树鼩IL-2全长编码序列的克隆及分子特征分析

树鼩作为多种人类疾病模型已受到广泛关注,而免疫因子对于树鼩模型评价至关重要,但目前对其白细胞介素-2(IL-2)的研究鲜有报道。该实验以经ConA(concanavalin)诱导培养的树鼩淋巴细胞总RNA为模板,RT-PCR克隆出465bp的树鼩IL-2全长编码序列,并采用ClustalW软件分析其序列和分子特征。结果表明树鼩IL-2cDNA编码一个由154个氨基酸组成的蛋白质,其cDNA及氨基酸序列与人的同源性分别为93%及80%,且其整体结构与人IL-2相似。MEGA5.0软件构建的进化树表明,树鼩与人及恒河猴的亲缘关系较近。Pymol软件对树鼩和人IL-2氨基酸序列进行的三维结构模建表明,两者的IL-2分子三维空间结构基本相似,表面大部分区域所带电荷相同,但在某些区域差异较大,且树鼩多出一个糖基化位点,这些差异对抗体的结合可能存在影响。该研究为今后树鼩IL-2单克隆抗体的制备及功能研究奠定了基础。     

树鼩CD4全长编码序列的克隆及分子特征分析

树鼩作为多种人类疾病研究模型的可能性已受到广泛关注,但尚缺乏研究其免疫功能的基本标志以及单克隆抗体。该实验首先以树鼩外周血总RNA为材料,通过RT-PCR扩增得到长度为1365bp的树鼩CD4全长编码序列,并确定了数据库中缺失的两个片段,进而通过ClustalW等软件对其序列和分子特征进行分析,发现树鼩CD4氨基酸序列胞外和胞内域保守性较好,且与人类和猴的亲缘关系较近。虽然树鼩和人CD4分子表面大部分区域均带正电荷,但与人CD4胞外域D1相比,树鼩CD4D1结构区域表面带负电荷较多,且多出两个N-糖基化位点。这些差异对抗体的结合可能存在影响。该研究为今后树鼩CD4单克隆抗体制备及功能研究奠定了基础。     

树鼩CD3ε全长编码序列的克隆及分子特征分析

树鼩可作为人类疾病的良好模型,但缺乏对其免疫功能研究的基本标志和单克隆抗体。该研究应用RT-PCR技术,分别从3只树鼩的肝脏、脾脏和血液中克隆了CD3ε全长编码序列并用Discovery Studio等软件对其分子特征进行了分析。结果显示,树鼩CD3εcDNA的开放阅读框全长582bp,编码193个氨基酸。树鼩与其他哺乳动物的CD3ε蛋白整体结构近似,与人和恒河猴CD3ε的亲缘关系较近,胞内域与跨膜域高度保守,但胞外域出现2个潜在的糖基化位点,表面电荷亦存在差异。该研究为今后制备树鼩CD3单克隆抗体及功能研究奠定初步的基础。     

树鼩Retn基因的克隆及序列测定

目的 克隆树鼩(Tupaia belangeri)Retn基因,为在树鼩中开展Retn相关研究提供实验资料.方法 在树鼩脂肪组织中抽提总RNA,用RT-PCR进行基因扩增,通过基因克隆、重组质粒的酶切鉴定,对Retn克隆质粒的序列测定和分析.结果 抽提的总RNA完整性较好,RT-PCR产物电泳检测得到了目的条带,重组克...     

树鼩干扰素家族的基本构成及分子特征分析

干扰素(IFN)是在"危险信号"刺激下,由细胞分泌的具有抗病毒、抗肿瘤、抑制细胞增殖和免疫调节等多重作用的糖蛋白家族,在机体免疫系统中具有重要地位。树鼩作为多种人类疾病研究模型的前景已受到广泛关注,但对其IFN家族的研究尚属空白。该研究在现有的树鼩全基因组数据基础上,应用大片段核酸序列比对、基因预测等方法,对树鼩IFN家族的基本构成和分子特征进行预测和分析。结果显示,树鼩具有I型IFN:α(5个亚型)、β、ω、κ、ε、δ;II型IFN-γ;III型IFN:IFN-λ1、λ2/3,所编码的氨基酸序列及蛋白空间结构与其它哺乳动物具有较高的相似性,但在半胱氨酸位置和N糖基化个数上具有部分差异。该研究以全基因组数据对树鼩IFN家族信息进行系统挖掘和分析,为树鼩IFN的基因克隆以及其在感染免疫学中的作用和机理研究奠定了基础。     

树鼩细胞周期蛋白T1 cDNA的克隆和序列分析

树鼩细胞不能感染HIV-1,但支持HIV-1进入靶细胞后的转录,可能是因为树鼩细胞周期蛋白T1(tsCycT1)能结合HIV-1的Tat蛋白。通过设计引物,用RT—PCR技术,获得全长为2175bp tsCycT1基因的cDNA。其核苷酸序列与人的CycT1(hCycT1)基因的cDNA有92．6％的相似性;由此推导出的氨基酸序列有94．1％相似性。其中,hCycT1和tsCycT1氨基端的1—272个氨基酸的相似性高达98．8％,氨基酸第261位点为半胱氨酸。这些结果提示,tsCycT1会和HIV-1的Tat结合,形成高亲和的、锌依赖的复合物,支持HIV-1转录。     

