Dispersal of Amazonian Trees: Hydrochory in Swartzia polyphylla1

Hydrochory was investigated in the seeds of the Amazonian floodplain tree, Swartzia polyphylla, in which pods open on the tree to release one large seed. Seeds collected from beach drift along the Rio Negro showed a high percentage of floaters (82%). Yet most seeds sank following collection from: adult trees (89%), unflooded ground under adults (96%), and flooded ground under adults (86%). The specific gravity of the seeds was near that of water, 1.04 ± 0.03 for sinkers and 0.98 ± 0.02 for floaters. The ability to float was correlated directly with the volume of the air pocket between the two cotyledons, which varied from 5.6 to 20.5 percent of the total seed volume. In a long-term floatation test lasting 81 days, 45 percent of the seeds never floated, 33 percent always floated, and 22 percent first sank for one week and then floated for at least one month. Seeds that never floated eventually rotted, but not until days 63-73. Seeds that were floating at day 81, regardless of how long they had been floating, were placed on moistened filter paper for 18 days during which time 36 percent germinated, 45 percent rotted, and 19 percent did neither but remained viable. These results suggest that S. polyphylla achieves dimorphism in flotation of its seeds, some sinking and some floating, by producing seeds of continuous variation in specific gravity around a mean close to 1.00. Seeds that float can be dispersed long distances along river margins, while those that sink may be moved only marginally from the parent tree.     

Aboveground Roots in Amazonian Floodplain Trees1

Sediment‐rich rivers seasonally flood central Amazonian várzea forests, leading to periodic anoxic conditions in the rhizosphere and requiring morphological and structural adaptations, such as aboveground root systems. We investigated some possible relationships between root types and environmental factors in forest plots covering 3.1 ha of várzea in the Mamirauá Sustainable Development Reserve, Brazil. Digital elevation models of the study sites were obtained; sedimentation and soil texture were investigated to check relationship between position of trees on the flood gradient, soil conditions, and aboveground root systems. Different types of aboveground roots were closely related to flooding duration and habitat dynamics. Species subjected to higher and more prolonged floods tended to produce more aboveground roots than species subjected to lower and shorter inundations. Plank‐buttressing species increased with decreasing flood height and/or flood duration, and with increasing growth height and basal area. Habitats inundated for long periods were dominated by species with low growth heights and low basal areas, which formed stilt roots and aerial roots. Root system and sediment deposition showed a close relationship, plank buttressing being more common in sites subjected to lower sediment rates. In the disturbed sites close to the main river channel colonized by pioneer species, the occurrence of buttresses was lower than in less disturbed climax stages. No clear relationship was found between root systems and sediment grain sizes.     

Spatial and Temporal Trade-Offs by Bluegills in Floodplain River Ecosystems

Ecological trade-offs by organisms to minimize mortality and maximize growth is a foundational theme in ecology. Yet, these trade-offs are rarely examined within spatially complex, temporally variable ecosystems, such as floodplain rivers. Here, we evaluate ecological trade-offs across space and time for the bluegill (Lepomis macrochirus) in two unregulated river ecosystems in southeastern USA. Life-history differences among spatially segregated main channel and floodplain lake populations were used to assess effects of habitat type on bluegill fitness. Growth, condition, and gonadal somatic index were all significantly enhanced in floodplain lakes relative to the main channel. Furthermore, stomach fullness was significantly higher, and predator densities significantly lower in floodplain lakes thereby providing an ecological explanation for the life-history plasticity observed across the riverscape. However, historical observations suggested that although floodplain lakes are highly productive for bluegills, they are also prone to complete desiccation by drought approximately every 5 years, revealing the ultimate value of channel habitat, which does not dry, as desiccation refugia. Bluegills are faced with a balancing act associated with variation in foraging opportunities, and risks to predation and desiccation, that change in both the temporal and the spatial dimensions of floodplain rivers. The differential responses to these opportunities and risks help to explain why both habitats remain actively populated by bluegills, as well as many other organisms, in these and many other natural rivers.     

