Recent advances in New Caledonian biogeography

The biota of New Caledonia is one of the most unusual in the world. It displays high diversity and endemism, many peculiar absences, and far‐flung biogeographic affinities. For example, New Caledonia is the only place on Earth with both main clades of flowering plants – the endemic Amborella and ‘all the rest’, and it also has the highest concentration of diversity in conifers. The discovery of Amborella's phylogenetic position led to a surge of interest in New Caledonian biogeography, and new studies are appearing at a rapid rate. This paper reviews work on the topic (mainly molecular studies) published since 2013. One current debate is focused on whether any biota survived the marine transgressions of the Paleocene and Eocene. Total submersion would imply that the entire fauna was derived by long‐distance dispersal from continental areas since the Eocene, but only if no other islands (now submerged) were emergent. A review of the literature suggests there is little actual evidence in geology for complete submersion. An alternative explanation for New Caledonia's diversity is that the archipelago acted as a refugium, and that the biota avoided the extinctions that occurred in Australia. However, this is contradicted by the many groups that are anomalously absent or depauperate in New Caledonia, although represented there by a sister group. The anomalous absences, together with the unusual levels of endemism, can both be explained by vicariance at breaks in and around New Caledonia. New Caledonia has always been situated at or near a plate boundary, and its complex geological history includes the addition of new terranes (by accretion), orogeny, and rifting. New Caledonia comprises ‘basement’ terranes that were part of Gondwana, as well as island arc and forearc terranes that accreted to the basement after it separated from Gondwana. The regional tectonic history helps explain the regional biogeography, as well as distribution patterns within New Caledonia. These include endemics on the basement terranes (for example, the basal angiosperm, Amborella), disjunctions at the West Caledonian fault zone, and great biotic differences between Grande Terre and the Loyalty Islands.     

土壤微生物生物地理学研究进展

生物地理学是研究生物（包括种群、群落等不同层次）地理分布格局及成因的一门交叉学科。微生物生物地理学的研究长期滞后于宏生物地理学。鉴于土壤微生物在调控生物地球化学过程和维持生态系统功能方面的重要作用,对其空间分布格局及形成机制的认识具有十分重要的理论和实际意义。随着分子生物学技术的发展,对微生物多样性的认知日益深入。越来越多的证据表明,土壤微生物群落结构和多样性具有一定的时空分布格局,从而对微生物全球性随机分布的传统观点提出了挑战。对当前土壤微生物生物地理学研究中的一些概念性问题,如微生物物种的定义、微生物多样性的定量测度、对微生物全球性随机分布的争论等,进行了系统评述;以微生物种-面积关系和距离-衰减关系为例对当前最新的土壤微生物生物地理学研究成果进行总结,并初步探讨了土壤微生物群落的地带性分布问题;在传统生物地理学理论的指导下,提出了一个可用于验证土壤微生物空间分布格局形成和机制维持的简单研究框架。这些对今后土壤微生物生物地理学的研究有一定借鉴和指导意义。     

昆虫共生细菌研究进展

昆虫体内定殖着大量微生物,经过漫长协同进化,昆虫与这些微生物构建了共生体系,这些昆虫共生微生物参与整个生态过程,对于生态系统中物质转化与交换、能量流动与利用、信息传递与调控等均发挥着重要作用。昆虫共生细菌具有丰富的物种多样性;昆虫与其共生细菌之间通过化学机制、生理机制、生态学机制和遗传学机制构建复杂的共生体系;昆虫为细菌提供稳定的生境并共享特定的代谢途径,共生细菌则协助宿主营养代谢,提供食物中缺乏的养分,促进昆虫生长和繁殖;通过分泌抗菌肽、毒素等,细菌能增强昆虫对寄生物的防御能力和抗病性,并通过调节昆虫对非生物因子的抗逆性和耐药性,扩大昆虫的生态位。昆虫共生细菌在农林牧渔业可持续安全生产与医药研发等领域具有应用潜力和广阔的发展前景。     

Recent advances and synthesis in biodiversity and biogeography of arenicolous Collembola

Synthesis and new data on interstitial Collembola-fauna in littoral and continental sand sediments. Collembola biodiversity in supralitoral and inland sands can not be compared to the biodiversity developed in mineral soils or leaf litter, and Collembola biodiversity in intertidal sands is lower. The problem of the dispersial of these littoral sand Collembola is considered. A number of species appear have a trans-oceanic dispersal on considerable distances on or in sea water.     

