Redescription of Rhodopsis pusih Bush, a little known but widely distributed species of Serpullidae (Polychaeta)

Rhodopsis pusilla Bush 1905. a minute species characterized by a chitinous opereular plate bearing numerous spines is redescribed and a neotype is designated. Apomatolos Uchida. 1978 is synonymized with Rhodopsis . Ventral fillform mouth-palps are present a rarely observed character in common with Pseudovermilia Bush. Variability between and within populations from different seas is discussed. Rhodopsis pusilla from Heron Island shows opercular dimorphism. Pouch-like brood chambers similar in texture (SEM) to the Rhodopsis tubes and integrally associated with rings marking successive position of the peristome were found on some tubes. These brood chambers. presumed to belong to Rhodopsis are described with conjectures as to their mode of formation. Some aspects of opercular polymorphism in serpulids are discussed.     

Mathematical Model of Interaction Between Bacteriocin-Producing Lactic Acid Bacteria and Listeria. Part 1: Steady States and Thresholds

Mathematical modeling is an important tool to assessing quantitative conjectures and to answer specific questions. In the modeling, we assume that a competitor represented by a lactic acid bacterium produces antimicrobial compounds (substances that kill microorganisms or inhibit their growth), such as lactic acid and bacteriocins, with some cost to its own growth. Bacteriocins are protein compounds with antimicrobial effect against related species and bacteria such as Listeria monocytogenes, which is foodborne pathogen that cause listeriosis. From the analysis of the model, we found the thresholds which determine the existence of multiple equilibria and we studied their stability, in order to evaluate the interaction between lactic acid bacteria and L. monocytogenes.     

Does quantum mechanics play a non-trivial role in life?

There have been many claims that quantum mechanics plays a key role in the origin and/or operation of biological organisms, beyond merely providing the basis for the shapes and sizes of biological molecules and their chemical affinities. These range from Schr?dinger's suggestion that quantum fluctuations produce mutations, to Hameroff and Penrose's conjecture that quantum coherence in microtubules is linked to consciousness. I review some of these claims in this paper, and discuss the serious problem of decoherence. I advance some further conjectures about quantum information processing in bio-systems. Some possible experiments are suggested.     

The language of systematics,and the philosophy of ‘total evidence’

This contribution analyses the primacy of classification over generalization, and the philosophy of total evidence that emerges from the relation of homology to character statements. Primary conjectures of homology are basic character statements, i.e. statements that predicate properties of organisms, properties that are instantiated by those organisms and/or their parts. Secondary conjectures of homology are embedded in a second‐level (metalinguistic) discourse that turns on the coherence or incoherence of those basic character statements relative to a hierarchy. The coherence or incoherence of character statements is a logical relation between statements, not a causal (historical) relation between organisms. The choice of the hypothesis of relationships that is supported by the largest set of coherent basic character statements is based on the empirical presupposition that the properties referred to by the set of coherent character statements are grounded in causally efficacious relations of inheritance and ontogeny, and co‐instantiated because they are inherited through common ancestry (Hennig's auxiliary principle). Unless that empirical presupposition is causally grounded, phylogeny reconstruction is of an inherently probabilistic nature, whether under parsimony or other models of analysis. The causal grounding of a coherent set of character statements typically seeks a link between character statements and causally efficacious generative mechanisms for morphological characters (as is defeasibly indicated by topology and connectivity), or secondary structure information for molecular characters.     

Age-specific mating strategies and reproductive senescence

While males gain obvious direct advantages from multiple mating, the reproductive capacity of females is more constrained. The reason why polyandry evolved in females is therefore open to many conjectures. One hypothesis postulates that females gain indirect benefits by increasing the probability of siring young from high quality males. To explore this hypothesis, we used the natural variation of the reproductive value that males and females undergo through age. The age-related variation of phenotypic performance might then induce variations in mating strategies in males and females. Using the common lizard (Lacerta vivipara) as our model system, we showed that reproductive immaturity and senescence created variability in both male and female reproductive success (including survival of offspring). Consistent with theory, males at their best-performing phenotype adopted a polygynous strategy. These males were of an intermediate age and they produced offspring of higher viability than younger and older males. In contrast, females at their best performing phenotype, also of an intermediate age, were less polyandrous than other less-performing females. Middle-aged females tended to mate with males of an intermediate age and produced litters with higher viability independently from their reproductive strategy. Males of an intermediate age enhanced their fitness by additional matings with young or old females. Young and old females increased their fitness by being more polyandrous. Polyandry therefore appears as means to seek for good males. A positive correlation between males and their partners' fitness disagree with the idea that polyandry is the result of a sexual conflict in this species.     

