A set of polymorphic microsatellites for Vochysia ferruginea,a promising tree for land reclamation in the Neotropics

Vochysia ferruginea Mart. (Vochysiaceae) is a gap colonist of Neotropical forest. As a result of its high tolerance of low‐nutrient acidic conditions and high aluminium and iron concentrations, and its high potential seed and pollen dispersal, it is a promising timber species for commercial development as regenerated or reclaimed forest on degraded land. We present here the primer sequences for 10 polymorphic simple sequence repeat loci for use with V. ferruginea to assess fine‐scale genetic structure and gene flow dynamics.     

Temporal resource partitioning and climatological influences on colony flight and foraging of stingless bees (Apidae; Meliponini) in Ugandan tropical forests

We studied the flight activity of two stingless bee species (Meliponula ferruginea and Meliponula nebulata) and the environmental factors influencing their flight. Two morphs of M. ferruginea were studied: M. ferruginea (brown) in Budongo forest and M. ferruginea (black) in Bwindi Park. The two bee species exited their nests in characteristically distinct foraging bouts suggesting that the recruitment methods used may be direct leading or ‘piloting’. The number of individuals in a returning bout was less than that in an exiting bout suggesting recruits do not follow experienced foragers the whole distance to food source, a phenomenon referred to as ‘partial piloting’. Flight period of M. ferruginea (black) and M. nebulata in Bwindi was restricted to a few hours each day. Meliponula nebulata foraged in the drizzle; a survival strategy, which could promote its reproductive fitness. Nectar and pollen foraging took place throughout the day while the removal of debris was greater in the late hours of the morning. Increased temperature resulted in significant increase in number of exiting bees. There was increase in number of exiting bees with decrease in humidity up to an optimal of 78% thereafter, increase in humidity resulted in reduced number of exiting bees.     

Structure and biomass carbon of Olea ferruginea forests in the foot hills of Malakand division,Hindukush range mountains of Pakistan

The sub-tropical broadleaved forests dominates the foothills in Malakand division, Hindukush range mountains of northern Pakistan. Olea ferruginea is one of the major constituents of these forests having a wide distribution with no quantitative relationships between stand structural parameters and biomass carbon which renders to estimate carbon budget in the region. We investigated the forest structure, growing stock characteristics and biomass carbon stocks of the Olea ferruginea dominated forests in the foot-hills of Hindukush range mountains in Pakistan. The study highlights species diversity, tree distribution pattern and biomass carbon in respective diameter classes. We recognized five Olea ferruginea vegetation types by using an importance values (IV). Results showed that the forest comprised of 19 woody species belonging to 13 families of 10 Genera. Importance value (IV) for Olea ferruginea was ranged from 53 to 96 (mean = 69.4 ± 2.7) with a stem density of 215 to 417 ± 6.4 ha^?1. Average basal area was 6.69 ± 1.3 m² ha^?1 and volume was 44.2 ± 9.8 m³ ha^?1. Stem biomass and total biomass was 49.82 ± 11.1 and 100.1 ± 22.6 t ha^?1 respectively whereas, the stored carbon in the living biomass was 49.54 ± 11.3 t ha^?1. These findings revealed that Olea ferruginea forests has great potential to utilize and store atmospheric carbon. We concluded from our results, that the potential of carbon capturing and storage of the area can be increasesd on extensive managements of high biomass carbon density through proper scientific methods.     

Genetic Consequences of Multigenerational and Landscape Colonisation Bottlenecks for a Neotropical Forest Pioneer Tree, Vochysia ferruginea

Deforestation and abandonment of neotropical agricultural land has led to rapid exploitation by pioneer species. As recolonised populations may be founded by a limited number of individuals, there is significant potential for genetic bottlenecks. Previous studies of pioneer tree dynamics have failed to consider population density interactions (by sampling populations with different densities) and the multigenerational consequences of recolonisation. In this paper we examine the genetic outcomes of a clearance/recolonisation regime for a Costa Rican long-lived pioneer species, Vochysia ferruginea, at a series of sites with different densities and across multi-generational cohorts (old growth forest, secondary forest and seedlings) using variation for amplified fragment length polymorphism (AFLPs) and single sequence repeats (SSRs, microsatellites). A clearance/recolonisation phase was found to significantly increase fine-scale genetic structuring (average intensity of spatial genetic structure, Sp [SSR]?=?0.0358) compared to old growth forest (Sp?=?0.0126), and significantly reduces genetic diversity (Shannon’s index [AFLP]?=?0.202 and 0.271–0.355 for other forest histories following density correction), which compounds over generations (e.g. at Tirimbina: old growth forest, allelic richness, R_T [SSR]?=?8.86; secondary forest R_T?=?7.95; seedlings R_T?=?4.76). Spatial structuring of closely related individuals suggests that V. ferruginea colonises sites via early invaders, which establish patches with half sib relationship. The variability observed between cohorts for genetic differentiation and inbreeding coefficients suggests that the presence of remnant trees can have an important impact on the genetic make up of recolonised populations. One main concern from these results is that if secondary forest blocks harbour reduced genetic diversity and persist in the landscape, then species like V. ferruginea may be forced into a downward spiral of diversity loss if old growth remnants, which harbour higher diversity, are cleared and secondary blocks are used as reforestation sources.     

