Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene

Toward understanding the genetic diversity and distribution of copepod-associated symbiotic ciliates and the evolutionary relationships with their hosts in the marine environment, we developed a small subunit ribosomal RNA gene (18S rDNA)-based molecular method and investigated the genetic diversity and genotype distribution of the symbiotic ciliates on copepods. Of the 10 copepod species representing six families collected from six locations of Pacific and Atlantic Oceans, 9 were found to harbor ciliate symbionts. Phylogenetic analysis of the 391 ciliate 18S rDNA sequences obtained revealed seven groups (ribogroups), six (containing 99% of all the sequences) belonging to subclass Apostomatida, the other clustered with peritrich ciliate Vorticella gracilis. Among the Apostomatida groups, Group III were essentially identical to Vampyrophrya pelagica, and the other five groups represented the undocumented ciliates that were close to Vampyrophrya/Gymnodinioides/Hyalophysa. Group VI ciliates were found in all copepod species but one (Calanus sinicus), and were most abundant among all ciliate sequences obtained, indicating that they are the dominant symbiotic ciliates universally associated with copepods. In contrast, some ciliate sequences were found only in some of the copepods examined, suggesting the host selectivity and geographic differentiation of ciliates, which requires further verification by more extensive sampling. Our results reveal the wide occurrence and high genetic diversity of symbiotic ciliates on marine copepods and highlight the need to systematically investigate the host- and geography-based genetic differentiation and ecological roles of these ciliates globally.     

Feeding response of a benthic copepod to ciliate prey type,prey concentration and habitat complexity

1. Protozoans are important consumers within microbial food webs and, in turn, they represent potential prey for small metazoans. However, feeding interactions within these food webs are rarely characterised and this is especially true for freshwater sediments. 2. We aimed to quantify the feeding links between a freshwater meiofaunal copepod and ciliates in two laboratory experiments. The first experiment addressed the response of Eucyclops serrulatus towards ciliate density and type (two ciliate species of the same genus differing in terms of body size). A second experiment assessed the effect of habitat structure on feeding rates by introducing different structural complexity into the feeding arena. In contrast to the first experiment, which was run only for one time period, this experiment also tested three different total feeding times (4, 7 and 9 h). 3. Eucyclops serrulatus exhibited high ingestion rates, with 3–69 ciliates copepod^?1 h^?1 consumed depending on food concentration, food type and habitat complexity. Copepods exhibited a preference for the smaller ciliate when total ciliate concentration was low, but selected both ciliates equally when food concentrations were medium or high. However, at very high food concentration, Eucyclops preferred the larger ciliate (which was 1/3 of its own body size), suggesting that the longer handling times of the larger prey are rewarding when the large prey is present in high numbers. In terms of total numbers consumed, copepods fed on more small ciliates, but in terms of carbon units both ciliates were selected equally when total prey concentration was low or medium. However, copepods derived more carbon from the larger prey at high and very high prey concentrations (up to 0.7 μgC out of a maximum of 1.1 μgC copepod^?1 h^?1). Habitat complexity influenced the feeding of copepods when it was observed over time. 4. The copepod–ciliate link is well known from the pelagic zone of both marine and freshwater habitats. We have shown its potential importance within the benthos, where it can be influenced by food identity, food quantity and possibly by habitat complexity.     

Copepod grazing impact on the trophic structure of the microbial assemblage of the San Pedro Channel, California

In August 2002 and March 2003 the trophic structure of the microbialassemblage from the San Pedro Channel, California was studiedfollowing the experimental alteration of the number of copepods.Changes in the abundance/biomass of microorganisms <80 µmduring 3-day incubations were monitored in (i) the absence ofmetazoa >80 µm, (ii) the presence of natural abundancesof metazoa and (iii) the presence of an elevated number of copepods.Prokaryotes and small-sized eukaryotes (<4 µm) dominatedplankton biomass during both experimental months. Diatoms numericallydominated the 10–80 µm plankton in August 2002,but ciliate and heterotrophic dinoflagellate biomass generallyexceeded diatom biomass on both dates. Ingestion of protozooplankton(predominantly ciliates) contributed substantially to copepoddaily carbon rations. The adult copepod assemblage removed 4.6and 36% per day of the microzooplankton standing stocks (10–80µm size fraction) in August and March, respectively. Elevatedcopepod grazing pressure on protozooplankton resulted in increasedbiomass of nanoplankton (<5 µm) presumably via a trophiccascade. Accordingly, the copepod–protozoan trophic linkappears to be a key factor structuring the planktonic microbialassemblage in the San Pedro Channel. This paper is one of six on the subject of the role of zooplanktonpredator–prey interactions in structuring plankton communities.     