Habitat selection of coexisting competitors: a study of small mustelids in northern Norway

The coexistence of two very similar species, stoat and least weasel, has puzzled many researchers. From their ecology it is expected that they do not coexist, not locally at least, and still they seem to do. We reviewed the specific hypotheses proposed to explain their coexistence and related these to general theories of competitive coexistence. To test these conjectures, we studied the habitat selection of least weasels and stoats on landscape and on local scale. The study was performed during the winters, the most critical season, in years 1986–2001 in northern Norway. Stoats were usually more numerous than least weasels. Stoats showed preference for productive areas both at the landscape and at the habitat scale and appeared stereotypic in their habitat selection. Least weasels were more generalized and flexible in their habitat selection. Contrary to results reported in many studies, least weasel did not react to the presence of stoats and were not excluded from the areas with stoats. We suggest that in the conditions of northernmost Fennoscandia, the two species exhibit a variant of classical competitive coexistence. Both species have a shared preference for rodents, but the access to exclusive alternative prey in stoats allows their coexistence with least weasels, which are more efficient predators on rodents. We suggest that more attention should be paid on survival resources, exploited during times of low resource density, when studying the coexistence between close competitors.     

On governance in the long-term vegetation process: How to discover the rules?

Ecological practice is telling us that to identify Nature's rules, we should look for regularities in the resulting effects. Hidden rules are involved and the effects are manifested by compositional, functional, and structural transitions. This paper's focus is on two conjectures regarding the governance of specific transition compo-nents, the first supposedly under global co-ordination, and the second under superimposed site specific instability oscillations. The reality of any apparent regularity in these is the sole condition for the regularity's acceptance as a rule. Reality is testable but in retrospect only, based on time series analyses. Since long pollen spectra supply the evidence, the time period involved is measured in thousands of years. For maximal usefulness, a spectrum should have a long period length, dated horizons intensely sampled at short time steps, and precisely identified taxa. Period length and time step width matter because both may have a masking effect on the regularities. There is, of course, a natural limit for period length, which is set by the age of the pollen bearing sediments. We completed the analysis of 23 spectra using techniques deemed suitable for testing the conjectures. The spectra originated from sites in the Americas where we found suitable spectra in sufficient numbers and in geographic contiguity from the Arctic region to the Antarctic. The presented results have clear indications that the two conjectures identify real rules. The main body of the paper narrates the analyses and provides explanations. Informative materials, too voluminous for inclusion in the paper, are made available on the Internet at URL: www.vegetationdynamics.com linking to "Appen-dices Ta".     

Rational versus anti-rational interpretations of science: an ape-language case-study

Robert Nola (2003) has argued that anti-rationalist interpretations of science fail to adequately explain the process of science, since objective reasons can be causal factors in belief formation. While I agree with Nola that objective reasons can be a cause of belief, in this paper I present a version of the strong programme in the sociology of knowledge, the Interests Thesis, and argue that the Interests Thesis provides a plausible explanation of an episode in the history of ape-language research. Specifically, I examine Terrace, Petitto, Sandess, & Bever (1979, 1980) illegitimate comparison of the signing of their chimpanzee, Nim, with data from human early childhood language development, and argue that Terrace et al.'s interests played a causal role in determining their sceptical beliefs concerning ape linguistic abilities. However, I go on to argue that Terrace et al.'s interests are not the only causal factors in determining their beliefs: objective reasons, associated with the institution of new methodologies, were also causally determinative of Terrace et al.'s sceptical beliefs. Consequently, I argue that belief formation in science is a multi-factorial affair wherein both interests and objective reasons have causal roles. I finish the paper with two conjectures concerning the proper locus of scientific rationality.     

On governance in the long-term vegetation process: How to discover the rules?

