at 1745 and 1608 cm−1 was established with a high correlation coefficient 0.98. The deconvolution analysis using the curve-fitting method allowed the elimination of spectral interferences from pectin components and their degradation products. The limits of the method are given by DE 6 and 93%. The method was compared with chemical analysis and found to be equivalent in view of accuracy and repeatability (t-test, F-test). The method is applicable in analysis of natural or synthetic mixtures and/or crude pectin substances.  相似文献   

8.
Arteriovenous malformations (AVMs), masses of abnormal blood vessels which grow in the brain, produce high flow shunts that steal blood from surrounding brain tissue, which is chronically hypoperfused. Hypoperfusion is a condition of inadequate tissue perfusion and oxygenation, resulting in abnormal tissue metabolism. Fourier transform infrared (FTIR) spectroscopy is used in this study to investigate the effect of hypoperfusion on homogenized rat brain samples at the molecular level. The results suggest that the lipid content increases, the protein content decreases, the lipid-to-protein ratio increases, and the state of order of the lipids increases in the hypoperfused brain samples. FTIR results also revealed that, owing to hypoperfusion, not only the protein synthesis but also the protein secondary structure profile is altered in favor of -sheets and random coils. These findings clearly demonstrate that, FTIR spectroscopy can be used to extract valuable information at the molecular level so as to have a better understanding of the effect of hypoperfusion on rat brain.  相似文献   

9.
Attenuated total reflectance (ATR) spectra of plant leaves display complex absorption features related to organic constituents of leaf surfaces. The spectra can be recorded rapidly, both in the field and in the laboratory, without special sample preparation. This paper explores sources of ATR spectral variation in leaves, including compositional, positional and temporal variations. Interspecific variations are also examined, including the use of ATR spectra as a tool for species identification. Positional spectral variations generally reflected the abundance of cutin and the epicuticular wax thickness and composition. For example, leaves exposed to full sunlight commonly showed more prominent cutin- and wax-related absorption features compared with shaded leaves. Adaxial vs. abaxial leaf surfaces displayed spectral variations reflecting differences in trichome abundance and wax composition. Mature vs. young leaves showed changes in absorption band position and intensity related to cutin, polysaccharide, and possibly amorphous silica development on and near the leaf surfaces. Provided that similar samples are compared (e.g. adaxial surfaces of mature, sun-exposed leaves) same-species individuals display practically identical ATR spectra. Using spectral matching procedures to analyze an ATR database containing 117 individuals, including 32 different tree species, 83% of the individuals were correctly identified.  相似文献   

10.
The first fossil species of a Melissotarsus ant is described (Melissotarsus ethiopiensis n. sp.), suggesting that Ethiopian amber could be cenozoic rather than cretaceous. This hypothesis is supported by a Fourier transform infrared spectroscopy (FTIR) analysis of the amber itself, suggesting a weak maturation of the fossil resin, and a revision of the pyrolysis–gas chromatography–mass spectrometry (PY-GC-MS) analysis done by Schmidt and his collaborators in 2010, in an article in which the deposit was described for the first time.  相似文献   

11.
The LOV1 domain of the blue light Phot1-receptor (phototropin homolog) from Chlamydomonas reinhardtii has been studied by vibrational spectroscopy. The FMN modes of the dark state of LOV1 were identified by preresonance Raman spectroscopy and assigned to molecular vibrations. By comparing the blue-light-induced FTIR difference spectrum with the preresonance Raman spectrum, most of the differences are due to FMN modes. Thus, we exclude large backbone changes of the protein that might occur during the phototransformation of the dark state LOV1-447 into the putative signaling state LOV1-390. Still, the presence of smaller amide difference bands cannot be excluded but may be masked by overlapping FMN modes. The band at 2567 cm(-1) is assigned to the S-H stretching vibration of C57, the residue that forms the transient thio-adduct with the chromophore FMN. The occurrence of this band is evidence that C57 is protonated in the dark state of LOV1. This result challenges conclusions from the homologous LOV2 domain from oat that the thiolate of the corresponding cysteine is the reactive species.  相似文献   