臭鼩高重复顺序DNA的核苷酸顺序分析及其与树鼩TSr(Bgl Ⅱ)-1顺序的比较

将臭鼩DAN经过Bam H Ⅰ酶切得到的高重复顺序DNA最小片段重组到质粒pAT153上,转化后得到了含有臭鼩BMS(Bam H Ⅰ)-1高重复顺序DNA片段的克隆。再把此片段重组到M_(13)mp19噬菌体DNA上。用末端终止法测得全部苷酸顺序为495个碱基对。对臭鼬BMS(Bam H Ⅰ)-1片段的结构特点进行了分析,并和树鼩TSr(BglⅡ)-1高重复顺序DNA进行了比较。为确定树鼩在分类学上的地位,提供了一定的分子遗传学证据。     

树鼩CXCR4 cDNA的克隆和序列分析

目的　获得树CXCR4的cDNA序列 ,探讨其是否可以支持HIV_1病毒和细胞的结合。方法　设计相应的引物 ,用RT_PCR ,基因克隆 ,DNA序列分析技术。结果　获得了全长为 10 59bp树CXCR4(tsCXCR4)基因的cDNA。发现其核苷酸序列与人的CXCR4(hCXCR4)基因的cDNA有 92 8%的相似性 ,由此推导出的氨基酸序列有 96 9%相似性。与hCXCR4功能相关的关键位点完全相同 ,tsCXCR4的N端第 7和 12位点为酪氨酸 ,第 14、15和3 2位点为谷氨酸 ,胞外环第 183 ,188为精氨酸 ,第 193、2 62位点以及跨膜区 97位点为天冬氨酸。结论　树的CX CR4很可能会作为HIV_1的辅助受体     

树鼩神经肽Y的分子克隆及其灵长类类似物的同源性比较

树鼩由于与灵长类动物有较密切的亲缘关系和其个体小,以及繁殖周期短等特性而倍受关注,尤其是作为医用实验动物的研究,近年来已受到越来越多的重视,但树鼩的分类地位还一直有所争论。该研究从树鼩脑cDNA文库中克隆得到编码树鼩神经肽Y(neuropeptide Y,NPY)前体序列,序列比对发现该序列与灵长类NPY序列同源性高达96.9%。将该序列与GenBank数据库中其他物种的NPY序列构建系统进化树,发现树鼩与灵长类处于同一分支。该研究结果揭示了树鼩与灵长类较近的亲缘关系。     

中缅树鼩微卫星分子标记的筛选

目的 筛选中缅树鼩微卫星分子标记,逐步填补中缅树鼩特异性遗传标记的空白.方法 建立中缅树鼩基因小片段插入文库,利用5’端地高辛标记的(CA)15探针从约1500个菌落中选出36个阳性克隆.对这些克隆进行测序,发现其中15个含有重复序列,其中1个为重复克隆,1个因两端序列太短而不能设计引物.结果 用Primer3软件设计...     

Proteomic characteristics of the liver and skeletal muscle in the Chinese tree shrew (Tupaia belangeri chinensis)

Valid animal models are useful for studying the pathophysiology of specific disorders, such as neural disease, diabetes and cancer. Previous molecular phylogeny studies indicate that the tree shrew is in the same order as (or a close sister to) primates, and thus may be an ideal model in which to study human disease. In this study, the proteome of liver and muscle tissue in tree the shrew was identified by combining peptide fractionation and LC-MS/MS identification. In total, 2146 proteins were detected, including 1759 proteins in liver samples and 885 proteins in skeletal muscle samples from the tree shrew. Further sub-source analysis revealed that nearly half of the identified proteins (846 proteins and 418 proteins) were derived from human database. In this study, we are the first to describe the characteristics of the proteome from the liver and skeletal muscle of the tree shrew. Phylogenetic tree analysis based on these proteomic data showed that the tree shrew is closer to primates (human) than to glires (the mouse and rat).     

野生和人工繁育树鼩部分生理指标检测与比较

比较野生和人工繁育树鼩的部分生理指标,为人类疾病的动物模型创制提供基本参数.血液采自昆明地区54只野生树鼩(被捕获后人工饲养1-2月)和54只子一代人工繁育树鼩.该研究首次报道在两组动物中,肌酸激酶、肌钙蛋白I、总胆汁酸、果糖胺、低密度脂蛋白胆固醇等在性别间差异无显著性;这些指标在人工繁育树鼩中的中位数(四分位数间距)依次为:1449(956)U/L、5.94(7.23)μg/L、15.6(19.7)μmol/L、393.5(80.8)μmol/L和0.36(0.32)mmol/L;在野生树鼩中依次为:986(564)U/L、4.01(4.10)μg/L、20.0(20.6)μmol/L、379.0(104.0)μmol/L和0.46(0.23)mmol/L.人工繁育树鼩生理指标表现出个体间离散程度降低趋势,但个别反映肝脏功能及心肌情况的指标表现出平均值上升,个体离散程度扩大的现象.这些生理指标为人类疾病的树鼢模型创制打下了基础.     