Ecological practice is telling us that to identify Nature’s rules, we should look for regularities in the resulting effects. Hidden rules are involved and the effects are manifested by compositional, functional, and structural transitions. This paper’s focus is on two conjectures regarding the governance of specific transition components, the first supposedly under global co-ordination, and the second under superimposed site specific instability oscillations. The reality of any apparent regularity in these is the sole condition for the regularity’s acceptance as a rule. Reality is testable but in retrospect only, based on time series analyses. Since long pollen spectra supply the evidence, the time period involved is measured in thousands of years. For maximal usefulness, a spectrum should have a long period length, dated horizons intensely sampled at short time steps, and precisely identified taxa. Period length and time step width matter because both may have a masking effect on the regularities. There is, of course, a natural limit for period length, which is set by the age of the pollen bearing sediments. We completed the analysis of 23 spectra using techniques deemed suitable for testing the conjectures. The spectra originated from sites in the Americas where we found suitable spectra in sufficient numbers and in geographic contiguity from the Arctic region to the Antarctic. The presented results have clear indications that the two conjectures identify real rules. The main body of the paper narrates the analyses and provides explanations. Informative materials, too voluminous for inclusion in the paper, are made available on the Internet at URL: www.vegetationdynamics.com linking to “Appendices Ta”.     

A Markov chain occurring in enzyme kinetics

A certain Markov chain which was encountered by T. L. Hill in the study of the kinetics of a linear array of enzymes is studied. An explicit formula for the steady state probabilities is given and some conjectures raised by T. L. Hill are proved.     

Layer-dependent role of collagen recruitment during loading of the rat bladder wall

In this work, we re-evaluated long-standing conjectures as to the source of the exceptionally large compliance of the bladder wall. Whereas these conjectures were based on indirect measures of loading mechanisms, in this work we take advantage of advances in bioimaging to directly assess collagen fibers and wall architecture during biaxial loading. A custom biaxial mechanical testing system compatible with multiphoton microscopy was used to directly measure the layer-dependent collagen fiber recruitment in bladder tissue from 9 male Fischer rats (4 adult and 5 aged). As for other soft tissues, the bladder loading curve was exponential in shape and could be divided into toe, transition and high stress regimes. The relationship between collagen recruitment and loading curves was evaluated in the context of the inner (lamina propria) and outer (detrusor smooth muscle) layers. The large extensibility of the bladder was found to be possible due to folds in the wall (rugae) that provide a mechanism for low resistance flattening without any discernible recruitment of collagen fibers throughout the toe regime. For more extensible bladders, as the loading extended into the transition regime, a gradual coordinated recruitment of collagen fibers between the lamina propria layer and detrusor smooth muscle layer was found. A second important finding was that wall extensibility could be lost by premature recruitment of collagen in the outer wall that cut short the toe region. This change was correlated with age. This work provides, for the first time, a mechanistic understanding of the role of collagen recruitment in determining bladder extensibility and capacitance.     

The role of theology in current evolutionary reasoning

A remarkable but little studied aspect of current evolutionary theory is the use by many biologists and philosophers of theological arguments for evolution. These can be classed under two heads: imperfection arguments, in which some organic design is held to be inconsistent with God's perfection and wisdom, and homology arguments, in which some pattern of similarity is held to be inconsistent with God's freedom as an artificer. Evolutionists have long contended that the organic world falls short of what one might expect from an omnipotent and benevolent creator. Yet many of the same scientists who argue theologically for evolution are committed to the philosophical doctrine of methodological naturalism, which maintains that theology has no place in science. Furthermore, the arguments themselves are problematical, employing concepts that cannot perform the work required of them, or resting on unsupported conjectures about suboptimality. Evolutionary theorists should reconsider both the arguments and the influence of Darwinian theological metaphysics on their understanding of evolution.     

相互干扰的捕食与被捕食者种群的Hassall模型定性分析

本文证明了Hassall模型的渐近稳定性、有界性、全局稳定性。解决了文献[1]对该模型的三个猜想：（1）模型在某种条件下,正平衡点（x^*,y^*）是渐近稳定的;（2）模型的一切正初始条件的解有界;（3）模型在一定条件下,正平衡点（x^*,y^*）是全局稳定的。     

On some models of fertility selection

Additive, multiplicative and symmetric models of fertility controlled by one diallelic gene are studied. For the completely symmetric fertility system a complete equilibrium and local stability analysis is possible. Contrary to previous conjectures, asymmetric equilibria can be stable. Conditions are derived under which a multiplicative model can be regarded as equivalent to a symmetric fertility system.     

