Allelic ladders and reference genotypes for a rigorous standardization of poplar microsatellite data

A correct identification of members of the poplar hybrid complex Populus × canadensis is essential in breeding programs and studies in introgressive gene flow. Molecular marker protocols have been developed for this purpose. However, due to missing standards, these techniques have so far not been suited to the transfer of results between different laboratories. We present here a powerful system of nuclear microsatellite DNA (nSSR) fingerprints, standardized by allelic ladders and reference genotypes. Seven nSSR loci provided fingerprints of 65 commercial poplar clones. Their alleles were used to construct allelic ladders. Thus, a first standardized register of poplar clones is now available. All procedures were optimized according to simplified DNA extraction protocols, multiplexed PCR and electrophoresis procedures. Corresponding data originating from two different electrophoretic platforms in different laboratories were congruent when the allelic ladder was used. Unambiguous differentiation of the clones was based on a very low probability of identity (PI) of 1.95 × 10⁻⁸. Our results revealed discrepancies between clone denotations and genetic fingerprints. This suggests that, potentially, members of the clone collection could have been mixed up, thus confirming the demand for rigorous standards. The protocol presented can be exploited in a manifold way, e.g. to enlarge the present clonal molecular data base, or to use it for purposes of certification and control. Furthermore, the allelic ladders are recommended for use in poplar population genetic studies across different laboratories. The allelic ladders and single sample reference genotypes can be obtained on demand.     

Integrated responses of hydraulic architecture, water and carbon relations of western hemlock to dwarf mistletoe infection

Dwarf mistletoe (Arceuthobium spp.) is a hemiparasite that is said to be the single‐most destructive pathogen of commercially valuable coniferous trees in many regions of the world. Although its destructive nature is well documented in many respects, its effects on the physiology of its host are poorly understood. In the present study, water and carbon relations were characterized over a range of scale from leaf to whole tree in large (40‐ to 50‐m‐tall) individuals of western hemlock (Tsuga heterophylla (Raf.) Sarg.) that were either heavily infected, or uninfected with hemlock dwarf mistletoe (Arceuthobium tsugense). Specific hydraulic conductivity (k_s) of infected branches was approximately half that of uninfected branches, yet leaf‐specific conductivity (k_L) was similar because leaf area : sapwood area ratios (A_L : A_S) of infected branches were lower. Pre‐dawn and minimum leaf water potential and stomatal conductance (g_s) were similar among infected and uninfected trees because adjustments in hydraulic architecture of infected trees maintained k_L despite reduced k_s. Maximum whole‐tree water use was substantially lower in infected trees (approximately 55 kg d^?1) than in uninfected trees (approximately 90 kg d^?1) because reduced numbers of live branches in infected trees reduced whole‐tree A_L : A_S in a manner consistent with that observed in infected branches. Maximum photosynthetic rates of heavily infected trees were approximately half those of uninfected trees. Correspondingly, leaf nitrogen content was 35% lower in infected trees. Foliar δ¹³C values were 2.8‰ more negative in infected than in uninfected individuals, consistent with the absence of stomatal adjustment to diminished photosynthetic capacity. Adjustments in hydraulic architecture of infected trees thus contributed to homeostasis of water transport efficiency and transpiration on a leaf area basis, whereas both carbon accumulation and photosynthetic water use efficiency were sharply reduced at both the leaf and whole‐tree scale.     

Resource‐directed foraging of the Neotropical mistletoe Struthanthus flexicaulis (Loranthaceae)

• Some parasitic plants are capable of vegetative propagation, which allows them access to new hosts and improves nutrient availability. We aimed to determine what factors positively influence this propagation in the xylem‐tapping Struthanthus flexicaulis, focusing on the use of directed foraging as a means of optimising access to resources.
• The study site was a rupicolous plant community in southeast Brazil. We evaluated how the success of branch propagation (by contagion) of the mistletoe is influenced by the crown height and density of its main host, the legume Mimosa calodendron. Oriented foraging was tested through comparing the response of mistletoe branches toward a potential host (resources) or a plastic net (no resources).
• Successful contagion was related to high density and the departure height of a branch from a host crown. In a high‐density area, 89% of branches reached a new host versus 21% in a low‐density area. Formation of an appressorium on either the plastic nets or hosts elicited branch growth reorientation towards it, as well as development of new branches. These responses were significantly stronger towards hosts than nets, and attributed to effective xylem tapping.
• The foraging strategy of S. flexicaulis benefits from branch response (growth and reorientation) to the development of appressoria and their resulting haustoria. The growth of appressoria on non‐resource substrates and the ensuing response optimises the mistletoe spread by allowing these substrates to act as physical support for spreading branches and to infect a host that was previously out of reach.