Spatial and Temporal Variation of Macroinvertebrate Drift in Two Neotropical Streams1

The detection of spatial variation in macroinvertebrate drift depends on the spatial scale of investigation in streams of the La Selva Biological Station, Costa Rica. Drift samples were taken in a spatially nested design, with two streams, two reaches per stream, two riffles per reach, and four replicate samples per riffle. Drift showed little variation among streams, but varied significantly at the scales of reach and riffle, with variation among samples also high. In addition, sampling took place at two temporal scales: diel and at two different periods that differed in rainfall conditions. Drift diel periodicity was a clear pattern, while only density of individuals varied among sampling periods. This is the first study of macroinvertebrate drift at multiple spatial scales, despite the recognition that multi‐scale studies are essential for a more complete understanding of community patterns and processes.     

Spatial Variability of Soil Properties in a Floodplain Forest in Northwest Spain

Floodplain forests are generally areas of high plant diversity compared with upland forests. Higher environmental heterogeneity, especially variation in belowground properties may help explain this high diversity. However, there is little information available on the spatial scale and pattern of belowground resources in floodplain forests. Geostatistics and coefficient of variation (CV) were used to describe the spatial variability of 20 soil properties ranging from essential plant nutrients, such as NH₄ or PO₄, to nonessential elements like Ti or V. The spatial variation of Si-to-(Al + Fe) ratio, an index of soil development, was also analyzed. Semivariograms and maps of selected properties were used to discriminate between the effect of flooding (and other mechanisms that may contribute to large scale trends in data) and local heterogeneity. The hypothesis that elements mainly cycled through biological processes (such as N) show different spatial properties than elements cycled through both biological and geological processes (such as P) or elements under strict geological control (such as Ti or V) is also presented. Redox potential was the most variable property (CV = 1.35) followed by mineral N, phosphate, organic matter, and carbon. Nonessential elements for organisms such as Si, Al, Ti, Rh, or V were less variable, supporting the hypothesis that biological control on soil properties leads to higher spatial variability. The range (the average distance within which the samples correlate spatially) varied between 3.89 m for water content to 18.5 m for the Si-to-(Al + Fe) ratio. The proportion of the total variance that can be modeled as spatial dependence (structural variance) was very variable, ranging between 0.34 for Fe and 0.96 for K. The addition of the large trend had a strong influence on the CV of most soil variables and created a gradient in C accumulation and the mineral weathering rate. The results suggest that flooding and other processes that are responsible for large spatial trends in the floodplain forest differentially affect biologically and geologically controlled variables with different turnover rates, thus providing a heterogeneous edaphic environment.     

Spatial and Temporal Variation in the Ant Occupants of a Facultative Ant-Plant1

Striking variation in ant occupation of a facultative ant-plant, Conostegia setosa (Melastomataceae), was found at three scales: local spatial, geographic, and temporal. C. setosa provides housing for ants and grows in groups of stems (clones). The ant occupants of 14 C. setosa clones were censused four times over a 14-mo period at the La Selva Biological Station, Costa Rica, and twice over a 9-mo period at the Nusagandi Station, Panama. Twelve facultative ant species occupied C. setosa stems at La Selva, compared to six facultative and one obligate species at Nusagandi. Occupancy (as % of stems ever occupied/clone) was higher at Nusagandi (median = 89%) compared to La Selva (65%). Occupancy varied among clones at La Selva but not at Nusagandi. C. setosa clones differed between sites, with larger clones and more small stems/clone at La Selva. Occupancy was influenced by clone structure; larger clones contained more ant species at both sites and had lower occupancy at La Selva. Occupancy was highest in larger stems and lowest in small stems at both sites. Temporally, percent occupation/clone did not differ among censuses at either site, but overall occupancy was lower in the dry season at La Selva. Turnover in ant occupants was higher at La Selva than at Nusagandi. The variation observed in this study is likely due to a number of factors, including differences between sites in plant population structure and history, differences between and within sites in ant faunas and their nesting requirements, and changes over space and time in microclimatic variables. Such high variation at multiple scales draws attention to the importance of long-term comparative studies of facultative animal-plant interactions.     