Properties of the nearest neighbor interchange metric for trees of small size

The crossover or nearest neighbor interchange metric has been proposed for use in numerical taxonomy to obtain a quantitative measure of distance between classifications that are modeled as unrooted binary trees with labeled leaves. This metric seems difficult to compute and its properties are poorly understood. A variant called the closest partition distance measure has also been proposed, but no efficient algorithm for its computation has yet appeared and its relationship to the nearest neighbor interchange metric is incompletely understood. I investigate four conjectures concerning the nearest neighbor interchange and closest partition distance measures and establish their validity for trees with as many as seven labeled vertices. For trees in this size range the two distance measures are identical. If a certain decomposition property holds for the nearest neighbor interchange metric, then the two distance measures are also identical at small distances for trees of any size.     

Traveling Wave Solutions of a Nerve Conduction Equation

We consider a pair of differential equations whose solutions exhibit the qualitative properties of nerve conduction, yet which are simple enough to be solved exactly and explicitly. The equations are of the FitzHugh-Nagumo type, with a piecewise linear nonlinearity, and they contain two parameters. All the pulse and periodic solutions, and their propagation speeds, are found for these equations, and the stability of the solutions is analyzed. For certain parameter values, there are two different pulse-shaped waves with different propagation speeds. The slower pulse is shown to be unstable and the faster one to be stable, confirming conjectures which have been made before for other nerve conduction equations. Two periodic waves, representing trains of propagated impulses, are also found for each period greater than some minimum which depends on the parameters. The slower train is unstable and the faster one is usually stable, although in some cases both are unstable.     

Membrane transporters as machines: degenerate singularities as a requirement for function

It is suggested that Membrane Transporter functionality is based on low energy paths between proteins of different conformations. A simple extension of the Born-Oppenheimer approximation is used to reduce the protein structure problem to one of the kinematics of engineering mechanisms. Such low energy paths between conformations with the same handedness imply the existence of degenerate singularities in the engineering mechanism. The requirement for degeneracy leads to a number of conjectures. These include the structure and function of chaperones for constructing such proteins and the thermodynamic properties of membrane transporters.     

The braincases of mosasaurs and Varanus, and the relationships of snakes

The braincase structure of the mosasaur Platecarpus is described in detail and compared to that of Varanus and snakes. The braincase of mosasaurs and Varanus is found to be closely similar in most respects other than the consequences of obliteration of the metakinetic axis in mosasaurs. Neither Varanus, nor mosasaurs, approach snakes in braincase structure. The hypothesis of a sister-group relationship of snakes and mosasauroids is discussed in the light of how hypotheses of homology, or synapomorphy, can be established on an empirical, i.e. testable and potentially falsifiable basis. The establishment of homology qua synapomorphy is recognized as a procedure involving at least two levels of generalization. The most basic level is the conjecture of similarity of constituent elements of two or more organisms. Such conjectures of similarity maintain their testability, and falsifiability, only if established by reference to topographical equivalence, or equivalence of connectivity.     

Chromatin fiber structure: Where is the problem now?

The structure of the "30 nm chromatin fiber", as observed in vitro, has been a matter of controversy for 30 years. Recent studies with new and more powerful techniques give some promise for resolution. However, this will not necessarily inform us as to the in vivo structure, which may be both heteromorphic and dynamic. In this chapter, we briefly review the older conjectures and some more recent studies of special interest. We attempt to point out the remaining contradictions and hopeful lines of future research.     

The Correlated Bivariate Inverted Beta Distribution

The correlated bivariate inverted beta distribution is constructed from the bivariate mixture of two independent gamma random variables whose scale parameters follow Kibble's correlated gamma distribution. Explicit expressions have been derived for the form of the joint probability density function, the joint cumulative distributive function and other statistical properties of interest. These results confirm and extend some of the conjectures of HUTCHINSON in connection with generalizations of probabilistic models of severity distribution arising from injuries sustained in two-vehicle head on collison.