     

THE LIFE CYCLE AND TOXICITY OF PFIESTERIA PISCICIDA REVISITED1

Despite use of excellent molecular techniques, Litaker et al. (2002) cannot provide insights about the life history of toxic Pfiesteria piscicida because they showed no data in support of having used toxic strains; rather they presented evidence that they used non‐inducible strains. Litaker et al. did not find amoeboid stages or a chrysophyte‐like cyst stage in several cultures and unequivocally concluded that the stages do not exist in all P. piscicida strains. Thus, they did not consider the tenet that absence of evidence does not constitute proof of absence. Apparent discrepancies between the research by Litaker et al. and previous research on Pfiesteria can be resolved as follows: First, Litaker et al. did not use toxic strains. We have reported findings (similar to Litaker et al.) showing few amoeboid transformations in non‐inducible strains, which manifest some but not all of the forms that have been documented in some toxic strains. We, and others, have documented active toxicity to fish, transformations to amoebae, and chrysophyte‐like cysts in some clonal toxic strains. Second, the data from several recent publications, which were available but not mentioned by Litaker et al. or by Coats (2002) in accompanying commentary, have verified P. piscicida amoebae, chrysophyte‐like cysts, and other stages in some toxic strains through a combination of approaches including PCR data from clonal cultures.     

Strategies for Gardening Denuded Coral Reef Areas: The Applicability of Using Different Types of Coral Material for Reef Restoration

Recreational and other human activities degrade coral reefs worldwide to a point where efficient restoration techniques are needed. Here we tested several strategies for gardening denuded reefs. The gardening concept consists of in situ or ex situ mariculture of coral recruits, followed by their transplantation into degraded reef sites. In situ nurseries were established in Eilat's (Northern Red Sea) shallow waters, sheltering three types of coral materials taken from the branching species Stylophora pistillata (small colonies, branch fragments, and spat) that were monitored for up to two years. Pruning more than 10% of donor colonies' branches increased mortality, and surviving colonies displayed reduced reproductive activity. Maricultured isolated branches, however, exceeded donor colony life span and reproductive activity and added 0.5–45% skeletal mass per year. Forty‐four percent of the small colonies survived after 1.5‐year mariculture, revealing average yearly growth of 75 ± 32%. Three months ex situ maintenance of coral spat (sexual recruits) prior to the in situ nursery phase increased survivorship. Within the next 1.5 years, they developed into colonies of 3–4 cm diameter. Nursery periods of 2 years, 4–5 years, and more than> 5 years have been estimated for small colonies, spat, and isolated branches, respectively. These and other results, including the possible use of nubbins (minute fragments the size of a single or few polyps), are discussed, revealing benefits and drawbacks for each material. In situ coral mariculture is an improved practice to the common but potentially harmful protocol of direct coral transplantation. It is suggested that reef gardening may be used as a key management tool in conservation and restoration of denuded reef areas. The gardening concept may be applicable for coral reefs worldwide through site‐specific considerations and the use of different local coral species.     

Inflorescence development of Whytockia (Epithemateae, Gesneriaceae) and phylogenetic implications within Gesneriaceae

 The inflorescence development in Whytockia has been studied in order to explore the developmental basis for inflorescence architecture. The developmental pattern of the pair-flowered cyme in Whytockia basically conforms to that of most members in Gesneriaceae. However, the additional flower beside the terminal one in Whytockia is not equivalent to the frontal flower as in other Gesneriaceae because the former is located in the front-lateral position while the latter is in the front-median position. Also, the zigzag monochasial branching system in Whytockia represents the consecutive front-lateral branches rather than the lateral branches as in other Gesneriaceae. The inflorescence in Whytockia is flowering in a basipetal sequence, and its seemingly acropetal flowering sequence is due to the vigorous development of the consecutive front-lateral branches. In addition, the inflorescence of Whytockia does not represent the basic unit of the inflorescence in Epithemateae, and it is derived as compared to that of Rhynchoglossum. The development relationships of the inflorescence between Whytockia and its allies in Epithemateae are discussed on the basis of developmental and comparative evidence. Received February 15, 2002; accepted September 17, 2002 Published online: December 11, 2002     