人肠道病毒71型与宿主相互作用研究进展

自1969年首次从美国加利福尼亚患者分离出人肠道病毒71型(Human enterovirus 71,HEV71)后,该病毒已在世界范围内造成多次暴发流行,近年来又在中国大陆、中国台湾及其他亚太地区流行。该肠道病毒主要引起婴幼儿手足口病,但在某些患儿可表现为严重的神经系统感染和呼吸、循环功能     

植物无融合生殖研究新进展

无融合生殖是指不经过雌雄配子融合而产生种子的一种特殊生殖方式,能使基因型的杂合性得以保持,从而可以固定杂种优势,对作物育种具有极其重要的意义。目前大量的研究都在设法将无融合生殖作为一种重要的植物育种手段。本文对近几年来无融合生殖新种质资源的发现、主要研究方法、遗传机制和相关基因等方面的最新进展作了介绍,并对无融合生殖研究中存在的问题和发展前景作了讨论。     

Co-evolution between Frankia populations and host plants in the family Casuarinaceae and consequent patterns of global dispersal

Symbioses between the root nodule-forming, nitrogen-fixing actinomycete Frankia and its angiospermous host plants are important in the nitrogen economies of numerous terrestrial ecosystems. Molecular characterization of Frankia strains using polymerase chain reaction/restriction fragment length polymorphism (PCR/RFLP) analyses of the 16S rRNA-ITS gene and of the nifD-nifK spacer was conducted directly on root nodules collected worldwide from Casuarina and Allocasuarina trees. In their native habitats in Australia, host species contained seven distinctive sets of Frankia in seven different molecular phylogenetic groups. Where Casuarina and Allocasuarina trees are newly planted outside Australia, they do not normally nodulate unless Frankia is introduced with the host seedling. Nodules from Casuarina trees introduced outside Australia over the last two centuries were found to contain Frankia from only one of the seven phylogenetic groups associated with the host genus Casuarina in Australia. The phylogenetic group of Frankia found in Casuarina and Allocasuarina trees introduced outside Australia is the only group that has yielded isolates in pure culture, suggesting a greater ability to survive independently of a host. Furthermore, the Frankia species in this group are able to nodulate a wider range of host species than those in the other six groups. In baiting studies, Casuarina spp. are compatible with more Frankia microsymbiont groups than Allocasuarina host spp. adapted to drier soil conditions, and C. equisetifolia has broader microsymbiont compatibility than other Casuarina spp. Some Frankia associated with the nodular rhizosphere and rhizoplan, but not with the nodular tissue, of Australian hosts were able to nodulate cosmopolitan Myrica plants that have broad microsymbiont compatibility and, hence, are a potential host of Casuarinaceae-infective Frankia outside the hosts' native range. The results are consistent with the idea that Frankia symbiotic promiscuity and ease of isolation on organic substrates, suggesting saprophytic potential, are associated with increased microsymbiont ability to disperse and adapt to diverse new environments, and that both genetics and environment determine a host's nodular microsymbiont.     

Inducing drought tolerance in plants: Recent advances

Undoubtedly, drought is one of the prime abiotic stresses in the world. Crop yield losses due to drought stress are considerable. Although a variety of approaches have been used to alleviate the problem of drought, plant breeding, either conventional breeding or genetic engineering, seems to be an efficient and economic means of tailoring crops to enable them to grow successfully in drought-prone environments. During the last century, although plant breeders have made ample progress through conventional breeding in developing drought tolerant lines/cultivars of some selected crops, the approach is, in fact, highly time-consuming and labor- and cost-intensive. Alternatively, marker-assisted breeding (MAB) is a more efficient approach, which identifies the usefulness of thousands of genomic regions of a crop under stress conditions, which was, in reality, previously not possible. Quantitative trait loci (QTL) for drought tolerance have been identified for a variety of traits in different crops. With the development of comprehensive molecular linkage maps, marker-assisted selection procedures have led to pyramiding desirable traits to achieve improvements in crop drought tolerance. However, the accuracy and preciseness in QTL identification are problematic. Furthermore, significant genetic × environment interaction, large number of genes encoding yield, and use of wrong mapping populations, have all harmed programs involved in mapping of QTL for high growth and yield under water limited conditions. Under such circumstances, a transgenic approach to the problem seems more convincing and practicable, and it is being pursued vigorously to improve qualitative and quantitative traits including tolerance to biotic and abiotic stresses in different crops. Rapid advance in knowledge on genomics and proteomics will certainly be beneficial to fine-tune the molecular breeding and transformation approaches so as to achieve a significant progress in crop improvement in future. Knowledge of gene regulation and signal transduction to generate drought tolerant crop cultivars/lines has been discussed in the present review. In addition, the advantages and disadvantages as well as future prospects of each breeding approach have also been discussed.     