Nitrogen fixation activity of a filamentous,nonheterocystous cyanobacterium in the presence and absence of exogenous,organic substrates

Gallionella ferruginea is able to utilize Fe(II) and the reduced sulfur compounds sulfide and thiosulfate as electron donor and energy source. Tetrathionate and elemental sulfur, on the other hand, are not metabolized. In sulfide-O₂ microgradient cultures G. ferruginea grows at the interface between the oxidizing and the reducing zones. Optimal growth depends on low oxygen and sulfide concentrations. Establishing within the gradient protects the bacterium from too high sulfide concentrations. G. ferruginea excretes extracellular polymeric substances (EPS). While in FeS-gradient cultures 2×10⁶ cells/ml were obtained the bacterial mass could be increased to 1–3×10⁸ cells/ml in shaken batch cultures using thiosulfate as substrate. A further increase of bacterial mass by adding an organic carbon source was not possible confirming that G. ferruginea is an obligate autotrophic organism. When growing on sulfide or thiosulfate the otherwise characteristic twisted stalk consisting of ferric hydroxide is lacking. It is thus shown to be a metabolic end product of Fe(II) oxidation rather than metabolically active cellular material.     

Comparison of wood-inhabiting myxomycetes in subalpine and montane coniferous forests in the Yatsugatake Mountains of Central Japan

To demonstrate altitudinal gradients (and resulting temperatures) that affect myxomycete biodiversity and species composition, we statistically compared myxomycete assemblages between a subalpine coniferous forest and a montane pine forest within the region of the Yatsugatake Mountains, Nagano Prefecture, Central Japan. In summer and autumn field surveys during 2003–2010, 53 myxomycete taxa (with varieties treated as species) were observed from 639 records of fruiting bodies in the subalpine forest and 32 taxa were detected from 613 records in the montane forest. There were 20 species in common between the assemblages and the percentage similarity index was 0.400. Myxomycete biodiversity was higher in the subalpine than in the montane forest. Nine myxomycete species were statistically frequent occurrences in the subalpine forest and appeared in autumn: Lamproderma columbinum, Cribraria macrocarpa, Trichia botrytis, Physarum newtonii, Diderma ochraceum, Enteridium splendens, Elaeomyxa cerifera, Trichia verrucosa, and Colloderma oculatum. Five species were restricted to appear in the subalpine forest: Cribraria purpurea, Cribraria rufa, Cribraria ferruginea, Cribraria piriformis, and Lepidoderma tigrinum. Dead wood in the subalpine forest provided a breeding habitat for specific myxomycetes that inhabit cold areas; that is those areas having geographical features of decreasing temperature and increasing elevation, such as the temperate area of Central Japan.     

The botanical diversity in the Ayawasi area, Irian Jaya, Indonesia

In the karst-dominated Ayawasi area (Bird's Head peninsula), the botanical diversity and its relation to soil and geological substratum were studied. An inventory in 22 plots of 0.1 ha was made of all plants (1945) with a dbh 10 cm (mainly trees). Myrtaceae, Burseraceae, and Euphorbiaceae were the most frequent families (considering relative number of individuals), whereas Myrtaceae, Lauraceae, and Meliaceae were most species-rich. The most frequent genera were Syzygium, Haplolobus, and Lithocarpus, and most species-rich were Syzygium, Garcinia, Elaeocarpus, and Pouteria. The most frequent species were Anisoptera thurifera, Tristaniopsis ferruginea, and Gymnacranthera farquhariana var. zippeliana. Species richness was greater in plots in mixed forest (38–57 species, average 48) than in limestone forest (26–42 species, average 33) and secondary forest (21–46 species, average 34). Some very common species, such as Xanthophyllum novoguineense (Polygalaceae) and Macaranga suwo (Euphorbiaceae), were hitherto herbarium rarities, known from very few collections only. Species dominating earlier investigated forests elsewhere in the Bird's Head Peninsula range from being less important to absent in the presently investigated forest. Explanatory factors for this phenomenon are variation due to the geographical distance, the high beta-diversity of tropical forests in general, habitat differences, and differences in research methods, in particular in their scale.     