12.
为了解乙二胺二琥珀酸(EDDS)诱导植物耐受硒(Se)胁迫的生理机制, 以彩叶草(Coleus blumei)为材料,采用营养液培养的方法、借助傅里叶变换-衰减全反射红外光谱(FTIR-ATR)和扫描电子显微镜-X-射线能量色散谱(SEM-EDXS)分析方法及生理指标的变化,研究1.0 mg/L Se胁迫条件下添加0、0.5、1.0、1.5、2.5、5.0 mmol/L EDDS 对彩叶草根系化学成分变化的影响。利用FTIR-ATR图谱分析发现,随着EDDS处理浓度的提高,彩叶草根系透射峰所对应峰形基本不变,而参与Se吸附的基团如羟基、酰胺基和指纹区等的透射峰发生了不同程度的位移。FTIR-ATR的特征峰与彩叶草根系响应Se胁迫的各生理指标变化趋势基本一致,且FTIR-ATR比传统的生理指标测定更敏感、便捷。SEM-EDXS扫描还发现随着EDDS处理浓度的升高,根系中K、Mg、Fe、Si 等元素的含量升高,而营养元素Ca含量降低。该研究结果可为深入了解EDDS处理下彩叶草对Se胁迫的响应机理提供科学依据。  相似文献   

13.
Colyophilization or codrying of subtilisin Carlsberg with the crown ethers 18-crown-6, 15-crown-5, and 12-crown-4 substantially improved enzyme activity in THF, acetonitrile, and 1,4-dioxane in the transesterification reactions of N-acetyl-L-phenylalanine ethylester and 1-propanol and that of (+/-)-1-phenylethanol and vinylbutyrate. The acceleration of the initial rate, V(0), ranged from less than 10-fold to more than 100-fold. All crown ethers activated subtilisin substantially, which excludes a specific macrocyclic effect from being responsible. The secondary structure of subtilisin was studied by Fourier-transform infrared (FTIR) spectroscopy. 18-Crown-6 and 15-crown-5 led to a more nativelike structure of subtilisin in the organic solvents employed when compared with that of the dehydrated enzyme obtained from buffer alone. However, the high level of activation with 12-crown-4 where this effect was not observed excluded overall structural preservation from being the primary cause of the observed enzyme activation. The conformational mobility of subtilisin was investigated by performing thermal denaturation experiments in 1,4-dioxane. Although only a small effect of temperature on subtilisin structure was observed for the samples prepared with or without 12-crown-4, both 18-crown-6 and 15-crown-5 caused the enzyme to denature at quite low temperatures (38 degrees C and 56 degrees C, respectively). No relationship between this property and V(0) was evident, but increased conformational mobility of the protein decreased its storage stability. The possibility of a "molecular imprinting" effect was also tested by removing 18-crown-6 from the subtilisin-18-crown-6 colyophilizate by washing. V(0) was only halved as a result of this procedure, an effect insignificant compared with the ca. 80-fold rate enhancement observed prior to washing in THF. This suggests that molecular imprinting is likely the primary cause of subtilisin activation by crown ethers, as recently suggested.  相似文献   

14.
The cellular isoform of the prion protein PrPC is a Cu2+-binding cell surface glycoprotein that, when misfolded, is responsible for a range of transmissible spongiform encephalopathies. As changes in PrPC conformation are intimately linked with disease pathogenesis, the effect of Cu2+ ions on the structure and stability of the protein has been investigated. Urea unfolding studies indicate that Cu2+ ions destabilise the native fold of PrPC. The midpoint of the unfolding transition is reduced by 0.73 ± 0.07 M urea in the presence of 1 mol equiv of Cu2+. This equates to an appreciable difference in free energy of unfolding (2.02 ± 0.05 kJ mol− 1 at the midpoint of unfolding). We relate Cu2+-induced changes in secondary structure for full-length PrP(23-231) to smaller Cu2+ binding fragments. In particular, Cu2+-induced structural changes can directly be attributed to Cu2+ binding to the octarepeat region of PrPC. Furthermore, a β-sheet-like transition that is observed when Cu ions are bound to the amyloidogenic fragment of PrP (residues 90-126) is due only to local Cu2+ coordination to the individual binding sites centred at His95 and His110. Cu2+ binding does not directly generate a β-sheet conformation within PrPC; however, Cu2+ ions do destabilise the native fold of PrPC and may make the transition to a misfolded state more favourable.  相似文献   