Comparison of the Composition and Antimicrobial Activities of the Essential Oils of Green Branches and Leaves of Egyptian Navel Orange (Citrus sinensis (L.) Osbeck var. malesy)

The essential oils isolated from the leaves and green branches of the Egyptian navel orange trees were analyzed by GC and GC/MS. A total of 33 and 24 compounds were identified from the oils of the leaves and branches accounting for 96.0% and 97.9%, respectively, of the total detected constituents. The major ones were sabinene (36.5; 33.0%), terpinen‐4‐ol (8.2; 6.2%), δ‐3‐carene (7.0; 9.4%), limonene (6.8; 18.7%), trans‐ocimene (6.7; 6.1%), and β‐myrcene (4.5; 4.4%). The antimicrobial activities of both oils were evaluated using the agar‐well diffusion method toward three representatives for each of Gram‐positive bacteria, Gram‐negative bacteria, and fungi. The oil of leaves was more effective as antimicrobial agent than that of the branches. Streptococcus pyogenes, Staphylococcus aureus, Salmonella typhimurium, and Aspergillus fumigatus were the most sensitive bacteria and fungi by the leaves oil.     

Foliage Density of Branches and Distribution of Plant‐Dwelling Spiders1

We compared the abundance of foliage‐living spiders among seven widespread plant species comprising a gradient of levels of structural complexity in a tropical savannah‐like region in southeastern Brazil. Spider abundance among plant species was positively related to the foliage density of their branches. A field experiment using artificial branches was carried out to isolate foliage density effects on spider abundance, thus controlling both biomass and texture effects. Artificial branches were attached to branches of three plant species with similar foliage density, Baccharis dracunculifolia, Diplusodon virgatus, and Microlicia fasciculata. Two treatments were set up: artificial branches with higher foliage density attracted more spiders than those with lower foliage density. The guild structure of hunting spiders was compared among vegetative branches of three plant species with different levels of foliage density: B. dracunculifolia, D. virgatus, and Bidens gardneri. Stalker, and ambusher spiders were more abundant on branches of B. dracunculifolia, which had the highest foliage density. Foliage‐runners constituted the dominant guild on D. virgatus and B. gardneri, which have lower foliage density branches. Our results suggest that branch architecture is the most important factor determining the abundance of plant‐dwelling spiders in the study area independently of branch biomass, leaf surface area or texture.     

Growth rate of the carrageenophyte Kappaphycus alvarezii (Rhodophyta, Gigartinales) in vitro

Unialgal cultures were established trom a 2.5 g branch ot a brown variant ot Kappaphycus alvarezii (Doty) Doty ex P. Silva, with the main objective to produce branches for monthly outplanting in the sea. Ditterent conditions were tested to optimize production ot branches in the laboratory. The best growth was obtained under culture conditions of 25 ± 2°C, 170–210 μmol photons m² s^?1, 14:10 LD photoperiod and salinity 32–35‰. Three culture media (Provasoli,‘F/2’and von Stosch) were tested. Deleterious ettects were observed in branches incubated continuously in full‐ or halt‐strength Provasoli's enriched seawater medium (PES). Exponential growth rates ot about 3% day^?1 were obtained using PES, pulse‐fed 24 h per week, or other diluted media used continuously (one‐quarter strength ‘F/2’and half‐strength von Stosch). Laboratory‐grown branches with mean weights from 2.97 to 4.25 g were successfully introduced into the sea at Ubatuba, SP, Brazil (23°26.9′S, 45°0.3′W) an area with mean monthly seawater temperature from 20.3 to 28.5°C (extremes: 17.0–31.0°C). Transplantation of branches produced in unialgal culture, as done in the present study, avoids the risk of introduction of unwanted species into new areas.     