Cocoa agroforestry is less resilient to sub‐optimal and extreme climate than cocoa in full sun

Cocoa agroforestry is perceived as potential adaptation strategy to sub‐optimal or adverse environmental conditions such as drought. We tested this strategy over wet, dry and extremely dry periods comparing cocoa in full sun with agroforestry systems: shaded by (i) a leguminous tree species, Albizia ferruginea and (ii) Antiaris toxicaria, the most common shade tree species in the region. We monitored micro‐climate, sap flux density, throughfall, and soil water content from November 2014 to March 2016 at the forest‐savannah transition zone of Ghana with climate and drought events during the study period serving as proxy for projected future climatic conditions in marginal cocoa cultivation areas of West Africa. Combined transpiration of cocoa and shade trees was significantly higher than cocoa in full sun during wet and dry periods. During wet period, transpiration rate of cocoa plants shaded by A. ferruginea was significantly lower than cocoa under A. toxicaria and full sun. During the extreme drought of 2015/16, all cocoa plants under A. ferruginea died. Cocoa plants under A. toxicaria suffered 77% mortality and massive stress with significantly reduced sap flux density of 115 g cm^?2 day^?1, whereas cocoa in full sun maintained higher sap flux density of 170 g cm^?2 day^?1. Moreover, cocoa sap flux recovery after the extreme drought was significantly higher in full sun (163 g cm^?2 day^?1) than under A. toxicaria (37 g cm^?2 day^?1). Soil water content in full sun was higher than in shaded systems suggesting that cocoa mortality in the shaded systems was linked to strong competition for soil water. The present results have major implications for cocoa cultivation under climate change. Promoting shade cocoa agroforestry as drought resilient system especially under climate change needs to be carefully reconsidered as shade tree species such as the recommended leguminous A. ferruginea constitute major risk to cocoa functioning under extended severe drought.     

Usefulness of marine protected areas as tools for preserving the highly endangered limpet,Patella ferruginea,in the Mediterranean Sea

Patella ferruginea is the most endangered endemic marine invertebrate of western Mediterranean rocky shores. From 2012 to 2015, we performed a census and an ecological study for this gastropod mollusc in the Zembra Archipelago National Park in Tunisia, where a large population still remains. In 1986, a total of 20,000 individuals were estimated, with 0.7?ind/m², 4.4?cm adult mean size and low recruitment rate. In 2009, the estimated population reached 38,559 individuals with 2.65?ind/m², 5.42?cm adult mean size and high recruitment rate. During the present work, 43,790 individuals were estimated in 2012, 27,359 in 2013, 33,170 in 2014 and 40,404 in 2015, with an average density ranging from 0.1 to 8.5 individuals per square metre, but reaching as many as 25?ind/m² on some shores. This makes the archipelago one of the most important Mediterranean ‘hot spots’ for P. ferruginea, as it has a large and well-conserved population of this species. Variability of the population size is influenced by various biotic and abiotic factors, but is principally impacted by poaching of the species. The poachers target individuals larger than 6?cm in length, and the sex ratio study has shown that over 70% of individuals become females at that size. In addition, high recruitment rates were recorded in 2012 and 2013, but these decreased in 2014 and 2015, although population numbers show the opposite pattern. Moreover, growth rate is low and P. ferruginea may need many years to reach a large adult size. The loss of reproductive potential due to poaching inevitably causes a significant imbalance in the limpet population. Our results indicate the importance of the National Park for P. ferruginea and underline the need for this species to be protected and monitored over a long period to provide the most appropriate management measures.     

