Historical surveys reveal a long‐term decline in muskrat populations

The muskrat (Ondatra zibethicus) is an iconic species in Canada, valued for both its fur and its integral role in wetland ecosystems, and widely regarded for its perseverance. However, the resilience of this semiaquatic mammal seems to be in question now as increasing evidence points to widespread population declines. Recent analyses of harvest data across North America suggest a reduction in their numbers, but this has not been widely corroborated by population surveys. In this study we replicated historic muskrat house count surveys at two large Great Lakes coastal wetlands and present confirmation that declines in muskrat harvest correspond to actual declines in muskrat abundance. At the Point Pelee National Park marsh and the Matchedash Bay‐Gray Marsh wetland we found that mean muskrat house counts declined by 93% and 91% respectively between historic surveys 40–50 yrs ago and contemporary surveys over the past 7 yrs. The factors responsible for these dramatic declines remain unclear but there may be a relationship with changes in the habitat quality of these wetlands that have occurred over the same time frame. Not only is the loss of muskrats an issue for the resulting loss of the wetland ecosystem services they provide, but it may be an indication of broader marsh ecosystem degradation. As such, a scarcity of muskrats should be considered a red flag for the state of biodiversity in our wetlands. Continued surveys and ongoing research are needed to shed more light on the current status of muskrat populations and their marsh habitats across their native range.     

A synergistic trio of invasive mammals? Facilitative interactions among beavers,muskrats, and mink at the southern end of the Americas

With ecosystems increasingly having co-occurring invasive species, it is becoming more important to understand invasive species interactions. At the southern end of the Americas, American beavers (Castor canadensis), muskrats (Ondatra zibethicus), and American mink (Neovison vison), were independently introduced. We used generalized linear models to investigate how muskrat presence related to beaver-modified habitats on Navarino Island, Chile. We also investigated the trophic interactions of the mink with muskrats and beavers by studying mink diet. Additionally, we proposed a conceptual species interaction framework involving these invasive species on the new terrestrial community. Our results indicated a positive association between muskrat presence and beaver-modified habitats. Model average coefficients indicated that muskrats preferred beaver-modified freshwater ecosystems, compared to not dammed naturally flowing streams. In addition, mammals and fish represented the main prey items for mink. Although fish were mink’s dominant prey in marine coastal habitats, muskrats represented >50 % of the biomass of mink diet in inland environments. We propose that beavers affect river flow and native vegetation, changing forests into wetlands with abundant grasses and rush vegetation. Thus, beavers facilitate the existence of muskrats, which in turn sustain inland mink populations. The latter have major impacts on the native biota, especially on native birds and small rodents. The facilitative interactions among beavers, muskrats, and mink that we explored in this study, together with other non-native species, suggest that an invasive meltdown process may exist; however further research is needed to confirm this hypothesis. Finally, we propose a community-level management to conserve the biological integrity of native ecosystems.     

Effects of location,exposure and physical structure on juvenile recruitment of the sea urchin Strongylocentrotus droebachiensis in the Gulf of Maine

Summary

Studies of juvenile recruitment of the green sea urchin Strongylocentrotus droebachiensis in the Gulf of Maine were conducted during the summer of 1995. These experiments confirmed 12 years of previous observations that settlement only occurs during the months of June and July. Settlement panels were placed at a series of sites along the Maine and New Hampshire coastline to compare recruitment in the northeastern and southwestern regions of the Gulf of Maine. The densities of urchins recruiting in Casco Bay and at the Isles of Shoals were two orders of magnitude higher than those from Eastport and Winter Harbor. There was a discontinuity in settlement densities at Penobscot Bay. Experiments conducted at the Isles of Shoals showed a positive relationship between water motion and larval supply, but neither parameter correlated with recruitment density over eight stations. Contrary to previous results, recuitment was greater within natural, as well as, artificial kelp beds compared to urchin barren areas and control panels outside the experimental kelp beds. The impact of changing community structure due to urchin harvesting was discussed as an factor influencing differences in juvenile urchin recruitment.     