Anthropogenic disturbance and streams: land use and land‐use change affect stream ecosystems via multiple pathways

1. Ecosystems are strongly influenced by land use practices. However, identifying the mechanisms behind these influences is complicated by the many potential pathways (often indirect) between land use and ecosystems and by the long‐lasting effects of past land use. To support ecosystem restoration and conservation efforts, we need to better understand these indirect and lasting effects. 2. We constructed structural equation models (SEM) to evaluate the direct and indirect effects of contemporary (2002) land use (agriculture and development) and change in land use from 1952 to 2002 on present‐day streams (n = 190) in Maryland, U.S.A. Additional variables examined included site location, system size, altitude, per cent sand in soils, riparian condition, habitat quality, stream water NO₃‐N and benthic macroinvertebrate and fish measures of stream condition. Our first SEM (2002 Land Use) included the proportions of contemporary agriculture and development in catchments in the model. The second SEM (Land Use Change) included five measures of land use change (proportion agricultural in both times, developed in both times, agricultural in 1952 and developed in 2002, forested in 1952 and developed in 2002 and agricultural in 1952 and forested in 2002). 3. The data set fit both SEMs well. The 2002 Land Use model explained 71% of variation in NO₃‐N and 55%, 42% and 38% of variation in riffle quality, macroinvertebrate condition and fish condition, respectively. The Land Use Change model explained similar amounts of variation in NO₃‐N (R² = 0.72), riffle quality (R² = 0.57) and macroinvertebrate condition (R² = 0.44) but slightly more variation in fish condition (R² = 0.43). 4. Both models identified pathways through which landscape variables affect stream responses, including negative direct effects of latitude on macroinvertebrate and fish conditions and positive direct and indirect effects of altitude on NO₃‐N, riffle quality and macroinvertebrate and fish conditions. The 2002 Land Use model showed contemporary development and agriculture had positive total effects on NO₃‐N (both through direct pathways); contemporary development had negative effects on macroinvertebrate condition. The Land Use Change model showed that contemporary developed land that was forested in 1952 had no effects on NO₃‐N; current developed land that was developed or agricultural in 1952 showed positive effects on NO₃‐N. Forests that were agricultural in 1952 had negative effects on NO₃‐N, suggesting reduced NO₃‐N export with reforestation. The Land Use Change model also showed negative total effects of all types of contemporary developed land (developed, agricultural or forested in 1952) on benthic condition. Developed land that was forested in 1952 had negative effects on fish condition. Forest sites that were agricultural in 1952 had negative effects on fish and macroinvertebrate conditions, suggesting a long‐term imprint of abandoned agriculture in stream communities. 5. Our analyses (i) identified multiple indirect effects of contemporary land use on streams, (ii) showed that current land uses with different land use histories can exhibit different effects on streams and (iii) demonstrated an imprint of land use lasting >50 years. Knowledge of these indirect and long‐term effects of land use will help to conserve and restore streams.     

Strong between‐site variation in New Caledonian crows’ use of hook‐tool‐making materials

Functional tool use requires the selection of appropriate raw materials. New Caledonian crows Corvus moneduloides are known for their extraordinary tool‐making behaviour, including the crafting of hooked stick tools from branched vegetation. We describe a surprisingly strong between‐site difference in the plant materials used by wild crows to manufacture these tools: crows at one study site use branches of the non‐native shrub Desmanthus virgatus, whereas only approximately 7 km away, birds apparently ignore this material in favour of the terminal twigs of an as‐yet‐unidentified tree species. Although it is likely that differences in local plant communities drive this striking pattern, it remains to be determined how and why crows develop such strong site‐specific preferences for certain raw materials.     

High nocturnal CO2 emanation guides the sand fly Phlebotomus papatasi to sugar‐rich plants

Abstract In arid areas, Phlebotomus papatasi obtains essential carbohydrates by feeding on green tissues of plants. There is a great variation in sugar content, metabolic rates and dark respiration between conspecific plants, and also between branches and leaves of the same plant. It is hypothesized that high nocturnal release of CO₂ may guide the sand flies to rich sugar sources. Comparisons of Ph. papatasi feeding on branches of different plant species demonstrate a significant positive correlation between the level of sugar in leaves, the rate of sand fly feeding on them and the size of ingested sugar meals. Mean nocturnal CO₂ emanation of low‐sugar Ricinus communis branches is 26.5 ppm and that of sugar rich branches is 86.3 ppm above room level. Low‐sugar Capparis spinosa branches release 45.0 ppm and the emission from sugar rich branches is 76.0 ppm above room level. Branches with similar emissions, placed behind net partitions, are used in no‐choice orientation experiments: R. communis branches releasing high CO₂ levels are approached by 53.7% of the flies compared with 3.0% of flies that orientate to low CO₂ branches. Capparis spinosa with high CO₂ emission are approached by 9.8% of the flies compared with 0.95% of flies that orientate to low CO₂ branches.     