Nesting ecology of stingless bees and potential threats to their survival within selected landscapes in the northern Volta region of Ghana

Stingless bees are key insects in the tropics, both as pollinators of crops and as contributors to the maintenance of floral diversity through pollination of wild plants. This study investigated the nesting ecology and threats to three stingless bee species: Meliponula bocandei (Spinola), Meliponula ferruginea (Lepeletier) and Dactylurina staudingeri (Gribodo) in three landscapes characterized as forest with logging and wild honey hunting; farmlands that experience annual wild fires and a national park. The study was carried out in July 2011 and February 2012. A total of 93 stingless bee nests were found in 48 ha (density 1.9 nests per ha), 81% in tree cavities and 19% in deserted termite mounds and in the ground. M. ferruginea was the only species using deserted termite mounds (seventeen nests) and in the ground (1 nest). Although tree size (diameter at breast height, DBH >15 cm) and density of large tree were important for nest site selection, there was no influence of tree species. M. bocandei may be restricted in choice of nest site in farmland areas by the absence of trees. Reduced availability of trees in agricultural landscape together with bush burning and wild honey collecting is the main threats to stingless bees survival and abundance which need to be addressed for their successful conservation in Ghana.     

Structural and Floristic Heterogeneity in a 30-Year-Old Costa Rican Rain Forest Restored on Pasture Through Natural Secondary Succession

Relatively little information exists on neotropical secondary rain forests that have progressed beyond the pioneer stages of succession, or on the potential of natural regeneration to restore forest on large areas. We determined the structural and floristic characteristics (10 cm dbh) of a 30‐year‐old secondary forest developing on a 32.5 ha pasture on hilly terrain, abandoned after use of moderate intensity. Ten 0.24 ha sample plots covered the range of site conditions. The forest was dominated by long‐lived pioneer tree species; overall, the majority of species (70%) was vertebrate dispersed but the majority of individuals (52%) was of wind‐dispersed species. Tree species, including the dominants, were a mixture of those present in old‐growth and adventives colonizing from agricultural land. The forest was very heterogeneous. Vochysia ferruginea‐dominated stands characterized slopes with soils of high exchangeable acidity, while the adventive Cordia alliodora dominated sites with gentler topography and soils of lower acidity. Structural differences between the two forest types were slight, but Cordia forest had significantly greater species diversity and absolute and relative abundances of vertebrate‐dispersed tree species than Vochysia forest, which had significantly greater absolute and relative abundances of wind‐dispersed tree species. These latter differences between forest types, as well as the wide structural variation of the forest as a whole, were probably largely due to spatial and temporal variation in seed rains, some of it linked to the characteristics of the dominant species. Rain forest restoration on large pastures may depend greatly on wind dispersal and adventive tree species, and techniques for silvicultural diagnosis must be developed as a basis for the management of heterogeneous successional stands. Studies of early colonization of pastures should be expanded to focus on the causes of heterogeneity in older forests.     

Status and Breeding Sites of Three Presumed Endangered Scottish Saproxylic Syrphids (Diptera, Syrphidae)

From 1987 to 1999 efforts were made to understand the status and breeding sites of three presumed endangered flies in Britain: Blera fallax (Linnaeus), Hammerschmidtia ferruginea (Fallén) and Callicera rufa Schummel (Diptera, Syrphidae). Historical data on flight periods, localities and breeding sites were collated from the literature and captured specimens in museums and other collections. Using these data, life cycles were investigated, and cited and other localities searched for adults and early stages. Looking for early stages was more productive than looking for adults. B. fallax is the most endangered. It has declined in abundance, is restricted to two localities and, in 1999, breeding sites were destroyed at one of these localities. In contrast C. rufa is widespread and not uncommon throughout northern Scotland. H. ferruginea is not as endangered as B. fallax but adverse factors such as habitat destruction affect most of its sites.     

Sewage pollution and extinction risk: an endangered limpet as a bioindicator?

The mollusc Patella ferruginea, endemic to the Mediterranean, is the most endangered marine species on the list of the European Council Directive 92/43/EEC and it is under serious risk of extinction. In spite of the low abundances and restricted distribution of this limpet, important populations have been found in the harbour of Ceuta, north Africa. The main objective of the present study was to characterise, for the first time, the effects of sewage pollution on P. ferruginea and related limpet species, and to evaluate the potential value of these limpet assemblages as bioindicators, using univariate and multivariate analyses. Physicochemical parameters and limpets were sampled in nine stations located at 0, 1, 2, 4, 8, 16, 32, 64 and 128 m away from the discharge point of a sewage effluent in Ceuta harbour. The stations closer to the outfall (0, 1, 2, 4 and 8) were characterised by higher values of turbidity, phosphate and ammonia in the water column, and organic matter, faecal coliforms and faecal Streptococci in sediments. A total of six limpet species were found and studied (Patella ferruginea, P. caerulea, P. nigra, P. rustica, P. ulyssiponensis and Siphonaria pectinata); the number of limpet species increased with increasing distance from the outfall, while diversity and evenness reached the highest values at intermediate sites. Siphonaria pectinata and P. caerulea were the most resistant and abundant species, while P. ferruginea was the most sensitive species to sewage pollution, only found at stations from 32 to 128 m. The distribution of this endangered limpet seems mainly affected by the pollution gradient, and not by the competition with the remaining limpets. The results of this study should be taken into account in future programmes of management and conservation of P. ferruginea.     