Genetic differentiation between Apis cerana cerana populations from Damen Island and adjacent mainland in China

Geographic isolation interrupted gene flow between populations leading to population differentiation during the long evolutionary period. In this paper, 33 colonies from Damen Island and 100 colonies from adjacent mainland populations, Juxi and Chixi, were analyzed with both mitochondrial tRNA^leu-COII sequences and five microsatellite loci. The results showed that Apis cerana cerana population from Damen Island significantly differentiated from its adjacent mainland populations. In addition, Damen Island population showed a lower level of genetic diversity in terms of the number of mitochondrial haplotypes while both island and mainland populations showed a low level of genetic diversity with mutilocus analysis. The divergent small island population A.c. cerana might probably have suffered inbreeding and genetic drift as well as limited gene flow across the strait. Our data provides useful information for management and preservation for the Damen Island population.     

Predation by gulls on crabs in rocky intertidal and shallow subtidal zones of the Gulf of Maine

Most organisms in intertidal areas are marine in origin; many have distributions that extend into the subtidal zone. Terrestrial predators such as mammals and birds may exploit these animals during low tide and can have considerable effects on intertidal food webs. Several studies have shown that avian predators are capable of reducing densities of sessile and slow-moving intertidal invertebrates but very few studies have considered avian predation on mobile invertebrate predators such as crabs. In this study, we investigated predation by Great Black-backed Gulls (Larus marinus Linnaeus) on three species of crabs (Cancer borealis Stimpson, Cancer irroratus Say, and Carcinus maenas Linnaeus). The study was at Appledore Island, ME (a gull breeding island) and 8 other sites throughout the Gulf of Maine, including breeding islands and mainland sites. On Appledore Island, intertidal and subtidal zones provided over one-third of prey remains found at gull nests, and crabs were a substantial proportion (∼ 30% to 40%) of the total remains. Similarly, collections of prey remains from intertidal areas indicated that crabs were by far the most common marine prey. C. borealis was eaten far more often and C. irroratus and C. maenas less often than expected at each site. Comparing numbers of carapaces to densities of crabs in low intertidal and shallow subtidal zones at each site, we estimated that gulls remove between 15% and 64% of C. borealis during diurnal low tides. The proportion of C. borealis eaten by gulls was independent of proximity to a gull colony. Approximately 97% of the outer coast of Maine is within 20 km of a breeding island. Thus, a lot of gull predation on crabs may occur throughout the Gulf of Maine during summer months. Crabs are important predators of other invertebrates; if predation by gulls reduces the number of crabs in intertidal and shallow subtidal areas, gulls may have important indirect effects on intertidal food webs.     

Spatial variation in mink and muskrat interactions in Canada

We investigated the spatial attributes of mink ( Mustela vison ) and muskrat ( Ondatra zibethicus ) interactions in Canada using 160 geographically paired historic time series of mink ( n =80) and muskrat ( n =80) harvest data obtained from Hudson's Bay Co. Archives. All series were 25 years in length (1925–1949) and were distributed primarily throughout five ecozones. We used autoregressive models and cross-correlation analysis to characterize the interactions between mink and muskrat. Model selection results did not differ among ecozones, and indicated that a predator-prey autoregressive model incorporating a delayed density-dependent term best described both the mink and muskrat harvest time series. Subsequent analysis of autoregressive coefficients and estimated lags indicated that mink and muskrat interactions vary throughout Canada. In western Canada, the trophic interactions appear to be strong, and mink population cycles lag behind muskrats 2–3 years. In central Canada, mink harvests lagged behind muskrats 1 year, and mink and muskrat interactions in central Canada, with the exception of the Hudson Plains ecozone, were intermediate. In eastern Canada, the trophic interactions appeared weakest, and there were no distinct time lags between mink and muskrat. Stronger interactions in western Canada may be a result of decreased prey diversity, forcing mink to specialize more on muskrats, whereas comparatively stronger perturbations stemming from other trophic interactions may alter the estimated interaction between mink and muskrat in eastern Canada.     