Mesozooplankton Grazing on Picocyanobacteria in the Baltic Sea as Inferred from Molecular Diet Analysis

Our current knowledge on the microbial component of zooplankton diet is limited, and it is generally assumed that bacteria-sized prey is not directly consumed by most mesozooplankton grazers in the marine food webs. We questioned this assumption and conducted field and laboratory studies to examine picocyanobacteria contribution to the diets of Baltic Sea zooplankton, including copepods. First, qPCR targeting ITS-1 rDNA sequence of the picocyanobacteria Synechococcus spp. was used to examine picocyanobacterial DNA occurrence in the guts of Baltic zooplankton (copepods, cladocerans and rotifers). All field-collected zooplankton were found to consume picocyanobacteria in substantial quantities. In terms of Synechococcus quantity, the individual gut content was highest in cladocerans, whereas biomass-specific gut content was highest in rotifers and copepod nauplii. Moreover, the gut content in copepods was positively related to the picocyanobacteria abundance and negatively to the total phytoplankton abundance in the water column at the time of sampling. This indicates that increased availability of picocyanobacteria resulted in the increased intake of this prey and that copepods may rely more on picoplankton when food in the preferred size range declines. Second, a feeding experiments with a laboratory reared copepod Acartia tonsa fed a mixture of the picocyanobacterium Synechococcus bacillaris and microalga Rhodomonas salina confirmed that copepods ingested Synechococcus, even when the alternative food was plentiful. Finally, palatability of the picocyanobacteria for A. tonsa was demonstrated using uptake of ¹³C by the copepods as a proxy for carbon uptake in feeding experiment with ¹³C-labeled S. bacillaris. These findings suggest that, if abundant, picoplankton may become an important component of mesozooplankton diet, which needs to be accounted for in food web models and productivity assessments.     

The importance of protozooplankton as prey for copepods in the coastal areas of the central Irish Sea

This study evaluates food supply for copepods, highlighting the trophic relationship between copepods and protozooplankton. To test the hypotheses that protozooplankton prey are capable of sustaining the copepod standing stock in the western Irish Sea, the taxonomic and size composition of these two groups and the size-specific predation of copepods on protozooplankton were investigated. Protozooplankton and copepod samples were collected off the southwest coast of the Isle of Man using 1.7 l Niskin water bottles and two nets (64 and 280 μm meshes), respectively. Copepod predation on protozooplankton was calculated using weight-specific clearance rates from the literature, considering the availability of prey that was accessible to a given size of copepod. Low protozooplankton biomass was dominated by small cells (<60 μm), and high copepod biomass was dominated by small species, which were more efficiently collected by a 64-μm mesh net. However, large copepods were only collected by a 280-μm mesh net, suggesting that the combination of the two nets provided a better estimate of copepod biomass. Predation by the copepod assemblage in the Irish Sea removed 1–47% and 0.5–22% of ciliates and dinoflagellates standing stock, respectively, resulting in 1–40% of the copepod feeding requirement per day. Contrary to our hypothesis, copepods could not meet their feeding requirements by grazing only on the microzooplankton prey (15–200 μm), and other food sources (i.e. nanoplankton) must be important additional dietary components to copepods in the Irish Sea. Handling editor: S. M. Thomaz     

Population regulation and role of mesozooplankton in shaping marine pelagic food webs