Positively selected genes of the Chinese tree shrew (Tupaia belangeri chinensis) locomotion system

While the recent release of the Chinese tree shrew(Tupaia belangeri chinensis) genome has made the tree shrew an increasingly viable experimental animal model for biomedical research, further study of the genome may facilitate new insights into the applicability of this model. For example, though the tree shrew has a rapid rate of speed and strong jumping ability, there are limited studies on its locomotion ability. In this study we used the available Chinese tree shrew genome information and compared the evolutionary pattern of 407 locomotion system related orthologs among five mammals(human, rhesus monkey, mouse, rat and dog) and the Chinese tree shrew. Our analyses identified 29 genes with significantly high ω(Ka/Ks ratio) values and 48 amino acid sites in 14 genes showed significant evidence of positive selection in the Chinese tree shrew. Some of these positively selected genes, e.g. HOXA6(homeobox A6) and AVP(arginine vasopressin), play important roles in muscle contraction or skeletal morphogenesis. These results provide important clues in understanding the genetic bases of locomotor adaptation in the Chinese tree shrew.     

Establishment of basal cell carcinoma animal model in Chinese tree shrew (Tupaia belangeri chinensis)

Basal cell carcinoma (BCC) is the most common skin cancer worldwide,with incidence rates continuing to increase.Ultraviolet radiation is the major environmental risk factor and dysregulation of the Hedgehog (Hh) signaling pathway has been identified in most BCCs.The treatment of locally advancedand metastatic BBCs is still a challenge and requires a better animal model than the widely used rodents for drug development and testing.Chinese tree shrews (Tupaia belangeri chinensis) are closely related to primates,bearing many physiological and biochemical advantages over rodents for characterizing human diseases.Here,we successfully established a Chinese tree shrew BCC model by infecting tail skins with lentiviral SmoA1,an active form of Smoothened (Smo) used to constitutively activate the Hh signaling pathway.The pathological characteristics were verified by immunohistochemical analysis.Interestingly,BCC progress was greatly enhanced by the combined usage of lentiviral SmoA1 and shRNA targeting Chinese tree shrew p53.This work provides a useful animal model for further BCC studies and future drug discoveries.     

Characterization of 12 polymorphic microsatellite markers in the Chinese tree shrew (Tupaia belangeri chinensis)

The Chinese tree shrew (Tupaia belangeri chinensis) is a small experimental animal with a close affinity to primates. This species has long been proposed to be an alternative experimental animal to primates in biomedical research. Despite decades of study, there is no pure breed for this animal, and the overall genetic diversity of wild tree shrews remains largely unknown. In order to obtain a set of genetic markers for evaluating the genetic diversity of tree shrew wild populations and tracing the lineages in inbreeding populations, we developed 12 polymorphic microsatellite markers from the genomic DNA of the tree shrew. An analysis of a wild population of 117 individuals collected from the suburb of Kunming, China, showed that these loci exhibited a highly expected heterozygosity (0.616). These 12 microsatellites were sufficient for individual identification and parentage analysis. The microsatellite markers developed in this study will be of use in evaluating genetic diversity and lineage tracing for the tree shrew.     

树鼩脑星形胶质细胞的体外培养及纯化

本文旨在建立低等灵长类动物树鼩(Tupaia belangeri)脑星形胶质细胞(astrocyte,AS)原代培养及纯化的技术,为利用新型实验动物树鼩进行研究工作而建立体外模型。将新生树鼩大脑皮质机械分离,置于4°C冰箱20min以损伤神经元,皮质组织块用胰蛋白酶消化后制成细胞悬液,分次贴壁去除成纤维细胞,培养的混合细胞在每次换液时用0.005%胰蛋白酶轻柔漂洗去除神经元。细胞长满培养瓶底面积约70%时,用0.025%胰酶溶液静置消化,至肉眼可见一层白色薄膜从瓶底脱落时终止消化,此白色薄膜即为AS层。AS传至第三代时,用抗胶质纤维酸性蛋白(glial fibrillary acidic protein,GFAP)抗体进行免疫组织化学染色和免疫荧光染色鉴定。结果显示,本方法所得的树鼩脑AS的纯度可达98%以上。该结果提示,这种通过分次贴壁法结合差异消化的培养及纯化技术可获得高纯度的树鼩脑AS,为建立神经系统疾病新的体外细胞培养模型打下了基础。     

中国树鼩实验动物化研究进展和展望

该文回顾了我国树鼩驯养繁殖和研究的发展历史,介绍了树鼩实验动物化研究的最新进展,并结合我国目前的状况,提出了今后的工作建议:加强实验树鼩标准化(包括地方和国家标准)的研究、近交系动物的研制、达到商业化树鼩的基础分子与细胞生物学研究工具的研制、人类重大疾病树鼩动物模型研究和建设国家实验树鼩种源基地等。