Recent advances in the role and biosynthesis of ascorbic acid in plants

The past few years have provided many advances in the role and biosynthesis of L -ascorbic acid (AsA) in plants. There is an increasing body of evidence confirming that AsA plays an important role in the detoxification of reactive oxygen species. The role of AsA in photoprotection has been confirmed in vivo with the use of Arabidopsis mutants. A player in the defence against reactive oxygen species, AsA peroxidase, has been extensively studied at the molecular level, and regulation of this key enzymatic activity appears to occur at several levels. As a cofactor in the hydroxylation of prolyl and lysl-residues by peptidyl-prolyl and -lysyl hydroxylases, AsA plays a part in cell wall synthesis, defence, and possibly cell division. The maintenance of reduced levels of AsA appears to be highly regulated, involving the interplay of both monodehydroascorbate and dehydroascorbate reductases and possibly auxin. A major breakthrough in plant AsA biosynthesis has been made recently, and strong biochemical and genetic evidence suggest that GDP-mannose and L -galactose are key substrates. In addition, evidence for an alternative AsA biosynthetic pathway(s) exists and awaits additional scrutiny. Finally, newly described Arabidopsis mutants deficient in AsA will further increase our understanding of AsA biosynthesis     

Diversity and distribution of Frankia strains symbiotic with Ceanothus in California

Frankia strains symbiotic with Ceanothus present an interesting opportunity to study the patterns and causes of Frankia diversity and distribution within a particular host infectivity group. We intensively sampled Frankia from nodules on Ceanothus plants along an elevational gradient in the southern Sierra Nevada of California, and we also collected nodules from a wider host taxonomic and geographic range throughout California. The two sampling scales comprised 36 samples from eight species of Ceanothus representing six of the seven major biogeographic regions in and around California. The primary objective of this study was to use a quantitative model to test the relative importance of geographic separation, host specificity, and environment in influencing the identity of Ceanothus Frankia symbionts as determined by ribosomal DNA sequence data. At both sampling scales, Frankia strains symbiotic with Ceanothus exhibited a high degree of genetic similarity. Frankia strains symbiotic with Chamaebatia (Rosaceae) were within the same clade as several Ceanothus symbionts. Results from a classification and regression tree model used to quantitatively explain Frankia phylogenetic groupings demonstrated that the only significant variable in distinguishing between phylogenetic groups at the more local sampling scale was host species. At the regional scale, Frankia phylogenetic groupings were explained by host species and the biogeographic province of sample collection. We did not find any significant correspondence between Frankia and Ceanothus phylogenies indicative of coevolution, but we concluded that the identity of Frankia strains inhabiting Ceanothus nodules may involve interactions between host species specificity and geographic isolation.     

Recent advances in chlorophyll biosynthesis and breakdown in higher plants

Chlorophyll (Chl) has unique and essential roles in photosynthetic light-harvesting and energy transduction, but its biosynthesis, accumulation and degradation is also associated with chloroplast development, photomorphogenesis and chloroplast-nuclear signaling. Biochemical analyses of the enzymatic steps paved the way to the identification of their encoding genes. Thus, important progress has been made in the recent elucidation of almost all genes involved in Chl biosynthesis and breakdown. In addition, analysis of mutants mainly in Arabidopsis, genetically engineered plants and the application of photo-reactive herbicides contributed to the genetic and regulatory characterization of the formation and breakdown of Chl. This review highlights recent progress in Chl metabolism indicating highly regulated pathways from the synthesis of precursors to Chl and its degradation to intermediates, which are not longer photochemically active.     