Reassessment of the taxonomic status of Gelidium subfastigiatum (Gelidiales, Rhodophyta)

The taxonomic relationship between Gelidium elegans Kützing and Gelidium subfastigiatum Okamura, two morphologically similar species of the red algal genus Gelidium (Gelidiaceae) growing in the north‐western Pacific, was critically re‐examined. Gelidium subfastigiatum has been distinguished from G. elegans by its more robust thalli, which have antrorse tooth‐like branches, although their distinction has been said to be often difficult or impossible. We determined the nuclear encoded internal transcribed spacer 1 (ITS1) for 14 samples from eight populations of this G. elegans/ G. subfastigiatum complex, and two types of ITS1 sequences were found. Analysis of seasonal variations of subterminal portions of major branches revealed that this complex includes two groups: one possessing the type 1 ITS1 sequence and antrorse tooth‐like branches that are subterminally thickened and widened during only colder months, and another possessing the type 2 ITS1 sequence and thin and narrow branches throughout the year. These groups should be recognized as separate species; the former is assigned to G. subfastigiatum and the latter to G. elegans.     

Influence of N-fertilization and Fungicide Strategies on Fusarium Head Blight Severity and Mycotoxin Content in Winter Wheat

Nitrogen (N) fertilization and fungicide applications are still subject to discussion concerning the influence on Fusarium head blight (FHB) and related mycotoxin accumulation. Field studies were made in 2000–2001 and 2001–2002 to investigate the effect of two N‐rates and 11 plant protection treatments on FHB severity and the content of FHB‐related mycotoxins, namely deoxynivalenol (DON) and zearalenone (ZEA) under conditions of natural infection. The treatments applied can be summarized as (i) an integrated approach using a decision support system, (ii) the use of two plant strengtheners, Bion^® (benzo [1,2,3]thiadiazole‐7‐carbothioic acid S‐methyl‐ester, BTH) and a compound based on the biomass of the cyanobacterium Spirulina platensis, (iii) the use of plant strengtheners in combination with a broad‐spectrum fungicide and (iv) common fungicide strategies against foliar diseases. Fusarium infections as well as the analysed mycotoxins were observed at low levels in both years. Disease severity was significantly increased by conventional N‐fertilization only in 2001. Neither FHB severity nor mycotoxin accumulation was significantly influenced by any of the treatments, although treatments without fungicides appeared to lead to lower disease severities. In 2002, there was a tendency towards higher disease severities when common fungicide strategies were applied. Mycotoxin contamination was found in grain samples from both years. In 2001 DON was mainly traceable, whereas in 2002 ZEA was also detected. Mycotoxin contamination was influenced by N‐fertilization rather than by the treatments. In 2001, the DON content was significantly increased due to the conventional N‐supply. Our results indicate that less intensive fungicide strategies, including plant strengtheners, are no worse than common fungicide strategies under conditions of low FHB severity and mycotoxin accumulation. Immoderate N‐fertilization however, can increase mycotoxin levels significantly even under conditions unfavourable for Fusarium spp.     

Ulva diversity in the Yellow Sea during the large‐scale green algal blooms in 2008–2009

In the Yellow Sea of China, large‐scale green tides have broken out for three consecutive years from 2007 to 2009. As part of the efforts to localize the algal source, two cruises were conducted in the early stage and the outbreak stage of the bloom in 2009. We analyzed the morphological and genetic diversity of drifting Ulva specimens and culture‐derived isolates from seawater sampled in different localities. For phylogenetic analyses, the nuclear encoded ribosomal DNA internal transcribed spacer region (ITS nrDNA) and the plastid encoded large subunit of ribulose‐1, 5‐bisphosphate carboxylase/oxgenase gene (rbcL) were used. Our molecular and morphological data indicate that the dominant free‐floating Ulva species in 2008 and 2009 possibly belonged to a single strain of the U. linza‐procera‐prolifera (LPP) clade. The ITS sequences from bloom‐forming algal samples with dense branches were identical to those from U. linza‐like specimens without branches derived from the Yellow Sea. Microscopic individuals of the dominant Ulva strain were detected in eight stations, revealing that spore dispersal in the water helped to enlarge biomass in the water during the outbreak stage of green tide in the Yellow Sea.     