Edaphic and Floristic Variation within a 1‐ha Plot of Lowland Amazonian Rain Forest1

Several studies in lowland tropical rain forests have documented effects of local‐scale topographic variation on plant species distribution and abundance patterns. Few studies have compared the distribution patterns of more than one plant group, however, and even fewer have related these to measured physical and chemical soil characteristics. Here, we document such soil characteristics within a square 1‐ha plot in Amazonian Ecuador, and compare them to the distribution patterns of terrestrial pteridophytes, angiosperm ground herbs, and palms. Substantial variation in soil properties was found within the plot. The three plant groups showed highly correlated floristic patterns within the 1‐ha plot even after the effect of geographical distances had been taken into account. Mantel tests yielded significant correlations between edaphic patterns, as measured by distances in various soil and topographic characteristics, and floristic patterns. For all three plant groups, differences in elevation within the plot were highly correlated with floristic distances, and for terrestrial pteridophytes and palms, distances in soil calcium content and sand content were also important. Our results resembled those obtained at wider spatial scales with the same plant groups, which indicates that soil factors may play an important role for distribution and beta diversity of plants, even at the local scale.     

Short-Term Temporal Changes in Tree Live Biomass in a Central Amazonian Forest, Brazil

We monitored seventy-two 1 ha permanent plots spread over 64 km² of terra firme forest at Reserva Ducke (Manaus, Amazonas, Brazil) over 2-yr intervals to assess the effects of a soil and topographic gradient on the rate of change in the aboveground tree live biomass (AGLB). AGLB increased significantly over the 2-yr intervals, exhibiting a mean rate of change of 1.65 Mg/ha/yr (bootstrapped 95% CI: 1.15, 2.79). The rate of change varied according to tree size class; understory and sub-canopy trees exhibited higher rates of change. Over the whole period, the rate of change was not related to soil or topographic features of the plots, but there was evidence that the relationships varied depending on the year of measurement. In the plots monitored between 2001 and 2003 we found a significant relationship between AGLB change and the soil textural gradient, but this relationship was not evident in plots monitored between 2002 and 2004. This suggests that both the temporal variation in the soil–biomass change relationship and the size structure of the forest need to be included in models of biomass change in Amazonia. We also noted that the rate of biomass change is sensitive to the equation used to estimate AGLB. Allometric models that incorporate wood-density data provide higher per plot AGLB estimates, but lower rates of change, suggesting that variations in floristic composition have important implications for carbon cycling in diverse tropical forests.
Abstract in Portuguese is available at http://www.blackwell-synergy.com/loi/btp .     

Spatial and Temporal Variation of Phenanthrene-Degrading Bacteria in Intertidal Sediments

Phenanthrene-degrading bacteria were isolated from a 1-m² intertidal sediment site in Boston Harbor. Samples were taken six times over 2 years. A total of 432 bacteria were isolated and characterized by biochemical testing. When clustered on the basis of phenotypic characteristics, the isolates could be separated into 68 groups at a similarity level of approximately 70%. Several groups (a total of 200 isolates) corresponded to well-characterized species belonging the genera Vibrio and Pseudomonas. Only 51 of the 437 isolates (<11.7% of the total) hybridized to a DNA probe that encodes the upper pathway of naphthalene and phenanthrene degradation in Pseudomonas putida NCIB 9816. A cluster analysis indicated that the species composition of the phenanthrene-degrading community changed significantly from sampling date to sampling date. At one sampling time, 12 6-mm-diameter core subsamples were taken within the 1-m² site to determine the spatial variability of the degrading communities. An analysis of molecular variance, performed with the phenotypic characteristics, indicated that only 6% of the variation occurred among the 12 subsamples, suggesting that the subsamples were almost identical in composition. We concluded that the communities of phenanthrene-degrading bacteria in the sediments are very diverse, that the community structure undergoes significant change with time but does not vary significantly on a spatial scale of centimeters, and that the predominant genes that encode phenanthrene degradation in the communities are not well-characterized.     