Growth of Iron-Oxidizing Bacteria Gallionella ferruginea and Leptothrix cholodnii in Oligotrophic Environments: Ca,Mg, and C as Limiting Factors and G. ferruginea Necromass as C-Source

Abstract

Iron-oxidizing bacteria (FeOB) can successively populate low-nutrient aquatic environments and adapt to a broad concentration range of alkaline earth metals, with optimum conditions widely differing from one species to another. For the most abundant known FeOB genera Gallionella and Leptothrix, there is a lack of reports on substrate affinity for calcium and magnesium and necromass assimilability. Single nutrient and combined affinity for Ca and Mg of a wild Gallionella ferruginea isolate and a Leptothrix cholodnii strain as well as growth of heterotrophic L. cholodnii on necromass of autotrophic G. ferruginea were determined by cell density measurements. G. ferruginea responds with Monod-shaped preferences and thus favors waters rich in Ca and Mg. Maximum growth occurred at Ca concentrations five times above those of commonly used modified mineral Wolfe’s medium. L. cholodnii showed a Monod-shaped preference in the low concentration range and an inhibitory response to increasing hardness: concentrations >2?mM Ca or >0.6?mM Mg allow only 50 or 75%, respectively, of maximum specific cell densities. Considering the concentration range with a Monod-shaped response (for L. cholodnii only lower concentration range), both FeOB show a type I independent colimitation for Ca and Mg with lower requirements of Mg than Ca. On a C-limited medium containing G. ferruginea necromass as the only C-source, L. cholodnii cell counts were higher by two orders of magnitude compared to pyruvate medium. Thus, the necromass may serve as a primary C-source for heterotrophic FeOB and other heterotrophic bacteria with technical and economical relevance.     

Differentiation between Gallionella and Metallogenium

Summary The DNA base composition and the sensitivity to iron of an ironoxidizing Metallogenium was determined. A comparison of the organism with Gallionella ferruginea suggests that the iron-oxidizing Metallogenium may be a common contaminant of G. ferruginea cultures.     

Speciation inVirgilia (Fabaceae): Allopatric divergence followed by introgression?

Levels of variation revealed by starch gel-electrophoresis were compared with morphological and chemical variation within and among the species and subspecies ofVirgilia:V. oroboides subsp.oroboides, V. oroboides subsp.ferruginea andV. divaricata. The data sets exhibited concordance in that all point to a very close relationship between the taxa. Differences are mostly quantitative and an overlapping east-west gradient of character variation is indicated. Analysis of morphological and chemical characters showed thatV. oroboides subsp.ferruginea andV. divaricata are relatively distinct, whereas allozyme analysis indicated a high degree of genetic similarity among populations of these two taxa. The observed pattern of variation suggests relatively recent speciation with subsequent introgressive hybridisation resulting in a geographical and ecological gradient.     

The conservation requirements of an endangered hoverfly, Hammerschmidtia ferruginea (Diptera, Syrphidae) in the British Isles

The saprophagous larva of the endangered hoverfly, Hammerschmidtia ferruginea (Fallén, 1817) (Diptera, Syrphidae) develops in wet, decaying sap under the bark of dead trees and branches of aspen, Populus tremula L. (Saliaceae). However this breeding site is transient: wet decay builds up patchily over 1.5–2 years of the tree or branch dying and lasts for a further 1–3 years before the bark falls off. Between 1990 and 2006, H. ferruginea swung through a cycle of abundance when the number of localities where it was detected dropped from 13 to 5 and back to 8. Fluctuations in amounts of dead wood caused by winds and storms probably explain this population swing. When there are few dead trees and branches, H. ferruginea breeds in sap flows on live P. tremula trees and populations are maintained but at low levels. To prevent local extinctions during periods when fallen wood is scarce, breeding habitat can be supplemented by felling trees and branches. Fallen wood with wet decaying sap is also important as an assembly site for mate selection. Adult food plants include flowers of bird cherry Prunus padus, rowan Sorbus aucuparia and hawthorn Crategus monogyna. Adults were recorded dispersing up to 1 km but are probably able to move further than this.     