Copepods constitute the majority of the mesozooplankton in the oceans.By eating and being eaten copepods have implications for the flow of matterand energy in the pelagic environment. I first consider populationregulation mechanisms in copepods by briefly reviewing estimates of growthand mortality rates and evidence of predation and resource limitation. Theeffects of variations in fecundity and mortality rates for the demography ofcopepod populations are then examined by a simple model, which demonstratesthat population growth rates are much more sensitive to variations inmortality than to variations in fecundity. This is consistent with theobserved tremendous variation in copepod fecundity rates, relatively low andconstant mortality rates and with morphological and behavioralcharacteristics of pelagic copepods (e.g., predator perception and escapecapability, vertical migration), which can all be considered adaptations topredator avoidance. The prey populations of copepods, mainly protozoa(ciliates) and phytoplankton, may be influenced by copepod predation tovarying degrees. The highly variable morphology and the population dynamics(e.g., bloom formation) of the most important phytoplankton prey populations(diatoms, dinoflagellates) suggest that predation plays a secondary role incontrolling their dynamics; availability of light and nutrients as well ascoagulation and sedimentation appear generally to be more important. Thelimited morphological variation of planktonic ciliates, the well developedpredator perception and escape capability of some species, and the oftenresource-unlimited in situ growth rates of ciliates, on the other hand,suggest that copepod predation is important for the dynamics of theirpopulations. I finally examine the implications of mesozooplankton activityfor plankton food webs, particularly their role in retarding vertical fluxesand, thus, the loss of material from the euphotic zone. This revised version was published online in July 2006 with corrections to the Cover Date.     

Live labeling technique reveals contrasting role of crustacean predation on microbial loop in two large shallow lakes

We tested the hypotheses that the ciliate assemblages in moderately eutrophic lake are controlled by the effective crustacean predation, and the high abundances of planktonic ciliates in highly eutrophic and turbid lake are due to insufficient regulation by crustacean zooplankton. A food tracer method coupled with natural assemblage of microciliates labeled with fluorescent microparticles was used to measure the cladoceran and copepod predation rates on planktonic ciliates and to estimate the carbon flow between the ciliate–crustacean trophic links. The results revealed that the microciliates (15–40 μm) were consumed by all dominant cladoceran and copepod species in both the lakes studied, mainly by Chydorus sphaericus and cyclopoid copepods in Lake Võrtsjärv, and by Daphnia spp. and Bosmina spp. in Lake Peipsi. The grazing loss in moderately eutrophic Peipsi indicated strong top-down control of ciliates mainly by cladocerans. The extraordinary abundant population of planktonic ciliates having a predominant role in the food web in highly eutrophic and turbid Võrtsjärv is explained by the measured low crustacean predation rates on ciliates. The estimated carbon flow from the ciliates to crustaceans suggest that in eutrophic lakes majority of the organic matter channeled via metazooplankton to higher trophic levels may originate from the microbial loop.     

Copepod and microzooplankton grazing in mesocosms fertilised with different Si:N ratios: no overlap between food spectra and Si:N influence on zooplankton trophic level

We hypothesized that the trophic level of marine copepods should depend on the composition of the protist community. To test this hypothesis, we manipulated the phytoplankton composition in mesocosms and measured grazing rates of copepods and mesozooplankton in those mesocosms. Twelve mesocosms with Northeast Atlantic phytoplankton were fertilised with different Si:N ratios from 0:1 to 1:1. After 1 week, ten of the mesocosms were filled with natural densities of mesozooplankton, mainly calanoid copepods, while two remained as mesozooplankton-free controls. Both before and after the addition of copepods there was a positive correlation of diatom dominance with Si:N ratios. During the second phase of the experiment, copepod and microzooplankton grazing rates on different phytoplankton species were assessed by a modification of the Landry-Hassett dilution technique, where the bottles containing the different dilution treatments were replaced by dialysis bags incubated in situ. The results indicated no overlap in the food spectrum of microzooplankton (mainly ciliates) and copepods. Ciliates fed on nanoplankton, while copepods fed on large or chain-forming diatoms, naked dinoflagellates, and ciliates. The calculated trophic level of copepods showed a significantly negative but weak correlation with Si:N ratios. The strength of this response was strongly dependent on the trophic levels assumed for ciliates and mixotrophic dinoflagellates.     