Spatial and Temporal Variation of Seed Rain in the Canopy and on the Ground of a Tropical Cloud Forest

Spatial and temporal patterns of seed rain impact plant fitness, genetic and demographic structure of plant populations, and species' interactions. Because plants are sessile, they rely on biotic and abiotic dispersal agents to move their seeds. The relative importance of these dispersal agents may shift throughout the year. In tropical forests, seed dispersal of epiphytes constitutes a major but hitherto unknown portion of seed rain ecology. For the first time, we report on patterns of seed rain for both epiphytic and terrestrial plants across an entire year in a Neotropical montane forest. To examine seed rain, we placed traps in the canopy and on the ground. We analyzed seed dispersal syndrome (bird, mammal, wind) and plant habit (epiphyte, liana, shrub, small tree, large tree) across all seasons of the year (dry, misty, wet). We found that the community of species collected in canopy traps was significantly different from the community in ground traps. Epiphytes were the most common plant habit found in canopy traps, while large trees were most common in ground traps. Species with bird‐dispersed seeds dominated all traps. Species richness was significantly higher during the dry season in ground traps, but did not vary across seasons in canopy traps. Our results highlight the distinct seed rain found in the canopy and on the ground and underscore the importance of frugivores for dispersing both arboreal and terrestrial plants in tropical ecosystems.     

Risky Business: Temporal and Spatial Variation in Preindustrial Dryland Agriculture

Traditional dryland agriculture in the Pacific island was often labor-intensive and risky, yet settlement and farming in dry areas played an important role in the development of Polynesian societies. We investigate how temporal and spatial climatic fluctuations shape variation in agricultural production across dryland landscapes. We use a model that couples plant growth, climate, and soil organic matter dynamics, together with data from Kohala, Hawai'i, to understand how temperature, rainfall, nitrogen availability, and cropping activity interact to determine yield dynamics through time and space. Due to these interactions, the statistical characterization of rainfall alone is a poor characterization of agricultural yield. Using a simple linear model of human population dynamics, we show that the observed yield variation can affect long-term population growth substantially. Our approach to analyzing spatial and temporal fluctuations in food supply, and to interpreting the population consequences of these fluctuations, provides a quantitative evaluation of agricultural risk and human carrying capacity in dry regions.     

Virus-Bacterium Coupling Driven by both Turbidity and Hydrodynamics in an Amazonian Floodplain Lake

