微生物在碳的海洋生物地球化学循环中的作用

微生物在碳的海洋生物地球化学循环中的作用郑天凌,王海黎,洪华生（厦门大学环境科学研究中心３６１００５）ＲｏｌｅｏｆＭｉｃｒｏｏｒｇａｎｉｓｍｓｉｎＢｉｏｇｅｏｃｈｅｍｉｃａｌＣｙｃｌｉｎｇｏｆＣａｒｂｏｎｉｎＯｃｅａｎｓ．￥ＺｈｅｎｇＴｉａｎｌｉｎｇ...     

Oceans and society: feedbacks between ocean and human health

The concentration of human population along coastlines has far-reaching effects on ocean and societal health. The oceans provide benefits to humans such as food, coastal protection and improved mental well-being, but can also impact negatively via natural disasters. At the same time, humans influence ocean health, for example, via coastal development or through environmental stewardship. Given the strong feedbacks between ocean and human health there is a need to promote desirable interactions, while minimising undesirable interactions. To this end, we articulate two scenarios for 2030. First, Business-as-Usual, named ‘Command and (out of) Control’, focuses on the anticipated future based on our current trajectory. Second, a more sustainable scenario called ‘Living and Connecting’, emphasises the development of interactions between oceans and society consistent with achieving the Sustainable Development Goals. We describe a potential pathway to achieving the ‘Living and Connecting’ scenario, centred on improving marine citizenship, achieving a more equitable distribution of power among stakeholders, and more equitable access to resources and opportunities. The constituent actions of this pathway can be categorised into four groups: (i) improved approaches to science and health communication that account for society’s diverse values, beliefs and worldviews, (ii) a shift towards more trusted relationships among stakeholders to enable two-way knowledge exchange, (iii) economic incentives that encourage behavioural changes necessary for achieving desired sustainability outcomes, and (iv) stronger regulations that simultaneously focus on ocean and human health. We contend that these changes will provide improved outcomes for both oceans and society over the United Nations Decade of Ocean Science.

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From Sea to Sea: Canada's Three Oceans of Biodiversity

Evaluating and understanding biodiversity in marine ecosystems are both necessary and challenging for conservation. This paper compiles and summarizes current knowledge of the diversity of marine taxa in Canada''s three oceans while recognizing that this compilation is incomplete and will change in the future. That Canada has the longest coastline in the world and incorporates distinctly different biogeographic provinces and ecoregions (e.g., temperate through ice-covered areas) constrains this analysis. The taxonomic groups presented here include microbes, phytoplankton, macroalgae, zooplankton, benthic infauna, fishes, and marine mammals. The minimum number of species or taxa compiled here is 15,988 for the three Canadian oceans. However, this number clearly underestimates in several ways the total number of taxa present. First, there are significant gaps in the published literature. Second, the diversity of many habitats has not been compiled for all taxonomic groups (e.g., intertidal rocky shores, deep sea), and data compilations are based on short-term, directed research programs or longer-term monitoring activities with limited spatial resolution. Third, the biodiversity of large organisms is well known, but this is not true of smaller organisms. Finally, the greatest constraint on this summary is the willingness and capacity of those who collected the data to make it available to those interested in biodiversity meta-analyses. Confirmation of identities and intercomparison of studies are also constrained by the disturbing rate of decline in the number of taxonomists and systematists specializing on marine taxa in Canada. This decline is mostly the result of retirements of current specialists and to a lack of training and employment opportunities for new ones. Considering the difficulties encountered in compiling an overview of biogeographic data and the diversity of species or taxa in Canada''s three oceans, this synthesis is intended to serve as a biodiversity baseline for a new program on marine biodiversity, the Canadian Healthy Ocean Network. A major effort needs to be undertaken to establish a complete baseline of Canadian marine biodiversity of all taxonomic groups, especially if we are to understand and conserve this part of Canada''s natural heritage.     

The Tara Oceans Project:New Opportunities and Greater Challenges Ahead

<正>In the May 22,2015 issue of Science magazine,several articles(including the editorial,research papers,and perspectives)were published on the Tara Oceans Project and studies related to ocean microbes[1–8].This represents truly a milestone for studies in both ocean ecology and microbial communities.As stated on the European Molecular Biology Laboratory(EMBL)website(http://www.embl.de/tara-oceans/start/):‘‘Tara Oceans results reveal climate change insights,and a     

Acoustic Pollution in the Oceans: The Search for Legal Standards

The introduction of noise into the marine environment may have significant impacts on marine species and ecosystems. This article examines how the existing international legal framework can be used to address this issue. After providing some background information on sound in the marine environment, the relevant global and regional instruments dealing with the protection of the marine environment, marine pollution, and the conservation of marine species and ecosystems are discussed. The analysis suggests that international law already requires states to address various aspects of this issue. A number of instruments and institutions provide an adequate framework to prescribe rules and standards regarding most sources of acoustic pollution.     