Isolation and identification of herbivorous ciliates from contaminated microalgal cultures

Ciliates are a common but understudied group of grazers that can invade microalgal cultures. To estimate the potential impact of ciliates on microalgal culture productivity, the identification of species that can invade these cultures is essential. Furthermore, isolation of these herbivorous ciliates allows to use them in experiments that investigate the impact of ciliate grazing on the productivity of microalgal cultures. The main aims of this study were to isolate and identify ciliates that invade cultures of the freshwater microalgae Chlorella and Chlamydomonas, and to establish a live collection of these ciliates for usage in future experiments. To this end, we optimized a method for isolating ciliates from contaminated microalgal cultures and we developed a new PCR primer set for amplifying the partial 18S rDNA of ciliates belonging to the classes Spirotrichea, Oligohymenophorea and Colpodea. As a result, we isolated 11 ciliates from microalgal enrichment cultures inoculated with non-sterile dust and various freshwater sources. Of these 11 species, 7 were found to be feeding on Chlamydomonas. Ciliate species that fed on Chlorella could not be isolated in this study. Ciliate species feeding on Chlamydomonas were identified based on a combination of morphological observations and molecular analyses of partial 18S rDNA sequences.     

Effect of Algal Food on Animal Prey Consumption Rates in the Omnivorous Copepod,Mesocyclops thermocyclopoides

We measured the food consumption rates in the omnivorous copepod Mesocyclops thermocyclopoides on different animal prey types in the presence of, and in the absence of one of the algal food types, the small, nonmotile Chlorella, or the large, motile Chlorogonium. Animal prey tested included different zooplankton species covering a size range of 88 to 1446 μm. The number of animal prey consumed was inversely proportional, but the total weight consumed was directly proportional, to the body size and dry weight of the prey item. There was a significant reduction in animal prey consumption in the presence of algae, being higher with cladoceran prey than with ciliates and rotifers, and in the presence of Chlorogonium than in the presence of Chlorella. Cannibalism in M. thermocyclopoides was low when algal food was available.     

Predation on ciliates by freshwater calanoid copepods: rates of predation and relative vulnerabilities of prey

• 1 The susceptibility of ciliates in a mesotrophic lake to predation by Epischura lacustris, Diaptomus minutus and D. pygmaeus was assessed during summer. Oligotrichs, particularly Strobilidium velox (c. 43 μm), were removed efficiently by adult copepods and contributed substantially to the diet of female D. minutus. The presence of approximately 1,6 adult Epischura 1-^?1, or sixteen adult female Diaptomus 1-^?1, could halt the growth of S. vechx populations in summer.
• 2 Factors affecting the rate at which copepods prey on ciliates were examined in experiments with D. pygmaeus and cultured ciliates. Rate of predation on S. velox, the preferred species, became saturated at 5 S. velox ml^?1 (45ngCml^?1) and did not change with a 10-fold increase in alternative algal food.
• 3 Behavioural differences among ciliates, and the presence of other ciliates, contributed to differences in ciliate susceptibility to predation and suggest reasons why rates of removal of ciliates are not related to ciliate size.
• 4 By feeding selectively, at high rates, calanoids may suppress populations of some ciliates and thereby influence microzooplankton community structure.

     

First observations of predation by New Zealand Greenshell mussels (Perna canaliculus) on zooplankton