Contrasting Growth Rate Patterns in Eighteen Tree Species From a Post-Hurricane Forest in Nicaragua1

Hurricane Joan struck the Caribbean Coast of Nicaragua in October 1988 causing extensive damage to the lowland rain forest of the zone. Six permanent plots were established in 1990 and the growth rates of all individuals in a total area of 6000 m² monitored for six years. Eighteen of the species were abundant enough to measure species-specific growth rates. The post hurricane successional process included a great deal of resprouting of pre-existing individuals and the current state of the forest includes a low but very dense canopy, suggesting that competition is entering an intensive phase. Specific growth rates between the time of the hurricane and the present thus represent establishment or regenerative growth rates and provide an indication of whether or not distinct regeneration niches exist. Three distinct patterns of growth rate seem apparent, fast-growing heliophyles (eight species), slow-growing resprouters (nine species), and vochysia ferruginea, which seems to have a special pattern.     

Benefits associated with the stalk of Gallionella ferruginea,evaluated by comparison of a stalk-forming and a non-stalk-forming strain and biofilm studies in situ

Factors that regulate and induce stalk formation by the iron-oxidizing and stalk-forming bacterium Gallionella ferruginea were studied in laboratory cultures and in situ. A stalk-forming strain, Sta⁺, and a non-stalk-forming strain, Sta^-, were used for comparative studies of the benefits associated with the stalk. Two different growth media were used: a ferrous sulfide medium (FS-medium), with slow oxidation of iron giving high concentrations of toxic oxygen radicals and a ferrous carbonate medium (FC-medium), with fast iron oxidation giving low concentration of the toxic oxygen radicals. It was found that Sta⁺ cells grown in the FS-medium survived 3 weeks longer than Sta^- cells grown in the FS-medium. When each strain was grown in the FC-medium, the Sta^- cells had an advantage and survived 8 weeks longer than the Sta⁺ cells. No difference in survival was found for Sta⁺ cells grown in FS-medium compared to growth in FC-medium. In laboratory cultures, the average stalk length per cell values were 7–2.5 times higher (92 h and 150–300 h growth, respectively) in a medium with 620 m iron than in a medium with 290 m iron. Gallionella ferruginea Sta⁺ outcompeted Sta^- cells when inoculated as mixed populations in FC-medium. It has previously been suggested that stalk formation in vitro is induced by oxygen. To confirm this observation, biofilm development in natural waters was studied in two wells, one with trace amounts of oxygen (LH) and one without (TH). A dense biofilm developed on surfaces exposed to flowing well LH water, but no biofilm developed in well TH. Stalks were formed in water samples from both wells when allowed to make contact with air. This work demonstrates for the first time that the stalk has a protecting function against the toxic oxygen radicals formed during the chemical iron oxidation. It also shows that it is the oxidation rate of the ferrous iron and not its concentration that is harmful to the cells. The stalk gives G. ferruginea a unique possibility to colonize and survive in habitats with high contents of iron, inaccessible for bacteria without a defense system against the oxidation of iron. Correspondence to: L. Hallbeck     

新疆不同栖息地赤麻鸭肠道菌群多样性研究

【目的】探讨天山北麓赤麻鸭肠道细菌多样性及其与栖息地环境之间的关系。【方法】于2017年秋季在天山北麓5个栖息地随机采取新鲜的赤麻鸭粪便,用细菌16S rDNA通用引物扩增V3–V4区并进行高通量测序,使用BLAST、USEARCH和QIIME等软件和在线工具分析各栖息地样品菌群组成与差异。【结果】从赤麻鸭粪便样本中共获得16S rDNA有效序列408 036条,聚类产生1 014个操作分类单元(operational taxonomic unit,OTU)。样品中的细菌分属25个门和397个属。在门分类阶元上,变形菌门和厚壁菌门在所有样品中均为优势菌,相对丰度较高的还包括拟杆菌门、梭杆菌门、放线菌门、蓝藻细菌、螺旋体门、Saccharibacteria和迷踪菌门,但以上细菌在各栖息地样品中的相对丰度存在差异。在属分类阶元上,各栖息地样品的菌群组成差异显著,艾比湖、安集海水库、奎屯水库、蘑菇湖水库和八一水库样品的优势菌分别为鲸杆菌属、巨单胞菌属、假单胞菌属、乳酸菌属和链球菌属。对不同样品菌群组成和差异分析表明,赤麻鸭胃肠道菌群组成受环境和食源的影响较大。【结论】新疆5个栖息地赤麻鸭肠道...