Phylogenetic affinities and inter-island differentiation in the Vitelline Warbler Dendroica vitellina, a West Indian endemic

The Vitelline Warbler Dendroica vitellina is endemic to the Cayman Islands and Swan Islands in the West Indies. This study examined the phylogenetic affinities of the Vitelline Warbler and assessed mitochondrial differentiation among the three Cayman Island populations. Species-level phylogenetic analyses based on 3639 nucleotides of mitochondrial DNA (mtDNA) sequence were used to place the Vitelline Warbler in the larger Dendroica radiation. These analyses confirmed that the Vitelline Warbler is the sister taxon of the Prairie Warbler Dendroica discolor, a species that breeds in continental North America. The magnitude of mitochondrial differentiation between these sister taxa (2.4%) supports their current classification as separate taxonomic species. Additional comparisons based on the 1041-nucleotide NDII gene sequence from 26 Vitelline Warblers provided evidence of within-species genetic structure. NDII haplotypes from Grand Cayman vs. Cayman Brac/Little Cayman differed by 6–10 nucleotide substitutions, and no haplotypes were shared among these island groups, supporting the current separation of the Cayman Island populations into two subspecies. These patterns support the biogeographical scenario that the Vitelline Warbler was derived from a mainland population of the Prairie Warbler. This may have occurred due to a loss of migration in ancestral populations or from over-water dispersal of a mainland resident population.     

Springtime in the Delta: the Socio-Cultural Importance of Muskrats to Gwich’in and Inuvialuit Trappers through Periods of Ecological and Socioeconomic Change

Global socioeconomic and ecological changes strongly impact Indigenous communities by affecting food security, physical health, and overall wellbeing. Throughout the 1900s, residents of the Mackenzie Delta in Canada’s western Arctic relied heavily on the muskrat (Ondatra zibethicus) for food, fur, and culture, but recent changes to ecological and economic conditions have altered the nature of this relationship. We investigated the role of muskrats in the cultural traditions and land-based livelihoods of the Gwich’in and Inuvialuit residents of the Mackenzie Delta through interviews and meetings with over 70 community members. Although the role of muskrats has changed over the last 100 years, muskrat harvesting continues to offer Delta residents a meaningful way to remain engaged in, perpetuate, and strengthen their cultural identity and land-based traditions among generations, and ultimately, to foster individual and community wellbeing.     

Genetic structure of introduced populations: 120‐year‐old DNA footprint of historic introduction in an insular small mammal population

Wildlife populations have been introduced to new areas by people for centuries, but this human‐mediated movement can disrupt natural patterns of genetic structure by altering patterns of gene flow. Insular populations are particularly prone to these influences due to limited opportunities for natural dispersal onto islands. Consequently, understanding how genetic patterns develop in island populations is important, particularly given that islands are frequently havens for protected wildlife. We examined the evolutionary origins and extent of genetic structure within the introduced island population of red squirrels (Sciurus vulgaris) on the Channel Island of Jersey using mitochondrial DNA (mtDNA) control region sequence and nuclear microsatellite genotypes. Our findings reveal two different genetic origins and a genetic architecture reflective of the introductions 120 years ago. Genetic structure is marked within the maternally inherited mtDNA, indicating slow dispersal of female squirrels. However, nuclear markers detected only weak genetic structure, indicating substantially greater male dispersal. Data from both mitochondrial and nuclear markers support historic records that squirrels from England were introduced to the west of the island and those from mainland Europe to the east. Although some level of dispersal and introgression across the island between the two introductions is evident, there has not yet been sufficient gene flow to erase this historic genetic “footprint.” We also investigated if inbreeding has contributed to high observed levels of disease, but found no association. Genetic footprints of introductions can persist for considerable periods of time and beyond traditional timeframes of wildlife management.     