The importance of viruses in aquatic ecosystem functioning has been widely described. However, few studies have examined tropical aquatic ecosystems. Here, we evaluated for the first time viruses and their relationship with other planktonic communities in an Amazonian freshwater ecosystem. Coupling between viruses and bacteria was studied, focusing both on hydrologic dynamics and anthropogenic forced turbidity in the system (Lake Batata). Samples were taken during four hydrologic seasons at both natural and impacted sites to count virus-like particles (VLP) and bacteria. In parallel, virus-infected bacteria were identified and quantified by transmission electron microscopy (TEM). Viral abundance ranged from 0.5 × 10⁷ ± 0.2 × 10⁷ VLP ml⁻¹ (high-water season, impacted site) to 1.7 × 10⁷ ± 0.4 × 10⁷ VLP ml⁻¹ (low-water season, natural site). These data were strongly correlated with the bacterial abundance (r² = 0.84; P < 0.05), which ranged from 1.0 × 10⁶ ± 0.5 × 10⁶ cells ml⁻¹ (high water, impacted site) to 3.4 × 10⁶ ± 0.7 × 10⁶ cells ml⁻¹ (low water, natural site). Moreover, the viral abundance was weakly correlated with chlorophyll a, suggesting that most viruses were bacteriophages. TEM quantitative analyses revealed that the frequency of visibly infected cells was 20%, with 10 ± 3 phages per cell section. In general, we found a low virus-bacterium ratio (<7). Both the close coupling between the viral and bacterial abundances and the low virus-bacterium ratio suggest that viral abundance tends to be driven by the reduction of hosts for viral infection. Our results demonstrate that viruses are controlled by biological substrates, whereas in addition to grazing, bacteria are regulated by physical processes caused by turbidity, which affect underwater light distribution and dissolved organic carbon availability.Viruses are the most abundant and dynamic components of the aquatic microbial community (6, 31, 32). Viruses influence many biogeochemical and ecological processes, including nutrient cycling, system respiration, particle-size distribution, bacterial and algal biodiversity, species distribution, algal blooms, and genetic transfer between microorganisms (21, 49). In addition, viruses play a major role in aquatic microbial food webs by releasing carbon trapped in host cells to the dissolved organic carbon (DOC) pool and ultimately back to the bacterial community (11, 21). The action of viruses is an important mechanism of bacterial regulation in aquatic ecosystems, acting directly on bacterial populations and indirectly on bacterial diversity by decreasing the density of dominant bacterial species (31). Studies based on viral decay rates and electron microscopy analyses have shown that viruses can cause up to 40% of bacterial mortality and more than 10% of phytoplankton mortality in aquatic systems (11, 22, 48, 50, 54, 55). It also has been suggested that viral lysis and protistan grazing cause similar bacterial mortality in aquatic ecosystems (22, 40).Several environmental factors, including solar radiation and temperature, can influence viral abundance. Exposure to solar radiation decreases viral abundance in aquatic ecosystems, while low temperatures decrease their virulence (33, 56). However, the majority of the studies on virus ecology have been performed in temperate or polar regions, where seasonal changes in solar radiation and water temperature are more pronounced (26, 30, 32). Viral abundances have been little investigated in tropical aquatic ecosystems (6, 39) and particularly in the Amazonian region, where the abundance and activity of aquatic viruses have not been studied.The greatest watershed in the world is located in the Amazonian region. It is composed of clear-water, black-water, and turbid freshwater ecosystems, which are seasonally influenced by the flood pulse. The hydrologic pulse is characterized by a pronounced change in water level, defining the flood seasons. Nutrient sources and stocks and species dynamics vary according to the water level (25). During the high-water season (flood season), the tight connection between terrestrial and aquatic environments results in an increase in allochthonous DOC input and the dilution of inorganic nutrients and organisms. During the low-water season, there is an increase in nutrient concentrations, organism abundances, and the importance of autochthonous DOC. These seasonal changes differently impact ecosystem functions and aquatic community dynamics (5, 9, 18). For instance, bacterioplankton abundance is less changeable than phytoplankton abundance throughout the hydrological cycle due to the alternative sources of DOC (allochthonous in the high-water period and autochthonous in the low-water period) for bacterial communities (5, 24).Lake Batata is a clear-water Amazonian floodplain lake located in the watershed of the Trombetas River, a tributary of the Amazon River. As a clear-water Amazonian ecosystem, it contains low concentrations of suspended particles and inorganic nutrients (47). Lake Batata is distinct because it was impacted by bauxite tailings for 10 years (1979 to 1989), affecting 30% of the lake''s area. The tailings caused a huge increase in turbidity; large amounts of tailings settled on the sediment surface and often are resuspended by physical mixing or biotic movements (28). The presence of tailings resulted in a clear spatial variation in the lake, forming impacted and natural sites. Furthermore, tailing particles can directly act as a substrate for attaching bacteria and also can adsorb DOC (5).Previous studies on bacterio-, phyto-, and zooplankton communities have shown that flood pulse acts as the primary driver of plankton community structure in Lake Batata (5, 9, 24). Bauxite tailings also affect microbial processes in impacted sites, such as bacterial growth and production (5), photosynthesis rates and primary production (43), or the availability of food for zooplankton (8). However, there still is no evidence indicating a complementary (flood pulse and forced turbidity) effect among these factors in any microbial community. Based on published data, we assume that (i) bacterioplankton abundance is less changeable through the hydrologic cycle than phytoplankton abundance (5, 24), and (ii) tailing particles can act as a substrate for attaching bacteria and also can adsorb organic matter, which is controlled by the flood pulse (5). Therefore, we hypothesized that the relationship between viruses and bacteria in Lake Batata is modulated by a synergistic effect between the hydrological cycle and turbidity.     