Observations made overseas of predation by blue mussels and zebra mussels on mesozooplankton (>200 μm) have raised concern within New Zealand that the Greenshell mussel, Perna canaliculus, which is cultured in large tonnages throughout hundreds of marine farms within the New Zealand coastal zone, could exert ecologically detrimental effects by preying on zooplankton. We conducted experiments at Clova Bay, Pelorus Sound in May 2002 to determine the rates that P. canaliculus ingests prey, up to and including the mesozooplankton size range. Single mussels from farms were incubated with seawater enriched with zooplankton (>60 μm) in gently circulated 15-l pails. Depletion of chlorophyll-a (chl-a), ciliate microzooplankton, and nauplii, copepodites, and adults of copepods was determined over 5 h, relative to controls with no mussels. Two experiments were made over consecutive days. Gut contents of these experimental mussels, and of mussels examined soon after collection from a farm, were described.Gut contents of experimental and of freshly collected mussels (standard shell length ∼90 mm) had numerous copepod parts, whole copepods and larval bivalves present. Experimental mussels cleared chl-a and ciliates from 59- to 137-l individual⁻¹ day⁻¹, respectively, averaged across the two experiments. Faster ciliate than chl-a clearance was probably caused by the high proportion (56%) of phytoplankton below the retention size for P. canaliculus (ca. 5 μm) and by faster ciliate grazing in controls than treatments. The average clearance rates of adult, copepodite, and naupliar copepod stages by mussels were 20, 31, and 49 l individual⁻¹ day⁻¹, respectively. The clearance rates of each copepod stage were not significantly different between the two experiments. Clearance of nauplii was significantly greater than of adults and copepodites, while adult and copepodite clearance rates were nearly significantly different. The mean lengths of the adult, copepodite, and naupliar copepods were 430, 265, and 165 μm, respectively. The decreasing clearance rates with increasing size and development of prey (from ciliates, through naupliar, copepodite to adult copepods), suggested that prey escape ability, related to body size and/or morphology, affected capture rates. Mussel faecal samples indicated complete digestion of the gut contents. Pseudofaecal samples showed very low rejection rates of mesozooplankton by mussels. The results are considered in context of current biophysical modelling studies of impacts of large mussel farms in New Zealand. Designs of future experiments to improve accuracy of estimates of mesozooplankton clearance rates by P. canaliculus are considered.     

Patterns of prey selectivity in the cyclopoid copepod Mesocyclops thermocyclopoides

In the shallow and eutrophic subtropical aquatic ecosystems, which it generally inhabits, the omnivorous copepod Mesocyclops thermocyclopoides encounters a wide variety of animal prey types including ciliates, rotifers, and cladocerans. We studied prey selectivity in laboratory-reared adult females of this species given a choice of (i) prey types belonging to different taxa (ciliates, rotifers, cladocerans, and cyclopoid nauplii), and (ii) different prey species within a taxonomic group differing in body size, morphology or behaviour. We also tested the effect of different proportions of prey species on its selectivity. Prey type proportion had no significant effect on selectivity of the copepod, nor was there any evidence of switching based on the relative abundance of prey. Among the ciliate prey species tested, the largest species, Stylonychia mytilus was positively selected regardless of its relative abundance, while the smallest, S. notophora was selected only when its density was higher. Offered a choice of three species of a brachionid rotifer differing in size, the copepod selected the largest of them, Brachionus calyciflorus, and avoided the smallest B. angularis. The evasive rotifer Hexarthra mira was also avoided. When prey choice included three cladoceran species Daphnia similoides, Moina macrocopa and Ceriodaphnia cornuta, the copepod selected the intermediate-sized M. macrocopa regardless of the abundance of the other two species. Although it fed on Mesocyclops nauplii when there was no choice, M. thermocyclopoides avoided them when alternative food was available. In a multispecies prey choice test, the copepod selected predominantly the rotifer B. calyciflorus and the cladoceran M. macrocopa. We suggest that the prey selectivity patterns shown by M. thermocyclopoides are adaptive in that they lead to ingestion of the most profitable prey.     

Copepod reaction to odor stimuli influenced by cestode infection

The cestode Schistocephalus solidus uses copepods as first andsticklebacks as second intermediate hosts. For transmission,an infected copepod has to be preyed upon by a stickleback.We used copepods of the species Macrocy albidus to test whetherinfected and uninfected copepods differ in their reaction totwo kind of simultaneously presented odors: odors of sticklebacksand odors of sticklebacks and conspecificz. By giving this choice,we attempted to force the copepods to make a trade-off betweenthe benefit of risk dilution and possible predator confusionand the costs of food competition and other disadvantages inducedby conspecifics. Within 1–8 h after last feeding, uninfectedcopepods clearly preferred the odors of conspeciflcs under thechemically simulated threat of predation. This was in contrastto the infected copepods, who tended to avoid the odor of conspecifics.When the time between experiment and last feeding varied, infectedcopepods showed an increas preference for fish water only (oravoided conspecthcs) with increasing hunger level This suggeststhat S. solidus benefits from hunger-induced behavioral changesof its copepod host by influencing its microhabitat selection.The same effect could be found in both sexes; however, it wassignificantly more pronounced in male than in female copepods.We propose several hypotheses that could explain the differencebetween the sexes in their infection-dependent microhabitatselection.     