Large mainland populations of South Island robins retain greater genetic diversity than offshore island refuges

For conservation purposes islands are considered safe refuges for many species, particularly in regions where introduced predators form a major threat to the native fauna, but island populations are also known to possess low levels of genetic diversity. The New Zealand archipelago provides an ideal system to compare genetic diversity of large mainland populations where introduced predators are common, to that of smaller offshore islands, which serve as predator-free refuges. We assessed microsatellite variation in South Island robins (Petroica australis australis), and compared large mainland, small mainland, natural island and translocated island populations. Large mainland populations exhibited more polymorphic loci and higher number of alleles than small mainland and natural island populations. Genetic variation did not differ between natural and translocated island populations, even though one of the translocated populations was established with five individuals. Hatching failure was recorded in a subset of the populations and found to be significantly higher in translocated populations than in a large mainland population. Significant population differentiation was largely based on heterogeneity in allele frequencies (including fixation of alleles), as few unique alleles were observed. This study shows that large mainland populations retain higher levels of genetic diversity than natural and translocated island populations. It highlights the importance of protecting these mainland populations and using them as a source for new translocations. In the future, these populations may become extremely valuable for species conservation if existing island populations become adversely affected by low levels of genetic variation and do not persist.     

Microsatellite variation and microevolution in the critically endangered San Clemente Island loggerhead shrike (Lanius ludovicianus mearnsi)

Polymorphic nuclear microsatellite loci were used to characterize genetic variation in contemporary and historic populations of the San Clemente Island loggerhead shrike (Lanius ludovicianus mearnsi), an endangered bird with a current population of 30 individuals that is endemic to to one of the California Channel Islands. We also compared the population of the shrike with two contemporary populations of the still abundant subspecies, L. l. gambeli, which live 120 km away on the adjacent mainland. The current population of L. l. mearnsi has 60 per cent of the genetic variation of the mainland shrike populations and is strongly differentiated from them. Comparison of living birds with 19 birds collected in 1915 shows that most of the variation within the island population was lost before the recent 90 per cent decline in population size, and the 20 per cent decrease in variation this century is probably attributable to genetic drift. Mitochondrial DNA control region sequence data from 80 year old specimens show that there may have been limited introgression to L. l. mearnsi, this century, from another island subspecies, L. l. anthonyi, found in the northern Channel Islands. Today, gene flow between L. l. mearnsi and mainland L. l. gambel is very low, even though a few mainland birds visit the island annually. The island subspecies population has evolved sufficient genetic independence to justify ongoing conservation efforts to counter demographic collapse and genetic erosion; the course of genetic erosion can now be monitored non-invasively, as demonstrated by this study, based on DNA amplified from feathers.     

外马廊山岛植被特性与植物多样性

该研究对无居民海岛舟山外马廊山岛进行初步踏勘,了解该岛植被特征与植物多样性,探讨海岛植被与大陆植被的差异性,并对海岛植物的主要植物组成、生活型结构、地理成分、群落类型以及多样性和相似性进行了分析。结果表明:外马廊山岛面积小,共有33科51属55种植物,植物种类偏少,留存有普陀狗哇花,滨柃,厚叶石斑木等具有滨海特色植物,具有开发潜力。外马廊山岛热带成分较为明显,与附近地区较为相似。岛上群落优势种或建群种的科为山茶科,大戟科,松科等,与大陆的常绿阔叶林的优势种或建群种的优势科如樟科,金缕梅科,壳斗科,山茶科等不大相同。岛上植物主要以高位芽植物为主(58.18%),但较大陆常绿阔叶林的高位芽植物比例要低。外马廊山岛植物群落结构简单,植物多样性相对较低,物种丰富较低,主要原因在于生态适应性和演替过程的差异,岛上植物群落演替至稳定群落还需要相当一段时间。外来种比例占9.09%,外来种如黑松和红鸡竹能形成群落或在群落中具有较为明显的优势,并可能会造成一定的生态干扰。     