Marine Ecology of Seabirds in Polar Oceans

Patterns of seabird species' distributions differ between theAntarctic and the Arctic. In the Antarctic, distributions areannular or latitudinal, with strong similarities in speciescomposition of seabird communities in all ocean basins at agiven latitude. In the Arctic, communities are arranged meridionally,and show strong differences between ocean basins and, at a givenlatitude, between sides of ocean basins. These differences betweenthe seabird communi ies in the Northern Hemisphere and the SouthernHemisphere reflect differences in the patterns of flow of majorocean current systems. At smaller spatial scales, in both hemispheresthe species composition of seabird communities is sensitiveto changes in watermass characteristics. The distribution of avian biomass is affected by both physicaland biological features of the ocean. In the Antarctic, muchseabird foraging is over deep water, and withinseason, small-scalepatchiness in prey abundance and availability in ice-free watersis likely to be controlledprimarily by the behavior of the prey,rather than by physical features. Thus, prey availability maybe unpredictable in time and space. In contrast, in the NorthernHemisphere, most seabirdforaging is concentrated over shallowcontinental shelves, where currents interact with bathymetryto produce predictable physical features capable of concentratingprey or making prey more easily harvested by seabirds. Ice cover appears to be the most important physical featurein the Antarctic. An entire community of birds is specializedto use prey taken near the ice edge. These prey consist of avariety of species, some of which are normally found much deeperin the water than the birds takingthem can dive. The open-waterportion of the marginal ice zone is also an important foraginghabitat for Antarctic marine birds. In the Arctic, a food webbased on underice algae is used by marine birds, but few ifany data exist on avian use of the open water segment of themarginal ice zone. Recent simultaneous surveys of birds and their prey indicatethat only rarely does the small-scale abundance of birds matchthat of their prey; correlations between predators and preyaregenerally stronger at larger scales. Evidence is accumulatingin the Antarctic that the largestaggregations of krill may bedisproportionately important to foraging seabirds.     

Phagotrophy by the picoeukaryotic green alga Micromonas: implications for Arctic Oceans

Photosynthetic picoeukaryotes (PPE) are recognized as major primary producers and contributors to phytoplankton biomass in oceanic and coastal environments. Molecular surveys indicate a large phylogenetic diversity in the picoeukaryotes, with members of the Prymnesiophyceae and Chrysophyseae tending to be more common in open ocean waters and Prasinophyceae dominating coastal and Arctic waters. In addition to their role as primary producers, PPE have been identified in several studies as mixotrophic and major predators of prokaryotes. Mixotrophy, the combination of photosynthesis and phagotrophy in a single organism, is well established for most photosynthetic lineages. However, green algae, including prasinophytes, were widely considered as a purely photosynthetic group. The prasinophyte Micromonas is perhaps the most common picoeukaryote in coastal and Arctic waters and is one of the relatively few cultured representatives of the picoeukaryotes available for physiological investigations. In this study, we demonstrate phagotrophy by a strain of Micromonas (CCMP2099) isolated from Arctic waters and show that environmental factors (light and nutrient concentration) affect ingestion rates in this mixotroph. In addition, we show size-selective feeding with a preference for smaller particles, and determine P vs I (photosynthesis vs irradiance) responses in different nutrient conditions. If other strains have mixotrophic abilities similar to Micromonas CCMP2099, the widespread distribution and frequently high abundances of Micromonas suggest that these green algae may have significant impact on prokaryote populations in several oceanic regimes.     

The Distribution of Particulate Organic Carbon in the Oceans: Ecological Implications

Distribution of participate organic carbon (POC) in the oceans appears to be in the form of small “clouds” high in POC superimposed on lower background values typical of depth and water mass. The background values display an exponential decrease with depth. Samples taken at close intervals, both vertical and horizontal, suggest that the extent of these clouds in water below the photic zone must be less than a meter in any dimension. The concentration of POC in the clouds is of the same order as that found in surface waters. Feeding behaviour of the larger zooplankton may involve active searching for these patches; the organisms should be examined for evidences of mechanisms for finding patches. The maximum distance between patches, even in deeper water, must be of the order of a few tens of meters.     