15.
Structural changes for a series of antimicrobial peptides in various solvents were investigated by a combined approach of FTIR and CD spectroscopy. The well-characterized and potent antimicrobial peptides indolicidin and tritrpticin were studied along with several analogs of tritrpticin, including Tritrp1 (amidated analog of tritrpticin), Tritrp2 (analog of Tritrp1 with Arg → Lys substitutions), Tritrp3 (analog of Tritrp1 with Pro → Ala substitutions) and Tritrp4 (analog of Tritrp1 with Trp → Tyr substitutions). All peptides were studied in aqueous buffer, ethanol and in the presence of dodecylphosphocholine (DPC) micelles. It was shown that tritrpticin and its analogs preferentially adopt turn structures in all solvents studied. The turn structures formed by the tritrpticin analogs bound to DPC micelles are more compact and more conformationally restricted compared to indolicidin. While several peptides showed a slight propensity for an α-helical conformation in ethanol, this trend was only strong for Tritrp3, which also adopted a largely α-helical structure with DPC micelles. Tritrp3 also demonstrated along with Tritrp1 the highest ability to interact with DPC micelles, while Tritrp2 and Tritrp4 showed the weakest interaction.  相似文献   

16.
该研究采用傅里叶变换红外光谱结合化学计量学,对条播、撒播、剪根后移栽、扦插和剪枝后移栽的滇龙胆进行了分析,以筛选滇龙胆的最佳栽培方式。结果表明:(1)不同栽培方式的滇龙胆原始谱图在峰形、峰位和峰强上有一定差异;用小波去噪法对光谱进行优化处理并进行偏最小二乘判别分析(Partial least squares discriminant analysis,PLS-DA),能较好地区分不同栽培方式的滇龙胆样品,PLS-DA二维得分图显示同一栽培方式的样品聚在一起,表明相同栽培方式的滇龙胆化学组成和含量差异较小;播种滇龙胆样品(条播和撒播)距离较近,移栽滇龙胆样品(剪根、扦插和剪枝)距离较近,而播种和移栽滇龙胆样品距离较远,表明栽培方式对滇龙胆化学成分的积累有影响。(2)滇龙胆四种主要成分总含量大小依次是剪枝剪根撒播条播扦插,除剪根后移栽,剪枝后移栽滇龙胆中四种主要成分总含量显著高于其他栽培方式下的滇龙胆(P0.05),剪枝后移栽滇龙胆质量最佳。(3)以液相数据为参考值,采用正交信号校正—偏最小二乘回归模型预测不同栽培模式滇龙胆中龙胆苦苷、马钱苷酸、獐牙菜苦苷和当药苷的含量。校正集和验证集的决定系数(R2)均大于0.90,校正均方根误差、交叉验证均方差和预测均方根误差均小于1.65,模型相关性和预测效果好,该方法对红外光谱分析在中药领域的推广应用提供了参考。  相似文献   

17.
为了解乙二胺二琥珀酸(EDDS)诱导植物耐受硒(Se)胁迫的生理机制,以彩叶草(Coleus blumei)为材料,采用营养液培养的方法、借助傅里叶变换-衰减全反射红外光谱(FTIR-ATR)和扫描电子显微镜-X-射线能量色散谱(SEM-EDXS)分析方法及生理指标的变化,研究1.0 mg/L Se胁迫条件下添加0、0.5、1.0、1.5、2.5、5.0 mmol/L EDDS对彩叶草根系化学成分变化的影响。利用FTIR-ATR图谱分析发现,随着EDDS处理浓度的提高,彩叶草根系透射峰所对应峰形基本不变,而参与Se吸附的基团如羟基、酰胺基和指纹区等的透射峰发生了不同程度的位移。FTIR-ATR的特征峰与彩叶草根系响应Se胁迫的各生理指标变化趋势基本一致,且FTIR-ATR比传统的生理指标测定更敏感、便捷。SEM-EDXS扫描还发现随着EDDS处理浓度的升高,根系中K、Mg、Fe、Si等元素的含量升高,而营养元素Ca含量降低。该研究结果可为深入了解EDDS处理下彩叶草对Se胁迫的响应机理提供科学依据。  相似文献   

