Potential distribution of Mexican primates: modeling the ecological niche with the maximum entropy algorithm

We developed a potential distribution model for the tropical rain forest species of primates of southern Mexico: the black howler monkey (Alouatta pigra), the mantled howler monkey (Alouatta palliata), and the spider monkey (Ateles geoffroyi). To do so, we applied the maximum entropy algorithm from the ecological niche modeling program MaxEnt. For each species, we used occurrence records from scientific collections, and published and unpublished sources, and we also used the 19 environmental coverage variables related to precipitation and temperature from WorldClim to develop the models. The predicted distribution of A. pigra was strongly associated with the mean temperature of the warmest quarter (23.6%), whereas the potential distributions of A. palliata and A. geoffroyi were strongly associated with precipitation during the coldest quarter (52.2 and 34.3% respectively). The potential distribution of A. geoffroyi is broader than that of the Alouatta spp. The areas with the greatest probability of presence of A. pigra and A. palliata are strongly associated with riparian vegetation, whereas the presence of A. geoffroyi is more strongly associated with the presence of rain forest. Our most significant contribution is the identification of areas with a high probability of the presence of these primate species, which is information that can be applied to planning future studies and then establishing criteria for the creation of areas to primate conservation in Mexico.     

Record error and range contraction, real and imagined, in the restricted shrub Banksia hookeriana in south-western Australia

Banksia hookeriana Meissn. (Proteaceae) is a fire‐killed shrub endemic to the northern sandplains of south‐western Australia that could be described as endangered based on its small geographical range (< 5000 km²) and area of occupancy (～500 km²). Impacts on the species’ geographical range by land clearance for farming and mining, and by altered fire regime, were investigated using three lines of evidence: records of herbarium collections, a comprehensive field survey of extant populations, and air photo and satellite images revealing the recent history of land clearance and fires. These show that the species’ range has contracted by up to 40% in area and 26% latitudinally through the loss of outlier and range limit populations since 1960. In addition, 22% of remaining native shrubland on the Eneabba sandplain has been lost over this period through clearing for farming and mining, representing further habitat loss for B. hookeriana. Detailed investigation of B. hookeriana herbarium collections (n = 46) revealed important errors that artificially affected the geographical range of the species and emphasized the importance of close examination of all data captured from collection records. Recorded locations occurred hundreds of kilometres outside the current geographical range of the species in areas with different climate and substrate. Incorrect species identification of herbarium specimens further extended the apparent geographical range of the species. On the other hand, credible records indicated the loss of the species from localities at the limits of its range. Overall, a disconcertingly high proportion of records contained errors that may be difficult to identify without close examination of the original collections and detailed ground‐truthing. Were these records to be used to model climate envelopes, identify potential habitat where the species might occur, or might migrate to either as pests or under climate change scenarios, or to analyse evolutionary or ecological theory (for example) — as is now becoming commonplace — large errors may ensue.     

On the occurrence of the Medicinal Leech,Hirudo medicinalis L., in the Levant

Abstract

Historical records of H. medicinalis are reviewed and specimens have been identified from recent collections of leeches in northern Israel, confirming that this species has not disappeared from our area.     

The bryophyte collections of Wabash College Herbarium (WAB) now at the New York Botanical Garden (NY)

The bryophyte portion of the Wabash College Herbarium (WAB) consists of the personal herbaria of two faculty members: Drs. R. L. Laubengayer and A. R. Bechtel. Together, there were 1483 packets of bryophyte specimens. Most of the collections are from New York, Indiana, and Puerto Rico. Among them, ten represent new county records for New York mosses.Pseudocrossidium aureum is reported as new to California.Orthotrichum sordidum andPylaisiella selwynii are newly identified from a Puerto Rican collection by Laubengayer. The West Indian records of these two species, however, are only doubtfully accepted. In addition, a short biographical sketch is presented for R. L. Laubengayer.     

Hogfish Lachnolaimus maximus (Labridae) confirmed in the south‐western Atlantic Ocean

Based on material deposited in collections, photographic records and other reports from fishermen and divers, the occurrence of the hogfish Lachnolaimus maximus (Labridae) is confirmed in the south‐western Atlantic Ocean, near the Brazilian coast as far south as southern Brazil. The recognized range of this species should therefore be extended c. 3000 km further south.     