杠柳属植物化学成分研究进展

本文综述了到目前为止,从萝摩科杠柳属植物中分离得到的化学成分及其分布,并介绍了一些植物和化合物的药理作用。     

植物根压研究进展

根压是植物根部产生的一种静水压力,广泛存在于多种植物中。在蒸腾作用很弱的情况下,根压不但可驱动水分从根部流向冠层叶片,缓解因白天强烈蒸腾而导致的水分亏缺,而且在木质部导管栓塞修复方面具有重要作用。虽然国内外学者对根压的产生已有一些解释,普遍接受的观点有渗透理论、代谢理论和水分向上共同运输假说等,但根压产生的机制至今仍是科学家争议的焦点之一。根压的测定方法虽有直接和间接测定、损伤和无损伤测定之分,但较为先进的根压测定技术仍需进一步改善和提升。受水通道蛋白、遗传因素、生境等因素的影响,根压的大小存在差异,即使是较低的根压也会影响农作物生长。在促进转运蛋白质、酶、氨基酸、激素及钙元素等在农作物木质部和韧皮部之间流通方面,适当大小的根压发挥重要作用,且有助于提高农作物产量。因此,加深对植物根压的认识和理解具有重要的生物学意义。该文从根压的定义和产生机制、具有根压的植物类群、根压的测定方法和大小、影响根压的主要因素及根压在植物科学研究领域的意义和影响等多个方面分别进行了归纳总结,并结合当前研究热点和研究成果,针对植物根压研究过程中遇到的问题和后续研究趋势及方向进行了展望。     

生物反应器及其研究技术进展

阐述了生物反应器设计、放大的新理念及关键技术发展,并在此基础上综述了应用于生物技术产品生产的生物反应器的主要发展趋势,包括以代谢流分析为核心的生物反应器系统、基于计算流体力学模拟技术的传统发酵罐改良、微型生物反应器、动物细胞反应器和酶反应器。     

网络分析在宿主植物与菌根真菌共生关系研究中的应用

菌根共生体是生物界最广泛的互惠共生体,共生关系多样性是生物多样性的重要组成部分,当前群落尺度菌根共生关系研究才刚刚起步,但发展迅速。网络分析作为生态学研究的重要手段逐渐在菌根共生关系中得以应用,网络分析为群落尺度探究菌根真菌多样性分布规律、共生机制研究提供新观点和途径,对菌根真菌群落结构、生态功能研究具有重要意义。本文总结了网络分析方法在单点式、双点式和多点式菌根共生关系网络研究中的优势和局限性,同时还阐述了零模型选择和构建网络大小对关系网络度量指数的影响,为菌根真菌群落结构、生态功能研究提供新思路,为后续群落尺度菌根共生关系格局研究提供借鉴。     

转基因植物中RNA介导的病毒抗性研究进展

利用病毒核酸序列培育抗病毒的转基因植物是一个重要的抗病毒基因工程策略。虽然很多种病毒的不同核酸序列已被使用并证明转基因植物有不同程度的抗病毒效果，但其抗病机制大多不清楚。目前至少有两种明显不同的抗病机制类型：一种是要求病毒编码的蛋白质的表达；另一种是仅仅依靠转基因的ＴＮＡ转录。本文综述了这种ＲＮＡ介导的抗性特点、分子生物学、抗病机制，以及与共抑制的相似性，并对ＲＮＡ介导的病毒抗性的意义加以讨论。     

Recent advances in analysis of Chinese medical plants and traditional medicines

Chinese herbal medicine is gaining increasing popularity worldwide for health promotion and adjuvant therapy. Thus, selective and efficient analytical methods are required not only for quality assurance but also for authentication of the plant material. Applications of both chromatographic and electrophoretic techniques to the analysis of medicinal plants and Chinese traditional medicine preparations over the last 3 years are outlined in this review. The role of chemical fingerprinting is highlighted and a brief survey of determination of toxic components, natural and synthetic adulterants is also included. Moreover, different sample pretreatment and extraction methods are discussed.     

Capacity for hexose respiration in symbiotic Frankia from Alnus incana

Frankia vesicle clusters were prepared from Alnus incana (L.) Moench root nodules containing a local source of Frankia by an improved homogenization-filtration procedure. The capacity of the vesicle clusters to metabolize hexoses was investigated by respirometric and enzymological studies. The vesicle clusters could utilize glucose, glucose-6-phosphate and 6-phosphogluconate provided that appropriate cofactors were added to the preparations. The enzymes hexokinase (EC 2.7.1.1), NADP⁺: glucose-6-phosphate dehydrogenase (EC 1.1.1.49) and NAD⁺;6-phosphogluconate dehydrogenase (EC 1.1.1.44) were found in cell-free extracts of the vesicle clusters and kinetic constants for the enzymes were determined. Hexokinase had a lower K_m for glucose than for fructose. Extracts from both symbiotic and propionate grown Frankia AvcII also showed activity of these hexose-degrading enzymes, indicating that their presence is not necessarily dependent on sugars as carbon source. The NAD⁺- dependent 6-phosphogluconate dehydrogenase was only present in Frankia cells and not in alder root cells, which makes this enzyme a useful Frankia -specific marker in these symbiotic systems.