Effects of prey motility and concentration on feeding in Acartia tonsa and Temora longicornis: the importance of feeding modes

Feeding experiments were conducted with the ambush-feeding copepodAcartia tonsa and the feeding-current-generating copepod Temoralongicornis. The copepods were offered a mixed diet of the dinoflagellateHeterocapsa triquetra and the ciliate Balanion comatum of similarcell size. The dinoflagellate was offered at a constant concentrationof 10–15 cells mL^–1, whereas the ciliate was offeredat a variety of concentrations, ranging from 7 to 57 cells mL^–1.Copepods with different feeding modes possess different mechanismsfor prey detection, suggesting that the two copepods would responddifferently to the two prey types. Both copepods had significantlyhigher clearance rates on the highly motile ciliate than onthe less motile dinoflagellate. In encounters between A. tonsaand its prey, we argue that this is due to the higher hydromechanicalsignal generated by the ciliate. The advection feeding copepodT. longicornis fed on the two prey according to their relativeconcentrations; in this case, we suggest that although B. comatumis capable of detecting feeding-current-generating predators,the feeding current velocity generated by T. longicornis isgreater than the escape velocity of this ciliate.     

Cyclopoids feed selectively on free-living stages of parasites

1. Many aquatic organisms can consume parasite larvae, thus hampering parasite transmission; however, information about feeding on them in the presence of an alternative prey remains scarce. When having a food choice, predators may decrease parasite consumption, therefore, it is important to assess the role of parasites in the diet of predators in natural communities with different types of prey available. Our study aims to test whether common freshwater cyclopoids feed on trematode free-living stages (cercariae) when an alternative food source is present.
2. We experimentally studied ingestion rates of cyclopoids Macrocyclops distinctus fed with cercariae of trematode Diplostomum pseudospathaceum, a common and harmful parasite of freshwater fishes, and ciliates Paramecium caudatum (an alternative prey, known as suitable food for copepods). First, the feeding response of cyclopoids to different densities of each prey was studied. Then, feeding selectivity in the mixtures of cercariae and ciliates was tested.
3. Feeding rates of cyclopoids increased with prey densities (both ciliates and cercariae) but almost stopped growing at high prey densities, which indicated saturation (Holling type II functional response). In most cases, cyclopoids consumed cercariae at higher rates than ciliates. Maximum ingestion rates estimated from the obtained curves were 37 cercariae ind⁻¹ hr⁻¹ and 17 ciliate ind⁻¹ hr⁻¹.
4. When exposed to prey mixtures, cyclopoids fed on cercariae selectively. When cercariae were offered to cyclopoids at concentrations exceeding the saturation level, the ingestion of ciliates remained constantly low at all ciliate densities. In contrast, the ingestion of cercariae increased with rising cercariae densities even when ciliates were presented ad libitum, decreasing only at very high prey densities. Possible reasons of such feeding preferences are discussed.
5. Our study demonstrated that cyclopoids may prefer to feed on cercariae when there is an alternative food choice and can ingest cercariae at high rates. These experimental results could be extended to natural communities, suggesting that cyclopoids can reduce the transmission of parasites and contribute to the incorporation of parasite production in food webs of lentic ecosystems.

     

Macroevolutionary analyses of ciliates associated with hosts support high diversification rates

Ciliophora is a phylum that is comprised of extremely diverse microorganisms with regard to their morphology and ecology. They may be found in various environments, as free-living organisms or associated with metazoans. Such associations range from relationships with low metabolic dependence such as epibiosis, to more intimate relationships such as mutualism and parasitism. We know that symbiotic relationships occur along the whole phylogeny of the group, however, little is known about their evolution. Theoretical studies show that there are two routes for the development of parasitism, yet few authors have investigated the evolution of these characteristics using molecular tools. In the present study, we inferred a wide dated molecular phylogeny, based on the 18S rDNA gene, for the entire Ciliophora phylum, mapped life habits throughout the evolutionary time, and evaluated whether symbiotic relationships were linked to the variation in diversification rates and to the mode of evolution of ciliates. Our results showed that the last common ancestor for Ciliophora was likely a free-living organism, and that parasitism is a recent adaptation in ciliates, emerging more than once and independently via two distinct routes: (i) a free-living ciliate evolved into a mutualistic organism and, later, into a parasitic organism, and (ii) a free-living ciliate evolved directly into a parasitic organism. Furthermore, we have found a significant increase in the diversification rate of parasitic and mutualistic ciliates compared with their free-living conspecifics. The evolutionary success in different lineages of symbiont ciliates may be associated with many factors including type and colonization placement on their host, as well as physical and physiological conditions made available by the hosts.     