广西植物新资料

广西涠洲岛是中国第一大火山岛,现为国家级海洋公园。经过两次的实地调查,采集到标本共348号。整理后发现:2个新记录属,即细穗草属(Lepturus)和蒭雷草属(Thuarea);6个新记录种,即疏花木蓝(Indigofera colutea)、滨豇豆(Vigna marina)、留萼木(Blachia pentzii)、滨海白绒草(Leucas chinensis)、细穗草(Lepturus repens)、蒭雷草(Thuarea involuta)。这些都是适应沿海生境的种类。这些新记录种的发现不仅丰富了广西的植物多样性资料,而且为沿海地区的生态修复提供了参考。     

European pome fruit genetic resources evaluated for disease resistance

Pome fruit genetic resources collections constitute a highly valuable resource not only for fruit breeding but also for direct use by nurseries, growers, and home gardeners. In order to use these resources efficiently and sustainably, reliable evaluation data on fruit and tree characteristics must be generated. Here we focus on pome fruit genetic resources evaluated phenotypically and genotypically for susceptibility to apple scab (Venturia inaequalis), powdery mildew (Podosphaera leucotricha), fire blight (Erwinia amylovora), pear rust (Gymnosporangium sabinae) and storage diseases (e.g., Penicillium expansum). Examples are presented of several ongoing projects throughout Europe, with the aim to evaluate fruit genetic resources for disease susceptibility and potential use in breeding and for commercial use. The COST action 864 has fostered international cooperation in the evaluation of pome fruit genetic resources, and some of these evaluations therefore involve research groups from several of the participating countries.     

The Known Distribution and Ecological Preferences of the Tick Subgenus Boophilus (Acari: Ixodidae) in Africa and Latin America

A compilation of the known distribution of Boophilus ticks in Africa and Latin America is presented, together with details on climate preferences. B. annulatus is recorded mainly in the western part of a strip from the equator to parallel 20° N. It associates with woodlands and forests (lowland rain forest and secondary grassland). This species is also present in the Mediterranean region, associated to woodland and open areas. B. decoloratus extends southern to parallel 20° N, in woodland with montane vegetation and Zambezian miombo; some records have been collected in the highveld grassland. B. geigyi is mainly collected in the western range of a stripe extending between parallels 5° N and 18° N, associated with Sudanian woodland, lowland rain forest with secondary grassland and woodland. Confirmed records of microplus in Africa are restricted to Malagasy region and south and eastern Africa, being predominant in the Zambezian miombo, deciduous forest with secondary grassland, and woodland. In Latin America, microplus is abundant in the Mesoamerican corridor to Venezuela and Colombia, and southern in Brazil and Argentina. The tick is mainly associated to the biomes of Chaco and Pampas in Argentina, the North-central moist Andes, the Atlantic forest (southern range) and the moist Meso-American vegetation (northern range). Most collections of B. annulatus and B. geigyi came from areas where winter minimum temperature is above 15 °C, maximum temperatures remain between 33 and 36 °C and maximum rainfall is recorded between June and September. B. decoloratus and African B. microplus are recorded in sites with low temperatures in May–September. Minimum temperature requirements are similar for both B. decoloratus and African B. microplus, and both are around 4 °C less than the value recorded for collections of Latin-American B. microplus. The rainfall pattern observed for decoloratus shows a minimum in May and June. The requirements of total rainfall are highest for B. microplus in Latin America, while records of African B. microplus are concentrated in areas of low rainfall between May and October, and high rainfall between November and March (low rainfall in the same period for B. decoloratus). Statistical analysis revealed the existence of populations (demes) with ecologically different requirements within each tick species. Both B. annulatus and B. decoloratus showed many different demes clearly associated to defined areas. The collections of Latin American B. microplus are very homogeneous according climate preferences and well separated from the African counterpart.     

Contributions to the Cladocera fauna from Papua New Guinea

Twenty-eight taxa of the Cladocera are identified in collections from Papua New Guinea, 17 being new records for New Guinea, bringing the total number of Cladocera taxa reported for this region to 39. Most of the taxa are circumtropical. One species (Sarsilatona papuana) is endemic to Papua New Guinea and northern Australia. The species list includes two species that are normally listed as Holarctic:Alonella nana andAlona rustica. Widespread genera such asDaphnia, Pleuroxus, Disparalona, Acroperus were strikingly absent from the Papua New Guinean material.     