Special Issue Oceans and Humans Health: The Ecology of Marine Opportunists

Opportunistic marine pathogens, like opportunistic terrestrial pathogens, are ubiquitous in the environment (waters, sediments, and organisms) and only cause disease in immune-compromised or stressed hosts. In this review, we discuss four host–pathogen interactions within the marine environment that are typically considered opportunistic: sea fan coral–fungus, eelgrass–Labyrinthula zosterae, sea fan–Labyrinthulomycetes, and hard clam–Quahog Parasite Unknown with particular focus on disease ecology, parasite pathology, host response, and known associated environmental conditions. Disease is a natural part of all ecosystems; however, in some cases, a shift in the balance between the host, pathogen, and the environment may lead to epizootics in natural or cultured populations. In marine systems, host–microbe interactions are less understood than their terrestrial counterparts. The biological and physical changes to the world’s oceans, coupled with other anthropogenic influences, will likely lead to more opportunistic diseases in the marine environment.     

8-Methyladenosine-substituted analogues of 2-5A: synthesis and their biological activities.

8-Methyladenosine-substituted analogues of 2-5A, p5'A2'p5'A2'p5'(me8A), p5'A2'p5'(me8A)2'p5'(me8A), p5'(me8A)2'p5'(me8A)2'p5'(me8A), and p5'(me8A) 2'p5'A2'p5'A, were prepared via a modification of a lead ion-catalyzed ligation reaction. These 2-5A monophosphates were converted into the corresponding 5'-triphosphates. Substitution of an 8-methyladenosine residue at the third position (2'-terminus) of the oligonucleotides increased the stability to snake venom phosphodiesterase digestion. Both binding and activation of mouse liver 2-5A dependent ribonuclease (RNase L) by the various 8-methyladenosine-substituted 2-5A analogues were examined. Among the 8-methyladenosine-substituted trimer analogues, the analogues with 8-methyladenosine residing in the 2'-terminal position showed the strongest binding affinity and were several times more effective than 2-5A itself as an inhibitor of translation.     

Actinocyclus exiguus sp. nov. from the southern parts of the Indian and Atlantic Oceans

A new species, Actinocyclus exiguus, a small centric diatom, is described from the southern Indian and Atlantic Oceans. The pseudonodulus, a diagnostic feature of the genus and family, has not been seen in the light microscope and is more easily seen on the inside of eroded valves with the aid of the scanning electron microscope. A. exiguus is compared to closely related species.     

Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans.

The extent of the diversity of marine prokaryotes is not well known, primarily because of poor cultivability. However, new techniques permit the characterization of such organisms without culturing, via 16S rRNA sequences obtained directly from biomass. We performed such an analysis by polymerase chain reaction amplification with universal primers on five oligotrophic open-ocean samples: from 100-m (three samples) and 500-m depths in the western California Current (Pacific Ocean) and from a 10-m depth in the Atlantic Ocean near Bermuda. Of 61 clones, 90% were in clusters of two or more related marine clones obtained by ourselves or others. We report 15 clones related to clone SAR 11 found earlier near Bermuda (S. J. Giovannoni, T. B. Britschgi, C. L. Moyer, and K. G. Field, Nature [London] 345:60-63, 1990), 11 related to marine cyanobacteria, 9 clustered in a group affiliated with gram-positive bacteria, 9 in an archaeal cluster we recently described (mostly from the 500-m sample), 4 in a novel gamma-proteobacterial cluster, and 6 in three two-membered clusters (including other archaea). One clone was related to flavobacteria. Only the cyanobacteria plus one other clone, related to Roseobacter denitrificans (formerly Erythrobacter longus Och114), were within 10% sequence identity to any previously sequenced cultured organism in a major data base. We never found more than two occurrences of the same sequence in a sample, although four times we found identical sequences between samples, two of which were between oceans; one of these sequences was also identical to SAR 11.(ABSTRACT TRUNCATED AT 250 WORDS)     

175 Toward an Optical Biogeography of the Oceans

Invasions of marine communities by seaweeds are increasing globally. Vectors for introductions are primarily aquaculture and the aquarium trade. Attention to these vectors has been minimal, and few, if any, regulations exist to prevent seaweed introductions. Challenges in preventing, eradicating, and controlling invasive seaweeds will be discussed using the invasion of Caulerpa taxifolia in southern California as a model.