Human-Assisted Invasions of Pacific Islands by Litoria Frogs: A Case Study of the Bleating Tree Frog on Lord Howe Island

There are substantial differences among taxonomic groups in their capacity to reach remote oceanic islands via long-distance overwater dispersal from mainland regions. Due to their permeable skin and intolerance of saltwater, amphibians generally require human-assisted dispersal to reach oceanic islands. Several Litoria frog species have been introduced to remote islands throughout the Pacific Ocean region. Lord Howe Island (LHI) is an oceanic island that lies approximately 600 km east of the Australian mainland and has a diverse, endemic biota. The bleating tree frog (Litoria dentata) is native to mainland eastern Australia, but was accidentally introduced to LHI in the 1990s, yet its ecology and potential impact on LHI has remained unstudied. We used a mitochondrial phylogeographical approach to determine that L. dentata was introduced from the Ballina region in northeastern New South Wales. The founding population was likely accidentally introduced with cargo shipped from the mainland. We also completed the first detailed investigation of the distribution, ecology and habitat use of L. dentata on LHI. The species is widespread on LHI and is prevalent in human habitat, cattle pasture and undisturbed forest. We discuss the potential impact of introduced Litoria species on Pacific islands and outline what biosecurity protocols could be implemented to prevent the introduction of further amphibian species to the ecologically sensitive oceanic area.     

Deciphering translocations from relicts in Baranof Island mountain goats: is an endemic genetic lineage at risk?

Human-mediated movement of wildlife is a common practice in North America. Some translocations have occurred where local populations were thought to be extinct or simply not present. In Alaska’s Alexander Archipelago, mountain goats (Oreamnos americanus) were not considered indigenous and were introduced to Baranof Island in 1923. However, a range-wide survey using microsatellites and mitochondrial DNA revealed a distinct genetic subpopulation endemic to the island. In this study, we attempted to clarify the evolutionary history of the mountain goats on Baranof Island by examining sequence variation in the Y chromosome. We first screened five regions of the Y chromosome in a subset of mountain goats from across their native range. We detected a single polymorphic site in the SRY promoter, and subsequently sequenced this gene in 100 mountain goats. A unique Y chromosome polymorphism was restricted to Baranof Island and an area near Haines, Alaska, and not detected in the presumed source population. An island-to-mainland dispersal scenario from a cryptic refugial population during the retreat of the Cordilleran ice-sheet would account for this distribution. Overall, these data support the hypothesis that a glacial relict population of mountain goats was present on the island prior to introduction. Based on a combination of mitochondrial, microsatellite, and Y chromosome data, we recommend recognizing Baranof Island mountain goats as an evolutionary significant unit.     

Assessing genetic diversity for conservation management: a case study of a threatened reptile

The consequences of inbreeding in small isolated populations are well documented, yet populations are often managed in isolation to avoid irreversibly mixing genetic lineages and to maintain the historic integrity of each population. Three remaining populations of Whitaker's skink ( Cyclodina whitakeri ) in New Zealand, remnants of a once wider distribution, illustrate the conflict between this genetic goal (separate management of populations) with the more tangible and immediate threats of small population size and inbreeding. Middle and Castle Islands harbour populations of C. whitakeri and have been separated from each other and from the mainland for ∼10 000 years. The single mainland population at Pukerua Bay is extremely small, declining and deemed a high priority for management. We sequenced a 550 bp region of mitochondrial DNA (mtDNA,ND2) and genotyped animals from all three populations at 13 microsatellite loci. The population of C. whitakeri at Pukerua Bay showed marked differences from the island populations at both mtDNA (unique, fixed haplotype) and microsatellite loci ( F _ST∼0.20), and private alleles were detected at a high frequency (24% of all alleles). However, we attribute this pattern to an historic genetic gradient coupled with rapid genetic drift. Further, animals in captivity show genetic signatures of both Pukerua Bay and island populations, despite the goal to maintain a pure Pukerua Bay stock. The mixed genetic stock in captivity provides an opportunity for the addition of skinks from Middle Island to evaluate the risks of further population hybridization, including the disruption of potential local adaptation, while mitigating the risks of inbreeding.     

