New species of the genus <Emphasis Type="Italic">Petrorossia</Emphasis> Bezzi (Diptera,Bombyliidae) from Senegal and Chad

Two new species are described from specimens of Paul du Merle’s collection deposited in the Musée national d’histoire naturelle, Paris: Petrorossia gruveli sp. n. (Chad) and P. senegalensis sp. n. (Senegal).     

New species of the genus Chalcochiton Loew (Diptera, Bombyliidae) from Spain and Morocco

Three new species of the genus Chalcochiton Loew (Ch. maroccanus sp. n. and Ch. merlei sp. n. from Morocco and Ch. hispanicus sp. n. from Spain) are described from specimens in the collection of P. du Merle, a well-known French entomologist.     

New afrotropical species of the Bombyliid genus <Emphasis Type="Italic">Petrorossia</Emphasis> Bezzi (Diptera,Bombyliidae)

Two new species are described from Paul du Merle collection in the National Museum of Natural History in Paris, Petrorossia cameruni sp. n. from Cameroon and Petrorossia chadi sp. n. from Chad and Came     

Retrotransposon Mys was active during evolution of the Peromyscus leucopus-maniculatus complex

Mys is a retrovirus-like transposable element found throughout the genus Peromyscus. Several mys subfamilies identified on the basis of restriction site variation occur in more than one species. The distribution of these subfamilies is consistent with the accepted species phylogeny, suggesting that mys was present in the ancestor of Peromyscus and has been active through much of the evolution of this genus. Quantitative Southern blot analysis was used to examine the variability of subfamilies in P. leucopus and maniculatus. We found that subfamilies with phylogenetically narrow distributions were more variable in copy number both within and between species than subfamilies with a broader distribution. Taken together, our data suggest that mys has undergone multiple rounds of transposition since the peromyscine radiation, and that five subfamilies have been amplified during the evolution of the leucopus-maniculatus species complex. Correspondence to: H.A. Wichman     

Comparative analysis of the small heat shock proteins in three angiosperm genomes identifies new subfamilies and reveals diverse evolutionary patterns

The small heat shock proteins (sHSPs) are a diverse family of molecular chaperones. It is well established that these proteins are crucial components of the plant heat shock response. They also have important roles in other stress responses and in normal development. We have conducted a comparative sequence analysis of the sHSPs in three complete angiosperms genomes: Arabidopsis thaliana, Populus trichocarpa, and Oryza sativa. Our phylogenetic analysis has identified four additional plant sHSP subfamilies and thus has increased the number of plant sHSP subfamilies from 7 to 11. We have also identified a number of novel sHSP genes in each genome that lack close homologs in other genomes. Using publicly available gene expression data and predicted secondary structures, we have determined that the sHSPs in plants are far more diverse in sequence, expression profile, and in structure than had been previously known. Some of the newly identified subfamilies are not stress regulated, may not posses the highly conserved large oligomer structure, and may not even function as molecular chaperones. We found no consistent evolutionary patterns across the three species studied. For example, gene conversion was found among the sHSPs in O. sativa but not in A. thaliana or P. trichocarpa. Among the three species, P. trichocarpa had the most sHSPs. This was due to an expansion of the cytosolic I sHSPs that was not seen in the other two species. Our analysis indicates that the sHSPs are a dynamic protein family in angiosperms with unexpected levels of diversity. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Two distinct P element subfamilies in the genome of Drosophila bifasciata

The genome of Drosophila bifasciata harbours two distinct subfamilies of P-homologous sequences, designated M-type and O-type elements based on similarities to P element sequences from other species. Both subfamilies have some general features in common: they are of similar length (M-type: 2935 bp, O-type: 2986 bp), are flanked by direct repeats of 8 by (the presumptive target sequence), contain terminal inverted repeats, and have a coding region consisting of four exons. The splice sites are at homologous positions and the exons have the coding capacity for proteins of 753 amino acids (M-type) and 757 amino acids (O-type). It seems likely that both types of element represent functional transposons. The nucleotide divergence of the two P element subfamilies is high (31%). The main structural difference is observed in the terminal inverted repeats. Whereas the termini of M-type elements consist of 31 by inverted repeats, the inverted repeats of the O-type elements are interrupted by non-complementary stretches of DNA, 12 by at the 5′ end and 14 by at the 3′ end. This peculiarity is shared by all members of the O-type subfamily. Comparison with other P element sequences indicates incongruities between the phylogenies of the species and the P transposons. M-type and O-type elements apparently have no common origin in the D. bifasciata lineage. The M-type sequence seems to be most closely related to the P element from Scaptomyza pallida and thus could be considered as a more recent invader of the D. bifasciata gene pool. The origin of the O-type elements cannot be unequivocally deduced from the present data. The sequence comparison also provides new insights into conserved domains with possible implications for the function of P transposons.     