Distribution of plant‐dwelling spiders: Inflorescences versus vegetative branches

Abstract The influence of the architecture of vegetative branches on the distribution of plant‐dwelling spiders has been intensively studied, and the effects on the aggregation of individuals in several spider species on plants include variation in prey abundance, availability of predator‐free refuges and smoother microclimate conditions. The emergence of inflorescences at the reproductive time of the plants changes branch architecture, and could provide higher prey abundance for the spiders. The distribution of spiders between inflorescences and vegetative branches was compared on four widespread plant species in a Brazilian savannah‐like system. Inflorescences attracted more spiders than vegetative branches for all plant species sampled. The influence of branch type (inflorescence and vegetative) on spider distribution was also evaluated by monitoring branches of Baccharis dracunculifolia DC. in vegetative and flowering periods for 1 year, and through a field experiment carried out during the same period where artificial inflorescences were available for spider colonization. Artificial inflorescences attached to B. dracunculifolia branches attracted more spiders than non‐manipulated vegetative branches for most of the year. However, this pattern differed among spider guilds. Foliage‐runners and stalkers occurred preferentially on artificial inflorescences relative to control branches. The frequencies of ambushers and web‐builders were not significantly different between treatment and control branches. However, most ambush spiders (65%) occurred only during the flowering period of B. dracunculifolia, suggesting that this guild was influenced only by natural inflorescences. The experimental treatment also influenced the size distribution of spiders: larger spiders were more abundant on artificial inflorescences than on vegetative branches. The hypothesis that habitat architecture can influence the spider assemblage was supported. In addition, our observational and experimental data strongly suggest that inflorescences can be a higher quality microhabitat than non‐reproductive branches for most plant‐dwelling spiders.     

Carbon pathways to zooplankton: insights from the combined use of stable isotope and fatty acid biomarkers

1. Numerous studies have quantified the relative contribution of terrestrial‐ and phytoplankton‐derived carbon sources to zooplankton secondary production in lakes. However, few investigated the pathways along which allochthonous and autochthonous carbon (C) was actually conveyed to consumers. 2. We suggest that the combined use of fatty acid and stable isotope biomarkers could solve this issue. We conducted a field study on two oligotrophic lakes, in which primary production increased significantly between 2002 and 2004. We used modelling to estimate the contribution of terrestrial‐ and phytoplankton‐derived C to particulate organic C (POC) and zooplankton production from their δ¹³C values in 2002 and 2004. 3. According to the isotope model, phytoplankton‐derived C accounted for a major part of the POC pool in both lakes and supported more Daphnia sp. production in 2004 than in 2002. Fatty acid data revealed that increased contribution of algal‐C to Daphnia production, although common between both lakes, was achieved through C pathways that were different. In one lake, Daphnia grazed more intensively on phytoplankton, whereas in the other there was greater grazing on bacteria. In the latter case, the increased primary production resulted in greater release of algal‐derived dissolved organic C (DOC), which may have supported extra bacterial and eventually Daphnia, production. 4. This is the first study illustrating that the combination of fatty acid and stable isotope biomarkers could further our understanding of the factors controlling the relative magnitude of food webs pathways conveying organic matter to zooplankton.     