A molecular approach to understand the riddle of the invasive success of the tarantula,Brachypelma vagans,on Cozumel Island,Mexico

Invasive populations typically demonstrate genetic isolation which results in a loss of genetic diversity and a reduction in invasion success. This study focused on the genetic population of a successful invasive species of tarantula. Individuals were sampled in two mainland localities of the Yucatan Peninsula (Zoh-Laguna and Raudales), in addition to two island localities (El Cedral and Rancho Guadalupe on Cozumel Island). All populations present high genetic diversity (mean: H_e = 0.23, P = 99%), with significant differences between the Raudales and Rancho Guadalupe localities. The AMOVA analysis revealed a significant population structure (14.5% variation among populations), consistent with the gene differentiation coefficient (G_ST = 0.21), and spatial analysis of population structure. Our results suggested that the original introduced population did not suffer a loss of genetic diversity during establishment on the island, possibly a result of different biological conditions. Population structure analysis leads us to suggest that one island population is similar to the original genetic profile, whereas the genotypic profile of the other island population reflects recent introductions from the mainland. We identified a potential risk of extinction for one local mainland population, suggesting that this species may be a successful invader in a new environment but endangered in some parts of its natural area.     

Barn owls (<Emphasis Type="Italic">Tyto alba</Emphasis>) in western North America: phylogeographic structure,connectivity, and genetic diversity

The barn owl (Tyto alba) is a non-migratory species widely distributed across much of North America in areas with extensive old-field and grassland habitat and without extensive winter snow cover. We investigated the genetic diversity and phylogeographic patterns of barn owl populations in western North America, ranging from British Columbia (BC) to southern California, and one eastern population from Pennsylvania. We also determined the genetic distinctiveness of a population off the coast of southern California, Santa Barbara Island, as management plans to control the local owl population are being considered to decrease predation rate on the now threatened Scripps’s Murrelet (Synthliboramphus scrippsi). Using 8 polymorphic microsatellite markers (N = 126) and ND2 mitochondrial sequences (N = 37), we found little to no genetic structure among all sampled regions, with the exception of Santa Barbara Island. The BC mainland population, despite its northwestern geographically peripheral location and ongoing habitat degradation, is not genetically depauperate. However, individuals from Vancouver Island, likewise a peripheral population in BC, exhibited the lowest genetic diversity of all sampled locations. The low global F_ST value (0.028) estimated from our study suggests that old-field agricultural habitats are well connected in North America. Since the BC population has declined by about 50 % within the last three decades, it is vital to focus on preserving the remaining barn owl habitats in BC to allow successful establishment from neighbouring populations. Additionally, our microsatellite data revealed that the population on Santa Barbara Island showed genetic divergence from its continental counterpart. Mitochondrial data, however, demonstrated that this island population is not a monophyletic lineage containing unique haplotypes, and hence cannot be designated as an Evolutionarily Significant Unit.     