Diversity and distribution of CYP gene family in Bactrian camel

Cytochrome P450 (CYP) enzymes belong to a superfamily of monooxygenases which are phase I enzymes responsible for the first pass metabolism of about 90% of drugs in animals. However, these enzymes are often polymorphic and metabolism of the same drug in different species or different individuals is influenced by genetic and non-genetic factors. Bactrian camels are capable of survival in harsh living environments, being able to consume diets that are often toxic to other mammals and can tolerate extreme water and food deprivation. The aim of this study was to investigate whether the Bactrian camel’s special metabolic pathways and unique detoxification capabilities are attributable to particularities of the CYP gene family. The Bactrian camel’s whole genome sequencing data were systemically analyzed and annotated, and then, CYP gene family was searched from the whole protein database and compared with CYP gene families of cattle, horse, chicken, and human. The total of 63 CYP gene copies were found in Bactrian camel’s whole genome and were classified into 17 families and 38 subfamilies. Among them, 9 multi-gene families were found, and CYP2, CYP3, and CPY4 have 27, 6, and 7 subfamilies, accounting for 43, 10, and 11% in camel CYP gene, respectively. In comparison with cattle, chicken, horse, and human, the distribution of CYP gene subfamilies in camel is different, with more CYP2J and CYP3A copies in the Bactrian camel, which may contribute to the Bactrian camel’s specific biological characteristics and metabolic pathways. Comparing to the cow, horse, chicken, and human CYP genes, the distribution of CYP gene subfamilies is distinct in the Bactrian camel. The higher copy number of CYP2J gene and CYP3A gene in Bactrian camel may be the important factors contributing to the distinct biological characteristics and metabolic pathways of Bactrian camels for adaptation to the harsh environments.     

The higher classification of the ant subfamily Leptanillinae (Hymenoptera: Formicidae)

Abstract. Until now the ant subfamily Leptanillinae has been closely linked with the army ant subfamilies Dorylinae and Ecitoninae, but on relatively tenuous evidence. The current phylogenetic study strongly indicates that this view is incorrect and that the leptanillines really constitute the sister-group of subfamily Ponerinae, and are at a consider- ably greater taxonomic distance from the Army Ant subfamilies. Three tribes are now recognized within the Leptanillinae (Leptanillini; Anomalornyrmini, new tribe; and Apomyrmini, transferred here from Ponerinae: Arnblyoponini), containing a total of eight genera with fewer than fifty species in all. The subfamily and its component tribes are diagnosed and discussed here, and a key to genera provided. New taxa described include Anomalomyrma Taylor gen.n., type-species A. taylori Bolton sp.n. and Protanilla Taylor gen.n., type-species P. rafflesi Taylor sp.n.     

Contributions to the faunistics and bionomics of Staphylinidae (Coleoptera) in northeastern North America: discoveries made through study of the University of Guelph Insect Collection, Ontario, Canada

Staphylinidae (Rove Beetles) from northeastern North America deposited in the University of Guelph Insect Collection (Ontario, Canada) were curated from 2008-2010 by the first author. The identification of this material has resulted in the recognition of thirty-five new provincial or state records, six new Canadian records, one new record for the United States and two new records for eastern Canada. All records are for subfamilies other than Aleocharinae and Pselaphinae, which will be treated in future publications as collaborative projects. Range expansions of ten exotic species to additional provinces and states are reported. The known distributions of each species in northeastern North America are summarized and presented as maps, and those species with a distinctive habitus are illustrated with color photographs. Genitalia and/or secondary sexual characters are illustrated for those species currently only identifiable on the basis of dissected males. The majority of the new records are in groups that have been recently revised, demonstrating the importance of curation and local insect surveys to the understanding of biodiversity, even for taxa and areas considered 'relatively well-known'.     

Novel approach for structural identification of protein family: glyoxalase I

Glyoxalase is one of two enzymes of the glyoxalase detoxification system against methylglyoxal and other aldehydes, the metabolites derived from glycolysis. The glyoxalase system is found almost in all living organisms: bacteria, protozoa, plants, and animals, including humans, and is related to the class of ‘life essential proteins’. The enzyme belongs to the expanded Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. At present the GenBank contains about 700 of amino acid sequences of this enzyme type, and the Protein Data Bank includes dozens of spatial structures. We have offered a novel approach for structural identification of glyoxalase I protein family, which is based on the selecting of basic representative proteins with known structures. On this basis, six new subfamilies of these enzymes have been derived. Most populated subfamilies A1 and A2 were based on representative human Homo sapiens and bacterial Escherichia coli enzymes. We have found that the principle feature, which defines the subfamilies’ structural differences, is conditioned by arrangement of N- and C-domains inside the protein monomer. Finely, we have deduced the structural classification for the glyoxalase I and assigned about 460 protein sequences distributed among six new subfamilies. Structural similarities and specific differences of all the subfamilies have been presented. This approach can be used for structural identification of thousands of the so-called hypothetical proteins with the known PDB structures allowing to identify many of already existing atomic coordinate entrees.     