Genotyping of Indian <Emphasis Type="Italic">Yersinia pestis</Emphasis> strains by MLVA and repetitive DNA sequence based PCRs

India experienced two plague outbreaks in Gujarat and Maharastra during 1994 and then in the Shimla district of Himachal Pradesh during 2002. Yersinia pestis strains recovered from rodents and pneumonic patients during the 1994 outbreaks, pneumonic patients from the 2002 Shimla outbreak and rodents trapped on the Deccan Plateau during a surveillance activity carried out in 1998 were characterized by MLVA, ERIC-PCR and ERIC-BOX-PCR. MLVA genotyping of Indian Y. pestis strains revealed strains of 2 Orientalis, 1 Mediaevalis and 1 Antiqua genotypes distributed in three distinct branches corresponding to their biovar. The Orientalis genotype strains recovered from the 1994 outbreaks and 1998 surveillance activity clustered in one branch while the Antiqua biovar strains from the Shimla outbreak and the Mediaevalis strain recovered from a rodent trapped on the Deccan Plateau region during surveillance formed the other branches. The Orientalis Y. pestis strains recovered from rodents and patients from the 1994 plague outbreaks exhibited similar MLVA, ERIC-PCR and ERIC-BOX-PCR profiles and these were closely related to the Orientalis strains recovered from the rodents trapped on the Deccan Plateau. These data provide evidence for the possible linkage between the Y. pestis strains resident in the endemic region and those that were associated with the 1994 plague outbreaks. Mediaevalis and Antiqua biovars also were recovered from the environmental reservoir on the Deccan Plateau and from the pneumonic patients of 2002 plague outbreak. Therefore, as in Central Asian and African regions, Antiqua and Mediaevalis biovars seem to be well established in the Indian subcontinent as well. ERIC-PCR DNA fingerprinting delineated genotypes similar to those defined by MLVA. Thus ERIC-PCR appears to have the potential to be used as a molecular marker in the molecular epidemiological investigations of plague.     

108 years of change in spatial pattern following selective harvest of a Pinus ponderosa stand in northern Arizona,USA

Questions: How did an initial tree harvest in 1894 influence the spatial and temporal patterns of Pinus ponderosa recruitment? How do these patterns compare to our understanding of P. ponderosa stand dynamics prior to Euro‐American settlement? How might spatial pattern information, particularly with respect to patch characteristics, inform current restoration and management practices? Location: A 2.59‐ha permanent sample plot in the Fort Valley Experimental Forest, Flagstaff, Arizona. The plot was selectively harvested in 1894 and measured in 1909 and 2002. Methods: We used historical stem‐map and ledger data, contemporary data, and dendrochronological techniques to reconstruct stand structure (tree size, age, location) in three scenarios: (1) unharvested (1909), (2) harvested (1909), and (3) contemporary (2002). We used Clark and Evans' R, Ripley's K(t) univariate analysis, and correlogram analysis to assess the spatial pattern in each scenario. We also used Ripley's K₁₂(t) bivariate analysis and tree age data to examine spatial and temporal recruitment patterns as observed in the contemporary scenario. Results and Conclusions: The unharvested stand was aggregated at scales up to 28 m. The selective harvest accentuated the spatial patchiness of the stand in 1909 and changed spatial patterns by homogenizing tree size within patches. By 2002, the stand was a single patch dominated by small trees. Post‐harvest recruitment patterns were not spatially random; Pinus seedlings initially established in natural grass openings and then proceeded to fill‐in stump patches created by harvesting. Knowledge of spatial pattern should be explicitly incorporated into restoration activities in these forests.     

How far bowalization affects phytodiversity,life forms and plant morphology in Sub‐humid tropic in West Africa

Bowal or ferricrete, the final of land degradation, occurred only in tropical region. This study aimed at assessing the effects of bowalization on phytodiversity, life forms and morphological response of plant species using Combretum nigricans Leprieur ex Guill. & Perr. as a case study. Morphological parameters (height, number of stems, number of branches, diameter at breast height and crown diameter) of C. nigricans were determined in the sub‐humid zone of Benin. Plant communities were determined according to Multi‐Response Permutation Procedures analysis. Plant communities were more diversified on sand‐clay and concretion soils (control) compared with those described on bowal. C. nigricans developed more stems (3.6 ± 1.4 stems vs. 1.3 ± 0.4 stems), more branches (5.9 ± 2.4 branches vs. 3.2 ± 0.6 branches) and large crown diameter (5 ± 1.48 m vs. 3.4 ± 1.2 m) on bowal than on sand‐clay soil. The best adapted life forms on bowal were therophytes. Bowalization induced loss of phytodiversity, changes in species life forms and provoked local adaptation of tree species.