Metabolite database for root,tuber, and banana crops to facilitate modern breeding in understudied crops

Roots, tubers, and bananas (RTB) are vital staples for food security in the world's poorest nations. A major constraint to current RTB breeding programmes is limited knowledge on the available diversity due to lack of efficient germplasm characterization and structure. In recent years large‐scale efforts have begun to elucidate the genetic and phenotypic diversity of germplasm collections and populations and, yet, biochemical measurements have often been overlooked despite metabolite composition being directly associated with agronomic and consumer traits. Here we present a compound database and concentration range for metabolites detected in the major RTB crops: banana (Musa spp.), cassava (Manihot esculenta), potato (Solanum tuberosum), sweet potato (Ipomoea batatas), and yam (Dioscorea spp.), following metabolomics‐based diversity screening of global collections held within the CGIAR institutes. The dataset including 711 chemical features provides a valuable resource regarding the comparative biochemical composition of each RTB crop and highlights the potential diversity available for incorporation into crop improvement programmes. Particularly, the tropical crops cassava, sweet potato and banana displayed more complex compositional metabolite profiles with representations of up to 22 chemical classes (unknowns excluded) than that of potato, for which only metabolites from 10 chemical classes were detected. Additionally, over 20% of biochemical signatures remained unidentified for every crop analyzed. Integration of metabolomics with the on‐going genomic and phenotypic studies will enhance ’omics‐wide associations of molecular signatures with agronomic and consumer traits via easily quantifiable biochemical markers to aid gene discovery and functional characterization.     

Chromosome numbers in Compositae. XVIII.

Chromosome numbers and other cytogenetic data were determined from microsporocytes in 316 collections including 13 tribes of Compositae, mostly from Africa, Australia, Mexico, Central America, and South America. First reports are provided for 66 species and the genera Cassinia (2n ≈ 14_II), Feldstonia (2n = 11_II), Gochnatia (2n ≈ 23_II), and Pseudoconyza (n = 10). In addition, new chromosome numbers are established at the generic level in Acourtia, Calea, Craspedia, Gnaphalium, Helipterum, Liabum, Leucheria, Smallanthus, Trixis, and Viguiera and at the specific level in 13 additional species.     

First record of albinism in the lanternshark family,Etmopteridae

A single albino specimen of the lanternshark, Lucifer's dogfish (Etmopterus lucifer), is reported here. The specimen was found among museum collections, having been captured near Cape Palliser, off the North Island of New Zealand in 1984. Morphometrics are reported, and with no retainment of pigmentation, the specimen is considered a complete albino. This is the first record of albinism for the family Etmopteridae and one of a handful of records for any deep-sea chondrichthyans.     

OBSERVATIONS OF CHROMOSOMES IN CIRCAEA (ONAGRACEAE)

Observations of meiotic and/or mitotic chromosomes for 16 specific, infraspecific, and hybrid taxa from 56 populations are presented; chromosome numbers for 11 taxa are reported for the first time. All samples reported have 2n = 22, with the exception that 3 of 12 collections of C. × intermedia have at least some individuals that are triploid. North American diploid collections of this hybrid are heterozygous for one reciprocal translocation; only 1 of 5 European diploid collections also exhibited a translocation. Meiosis in four naturally occurring Asian hybrids is also analyzed: C. × ovata (C. cordata × C. mollis), C. × decipiens (C. erubescens × C. lutetiana) and C. x× dubia (C. cordata × C. eurbescens) possess a single translocation; C. × mentiens (C. alpina × C. eurbescens) is structurally homozygous. With the exception of the translocation, chromosome pairing in these hybrids is normal. Early diakinesis chromosomes possess densely staining centric regions and diffusely staining arms that are subequal in length.     

Complete mitochondrial genomes of eleven extinct or possibly extinct bird species

Natural history museum collections represent a vast source of ancient and historical DNA samples from extinct taxa that can be utilized by high‐throughput sequencing tools to reveal novel genetic and phylogenetic information about them. Here, we report on the successful sequencing of complete mitochondrial genome sequences (mitogenomes) from eleven extinct bird species, using de novo assembly of short sequences derived from toepad samples of degraded DNA from museum specimens. For two species (the Passenger Pigeon Ectopistes migratorius and the South Island Piopio Turnagra capensis), whole mitogenomes were already available from recent studies, whereas for five others (the Great Auk Pinguinis impennis, the Imperial Woodpecker Campehilus imperialis, the Huia Heteralocha acutirostris, the Kauai Oo Moho braccathus and the South Island Kokako Callaeas cinereus), there were partial mitochondrial sequences available for comparison. For all seven species, we found sequence similarities of >98%. For the remaining four species (the Kamao Myadestes myadestinus, the Paradise Parrot Psephotellus pulcherrimus, the Ou Psittirostra psittacea and the Lesser Akialoa Akialoa obscura), there was no sequence information available for comparison, so we conducted blast searches and phylogenetic analyses to determine their phylogenetic positions and identify their closest extant relatives. These mitogenomes will be valuable for future analyses of avian phylogenetics and illustrate the importance of museum collections as repositories for genomics resources.     