Carboniferous bryozoans of the order Rhabdomesida of the East European Platform

This paper deals with the revision of Carboniferous bryozoans of the order Rhabdomesida from the East European Platform. Based on evolutionary and morphological analysis and on astogenetic method, the criteria of classification are refined and the taxonomic system of Carboniferous rhabdomesids of this region is studied in more detail. The history of studying rhabdomesids, their taphonomy and paleoecology, morphology and classification, and the dynamics of the diversity and phylogenetic relationships of rhabdomesid genera and species are discussed. A phenomenon of polymerization in the development of the subfamily Ascoporinae Gorjunova subfam. nov. has been discovered for the first time. Sixty-eight rhabdomesid species (31 new), 24 genera (8 new), belonging to six subfamilies (one new), eight familie, and three suborders are described.     

Aeolid opisthobranch molluscs (Glaucidae) from the Indian Ocean and the south-west Pacific

Eight aeolid opisthobranch molluscs of the subfamilies Facelininae, Favorininae, and Herviellinae are reported from Tanzanian waters, and two species from Northwestern India. New records from Queensland, Australia greatly extend the range of two species reported from Tanzania. Phidiana militaris (Alder & Hancock) and P. indica (Bergh) are shown to be distinct and a species from New Zealand, originally identified as P. militaris , is shown to be new. P. bourailli (Risbec), previously reported only from New Caledonia, is described from Tanzania, as is a new species of Phidiana. Favorinus japonicus Baba is reported from Tanzania, the first published record outside Japan, a new species of Godiva is described from Tanzania and Queensland, and three new species of Sakuraeolis are described, one from India and two from Tanzania. A new species of Herviella is described from Tanzania.     

Molecular evolution of P transposable elements in the genus Drosophila. I. The saltans and willistoni species groups

A phylogenetic survey using the polymerase chain reaction (PCR) has identified four major P element subfamilies in the saltans and willistoni species groups of Drosophila. One subfamily, containing about half of the sequences studied, consists of elements that are very similar to the canonical (and active) P element from D. melanogaster. Within this subfamily, nucleotide sequence differentiation among different copies from the same species and among elements from different species is relatively low. This observation suggests that the canonical elements are relatively recent additions to the genome or, less likely, are evolving slowly relative to the other subfamilies. Elements belonging to the three noncanonical lineages are distinct from the canonical elements and from one another. Furthermore, there is considerably more sequence variation, on the average, within the noncanonical subfamilies compared to the canonical elements. Horizontal transfer and the coexistence of multiple, independently evolving element subfamilies in the same genome may explain the distribution of P elements in the saltans and willistoni species groups. Such explanations are not mutually exclusive, and each may be involved to varying degrees in the maintenance of P elements in natural populations of Drosophila.      

A new workerless social parasite in the ant genus Pseudomyrmex (Hymenoptera: Formicidae), with a discussion of the origin of social parasitism in ants

The New World ant genus Pseudomyrmex (subfamily Pseudomyrmecinae) contains about 180 species, of which only one workerless social parasite, P . leptosus , from Florida, has been previously recorded. A new species discovered recently in northern Argentina, P . inquilinus sp. nov., is more derived morphologically and behaviourally than P . leptosus and has convergently developed features characteristic of the workerless inquilines known in other ant subfamilies. These features include diminutive size, reduced mouthparts, a broadened petiole and postpetiole, well-developed subpetiolar and subpostpetiolar processes, and the habit of straddling the gaster of the host queen. A cladistic analysis confirms that the new species is not closely related to its host nor to P . leptosus ; it belongs in fact to a different species complex within the genus Pseudomyrmex . Two widespread Neotropical species, P.filiformis and P.subater , to which P.inquilinus appears to be related, show indications of being temporary social parasites on other, unrelated species of Pseudomyrmex . Thus, there is evidence from comparative natural history that the extreme social parasitism seen in the new species from Argentina was preceded by a period of temporary social parasitism, but 'Emery's Rule'– the claim that social parasites are close relatives of, and evolve from, their hosts – is not supported. Rather, parasitism in Pseudomyrmex seems to have arisen through interspecific colonization and exploitation of congeners. A review of the evidence suggests that Emery's Rule has received too uncritical an acceptance in the literature on social parasitism. Uncertainties about the generality of Emery's Rule and about the plausibility of achieving prezygotic isolation under sympatric conditions undermine the theory that social parasites evolve from within populations of their host species.