FEEDING AND GROWTH OF THE AEOLID NUDIBRANCH CUTHONA NANA (ALDER AND HANCOCK, 1842)

Feeding and growth of the aeolid nudibranch Cuthona nana wasdocumented. Cuthona nana feeds specifically on the colonialhydroid Hydractinia echinata. Nudi-branchs were observed onhermit crab shells in Gos-port Harbor at the Isles of Shoals,Maine and on old bridge pilings near Gerrish Island, Maine. Grazing rates of nudibranchs (3–25 mm) were quantifiedover 24 hour periods in the laboratory. Larger nudibranchs consumedmore hydroid tissue feeding mostly on polyps, whereas smallerindividuals consumed less and fed on mat tissue. Grazing intensityin the field at Gosport Harbor was determined by estimatingthe area of grazed patches of hydroid colonies attached to hermitcrab shells. The average patch size was 5.75% of the total colonyarea. Growth rates for nudibranchs were determined in the laboratory.Growth rates were greatest prior to maturation and oviposition.Animals from Gerrish Island and Gosport Harbor decreased insize after oviposition due to senescence. Nudibranchs from GerrishIsland reached a maximum size of 12 mm, compared to 23 mm foranimals at Gosport Harbor. ^*Present address: Division of Science and Mathematics. Universityof Minnesota, Morris. Minnesota 56267, USA     

Impact assessment of an invasive flatworm, Convoluta convoluta, in the Southern Gulf of Maine

Convoluta convoluta (Abildgaard 1806) is a small (2-3 mm long) acoellous turbellarian flatworm from Europe that has invaded the Gulf of Maine within the last 5 years. Although it has been reported in densities of up to 19 individuals/cm², its ecological impact remains unknown. In its native habitat, it consumes harpacticoid copepods and primary settling mussels <0.5-mm shell length. This study estimated the impact of C. convoluta on juvenile blue mussel populations (Mytilus edulis Linnaeus 1758) around the Isles of Shoals in the southern Gulf of Maine, USA as well as looking at their distribution in their new habitat. We surveyed worm densities at sites of differing wave exposure over three substrates (hard substrates, bladed algae, filamentous algae) to quantify patterns of worm abundance. We found worms on all substrate types with their highest abundances occurring in areas of maximal sunlight exposure and minimal physical disturbance. We showed a definite pattern of consumption of mussels in the lab and found C. convoluta to consume up to 35% of primary settling mussels in the field, but only under certain conditions. Per capita impact on juvenile mussels was found to vary greatly in correlation with mussel recruitment rate and water temperature, but not with the consumption of harpacticoids. Our results also suggested that per capita interaction strength was reduced by intraspecific density-dependent competition and water temperature. The overall impact of C. convoluta on mussel populations in the southern Gulf of Maine is therefore estimated to be minimal.     

Evaluation of introgressive hybridization among Cervidae in Japan's Kinki District via two novel genetic markers developed from public NGS data

Hybridization and backcrossing of native populations with introduced species can lead to introgression and genetic alteration. In this study, we evaluated introgression in 43 deer from a potential hybrid zone around Okinoshima Island, Kinki District, Japan. This region witnessed the migration of a hybrid population (cross between the Formosan sika deer [Cervus nippon taiouanus] and other deer species) that could potentially breed with the native Japanese sika deer (C. n. centralis). We used an existing genetic marker for the mitochondrial cytochrome b gene and two novel markers for nuclear DNA, developed using publicly available next‐generation sequencing data. We identified one mainland deer with a mitochondrial haplotype identical to that of the Formosan sika deer as well as nuclear heterozygous sequences identical to those of Formosan and Japanese sika deer. This suggests that the mainland deer is a hybrid offspring of the Okinoshima population and native deer. However, only Japanese sika deer sequences were found in the other 42 samples, indicating limited introgression. Nevertheless, hybridization pre‐ and postintroduction in the Okinoshima population could cause multispecies introgression among Japanese sika deer, negatively affecting genetic integrity. We developed a simple test based on polymerase chain reaction–restriction fragment length polymorphism to detect introgression in natural populations. Our method can accelerate genetic monitoring of Japanese sika deer in Kinki District. In conclusion, to prevent further introgression and maintain genetic integrity of Japanese sika deer, we recommend establishing fences around Okinoshima Island to limit migration, besides a continued genetic monitoring of the native deer.