A karyomorphological study of the genusHypericum (Hypericaceae) in Japan

Chromosome numbers were determined in 226 collections ofHypericum of Japan, representing nine species and one interspecific hybrid. These included the first cytological records forH. erectum var.caespitosum, H. samaniense, H. hakonense, H. sikokumontanum, H. kamtschaticum var.kamtschaticum, H. kamtschaticum var.hondoense, H. pseudopetiolatum, H. yojiroanum andH. tosaense. Counts of 2n=16 were made throughout for collections of six species, and those of 2n=18 forH. ascyron. Intraspecific polyploidy was found inH. samaniense (2x and 3x, x=8) andH. pseudopetiolatum (2x and 4x, x=8). Results of the karyotype analysis showed that three different karyotypes could be recognized, and they were parallel to the subdivision ofHypericum by Kimura (1951). The chromosomes were very small and mostly median centromeric. It was suggested that the role of polyploidy in the evolutionary differentiation ofHypericum in Japan might have been rather limited.     

Diacheopsis metallica and Diacheopsis kowalskii: comparison of two distinct myxomycete species

The only microscopic slide of Diacheopsis metallica studied by Charles Meylan conserved in Lausanne was examined, and a neotype was proposed for this species. Diacheopsis metallica is compared with other European and American collections and with Diacheopsis kowalskii. Both species are considered distinct due to differences in spore size and morphology of the capillitium. Light microscope and scanning electron microscope photographs of D. metallica and D. kowalskii are presented; the species are new records for Spain.     

Plant collecting spread and densities: their potential impact on biogeographical studies in Thailand

Aims To produce representative aggregate maps of plant collection locations in Thailand and discuss their impact on biogeographical studies in Thailand and the surrounding region. Location Thailand. Methods A representative data set comprising 6593 plant specimen records for Thailand has been assembled. The data set contains ± all known collections for fifteen representative plant families and further records for another 104. All records are localized to Changwat (province), 6441 to at least quarter degree square. Results Analysis shows that the spread of collecting activity in Thailand is markedly uneven; 20% of collections come from a single Changwat (Chiang Mai) and 53% of Changwat have fifty or fewer collections. The distribution of collections by Changwat and by quarter degree square is erratic with most squares and Changwat having few collections, both in proportionate and absolute terms. Some of the most densely forested Changwats and squares appear undercollected. Distribution maps for common, easily recognized tree species in the genus Syzygium show distributional gaps. Conclusions Thailand is defined as an undercollected country. Even within the few well‐collected quarter degree squares the spread of collecting is still poor; almost all collections being localized to one of three mountain ranges or their foothills. There are many gaps in collecting activity which make impossible a straightforward interpretation of biogeographical pattern. It is argued that targeted collecting activity is needed, that assembly of this type of data set is therefore essential and that our data set and its interpretation is a model for all countries in the region.     

The history of the Portulaca oleracea aggregate in the Emilia-Romagna Po Plain (Italy) from the Roman Age to the present

Portulaca oleracea L. is a cosmopolitan synanthropic species, of uncertain origin, known in Italy since the Roman Age. The aim of this work is to reconstruct the history of P. oleracea aggregate in the Emilia-Romagna Po Plain, by discovering the microspecies that have lived in this region. A qualitative study was carried out to determine the microspecies documented in the archaeological sites of Emilia-Romagna, from the Roman to Medieval/Renaissance periods. A comparison between archaeological seeds and recent and present records was made by sampling in historical herbaria and field collections. Seven different microspecies were identified: Portulaca papillatostellulata, P. trituberculata, P. cypria, P. sativa, P. oleracea (all hexaploid); P. granulatostellulata and P. nitida (both tetraploid = 4x). They are distinguished on the basis of seed coat morphology. The findings in archaeological sites and in the present collections are discussed. Two independent events of European colonization could be proposed: First to arrive were the hexaploid (6x) species, followed by the tetraploid species. In future, the application of similar analyses to the well-preserved archaeobotanical remains of purslane, particularly the microspecies from America, could be a good way to understand the history of this interesting species aggregate from a chronological and geographical standpoint.