18.
Studies on the binding affinity of protein to the active components of herbs are novel in biochemistry and are valuable for the information about speciation of drugs and exchange in biological systems. Alpinetin and cardamonin, two of the main constituents from the seeds of Alpinia katsumadai Hayata, have been used in traditional herbs as antibacterial, anti-inflammatory, and other important therapeutic activities of significant potency and low systemic toxicity. The interactions between two flavonoids analogs and lysozyme have been studied for the first time by spectroscopic method including Fourier transform infrared (FT-IR) spectroscopy, circular dichroism (CD) and UV-absorption spectroscopy in combination with Fluorescence quenching study. Both molecules showed high affinities to lysozyme under the experimental condition with drug concentrations from 3.33 × 10−6 to 2.67 × 10−5 mol L−1 for alpinetin and 1.67 × 10−6 to 13.33 × 10−6 mol L−1 for cardamonin. The alterations of protein secondary structure in the presence of drugs in aqueous solution were quantitatively estimated by the evidences from CD and FT-IR spectroscopy. The thermodynamic parameters obtained and the results of spectroscopic measurements suggest that hydrophobic and electrostatic interactions are the predominant intermolecular forces stabilizing two coordination compounds. The quenching mechanism and the number of binding site (n ≈ 1) were obtained by fluorescence titration data. The efficiency of energy transfer provided the binding distances of 4.04 and 5.90 nm for alpinetin-LYSO and cardamonin-LYSO systems, respectively.  相似文献   

19.
A new experimental approach based on FTIR spectroscopic measurements was proposed to study simultaneously the adsorption/desorption of water and organic solvent on solid enzyme and corresponding changes in the enzyme secondary structure in the water activity range from 0 to 1.0 at 25 °C. The effect of dioxane on the hydration/dehydration and structure of bovine pancreatic α-chymotrypsin (CT) was characterized by means of this approach. Dioxane sorption exhibits pronounced hysteresis. No sorbed dioxane was observed at low water activities (aw < 0.5) during hydration. At aw about 0.5, a sharp increase in the amount of sorbed dioxane was observed. Dioxane sorption isotherm obtained during dehydration resembles a smooth curve. In this case, CT binds about 150 mol dioxane/mol enzyme at the lowest water activities. Three different effects of dioxane on the water binding by the initially dried CT were observed. At aw < 0.5, water adsorption is similar in the presence and absence of dioxane. It was concluded that the presence of dioxane has little effect on the interaction between enzyme and tightly bound water at low aw. At aw > 0.5, dioxane increases the amount of water bound by CT during hydration. This behavior was interpreted as a dioxane-assisted effect on water binding. Upon dehydration at low water activities, dioxane decreases the water content at a given aw. This behavior suggests that the suppression in the uptake of water during dehydration may be due to a competition for water-binding sites on chymotrypsin by dioxane. Changes in the secondary structure of CT were determined from infrared spectra by analyzing the structure of amide I band. Dioxane induced a strong band at 1628 cm?1 that was assigned to the intermolecular β-sheet aggregation. Changes in the intensity of the 1628 cm?1 band agree well with changes in the dioxane sorption by CT. An explanation of the dioxane effect on the CT hydration and structure was provided on the basis of hypothesis on water-assisted disruption of polar contacts in the solid enzyme. The reported results demonstrate that the hydration and structure of α-chymotrypsin depend markedly on how enzyme has been hydrated — whether in the presence or in the absence of organic solvent. A qualitative model was proposed to classify the effect of hydration history on the enzyme activity-aw profiles.  相似文献   

20.
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