Stable Associations Masked by Temporal Variability in the Marine Copepod Microbiome

Copepod-bacteria interactions include permanent and transient epi- and endobiotic associations that may play roles in copepod health, transfer of elements in the food web, and biogeochemical cycling. Microbiomes of three temperate copepod species (Acartia longiremis, Centropages hamatus, and Calanus finmarchicus) from the Gulf of Maine were investigated during the early summer season using high throughput amplicon sequencing. The most prominent stable component of the microbiome included several taxa within Gammaproteobacteria, with Pseudoalteromonas spp. especially abundant across copepod species. These Gammaproteobacteria appear to be promoted by the copepod association, likely benefitting from nutrient enriched microenvironments on copepods, and forming a more important part of the copepod-associated community than Vibrio spp. during the cold-water season in this temperate system. Taxon-specific associations included an elevated relative abundance of Piscirickettsiaceae and Colwelliaceae on Calanus, and Marinomonas sp. in Centropages. The communities in full and voided gut copepods had distinct characteristics, thus the presence of a food-associated microbiome was evident, including higher abundance of Rhodobacteraceae and chloroplast sequences in the transient communities. The observed variability was partially explained by collection date that may be linked to factors such as variable time since molting, gender differences, and changes in food availability and type over the study period. While some taxon-specific and stable associations were identified, temporal changes in environmental conditions, including food type, appear to be key in controlling the composition of bacterial communities associated with copepods in this temperate coastal system during the early summer.     

Top-down impact by copepods on ciliate numbers and persistence depends on copepod and ciliate species composition

Experiments with the copepods Acartia clausi, Centropages hamatusand Pseudocalanus sp. were performed to assess the species-specificeffect of these copepods on the development of monospecificalgae (Nephroselmis pyriformis) and ciliate communities (Strombidiumvestitum, Strombidium conicum, Strombidium sp. and Lohmanniellaoviformis). It was hypothesized that potentially switching copepodslike A. clausi will stabilize the algal community by switchingbetween ciliate and algal food, in contrast to copepods withstereotypic filter feeding behaviour (Pseudocalanus sp.). Intreatments with Pseudocalanus sp. and C. hamatus, all ciliatespecies were wiped out in 2 days, resulting in blooms of N.pyriformis. In treatments with A. clausi, two of the ciliatespecies were able to persist, but the combined ciliate and copepodcommunity was not able to control the algal bloom. Ciliatesbecame abundant in control treatments without copepods, butonly S. vestitum and S. conicum seemed able to establish grazingcontrol. Hence, when evaluating the role of ciliates in foodwebs, their actual numbers and species composition should betaken into account. Likewise, the species composition of copepodsmay be crucial; these experiments demonstrate that small filterfeeding copepods may have tremendous impact on ciliate numbers.     

Predation by Acartia tonsa Dana on planktonic ciliates and rotifers

In laboratory experiments, adults and nauplii of the calanoid copepod Acartia tonsa Dana feed on planktonic ciliates and rotifers. Adults have a higher clearing rate for planktonic ciliates and rotifers than for phytoplankton. Adult copepods have a maximum clearing rate of ≈200 ml copepod⁻¹ · d⁻¹ for large ciliates, with lower clearing rates for small ciliates. Nauplii have higher clearance for small than for large ciliates. Addition of ciliates or rotifers to the diet of A. tonsa enhances egg production; this effect is due to improved food quality. Microzooplankton may be an important component of the diet of A. tonsa even when phytoplankton are plentiful. Selective predation by copepods probably influences the population dynamics of planktonic ciliates and rotifers in coastal waters.