Geographic and Temporal Trends in Amazonian Knowledge Production

The presence of researchers from Western (i.e., developed world) institutions in Amazonia has frequently been contentious due to fears of ‘scientific imperialism’ or suspicions that they may be exerting undue influence over research agendas and knowledge production to the detriment of local researchers. Such negative perceptions are widespread, but not well substantiated. A more nuanced understanding of these issues requires information on who is conducting research in Amazonia and how knowledge production has changed over time. We performed a bibliometric analysis on Thomson Reuters'ISI Web of Science of all research articles about the Amazon published in three time periods: 1986–1989, 1996–1999, and 2006–2009. We found that the number of articles published and the diversity of countries involved in Amazonian research increased dramatically over the three time periods. The representation of several Amazonian countries—especially Brazil—increased, while the proportion of articles without a single author from an Amazonian country also increased. The results indicate that the research capacity of Amazonian countries has increased, but that leadership of high‐impact projects may still largely reside with researchers from developed countries.     

Spatial and Temporal Variation of Archaeal,Bacterial and Fungal Communities in Agricultural Soils

Background

Soil microbial communities are in constant change at many different temporal and spatial scales. However, the importance of these changes to the turnover of the soil microbial communities has been rarely studied simultaneously in space and time.

Methodology/Principal Findings

In this study, we explored the temporal and spatial responses of soil bacterial, archaeal and fungal β-diversities to abiotic parameters. Taking into account data from a 3-year sampling period, we analyzed the abundances and community structures of Archaea, Bacteria and Fungi along with key soil chemical parameters. We questioned how these abiotic variables influence the turnover of bacterial, archaeal and fungal communities and how they impact the long-term patterns of changes of the aforementioned soil communities. Interestingly, we found that the bacterial and fungal β-diversities are quite stable over time, whereas archaeal diversity showed significantly higher fluctuations. These fluctuations were reflected in temporal turnover caused by soil management through addition of N-fertilizers.

Conclusions

Our study showed that management practices applied to agricultural soils might not significantly affect the bacterial and fungal communities, but cause slow and long-term changes in the abundance and structure of the archaeal community. Moreover, the results suggest that, to different extents, abiotic and biotic factors determine the community assembly of archaeal, bacterial and fungal communities.     

Temporal and Spatial Diversity and Distribution of Arboreal Carabidae (Coleoptera) in a Western Amazonian Rain Forest1

Diversity of arboreal carabid beetles was sampled by fumigation in 100 3 × 3 m stations within a 100 × 1000 m terra firme forest plot in Ecuadorian Amazonia. Nine sampling dates from January 1994 to October 1996 yielded 2329 individuals belonging to 318 species of which more than 50 percent were undescribed species. A high percentage of the species sampled were rare; the proportion that occurred once per sampling date (singletons) ranged from 50.0 to 62.5 percent. Estimates of species richness were from 82 to 282 species of arboreal carabids in the study plot on a given sampling date. Most richness values were greater than 173 species. Species accumulation curves attained asymptotes for all but one sampling date, indicating that an adequate level of sampling effort was used to characterize the diversity of carabid fauna. Total accumulation curves based on pooled data failed to reach asymptotes. There was a high turnover in species composition between sampling dates; less than 50 percent of the species between the majority of sampling dates were shared, suggesting that the total species pool may be extremely large. Although species composition changed seasonally, species richness varied little. Spatial autocorrelation analysis revealed that the structure of this species assemblage was significantly patterned at distances below 280 m. Taken together, the large percentage of undescribed species, die failure of the overall species accumulation curves to level off, and the high turnover in species composition indicate that the species diversity of carabid beetles is far higher than previously thought.