Microbial community composition in soils of Northern Victoria Land, Antarctica

Biotic communities and ecosystem dynamics in terrestrial Antarctica are limited by an array of extreme conditions including low temperatures, moisture and organic matter availability, high salinity, and a paucity of biodiversity to facilitate key ecological processes. Recent studies have discovered that the prokaryotic communities in these extreme systems are highly diverse with patchy distributions. Investigating the physical and biological controls over the distribution and activity of microbial biodiversity in Victoria Land is essential to understanding ecological functioning in this region. Currently, little information on the distribution, structure and activity of soil communities anywhere in Victoria Land are available, and their sensitivity to potential climate change remains largely unknown. We investigated soil microbial communities from low- and high-productivity habitats in an isolated Antarctic location to determine how the soil environment impacts microbial community composition and structure. The microbial communities in Luther Vale, Northern Victoria Land were analysed using bacterial 16S rRNA gene clone libraries and were related to soil geochemical parameters and classical morphological analysis of soil metazoan invertebrate communities. A total of 323 16S rRNA gene sequences analysed from four soils spanning a productivity gradient indicated a high diversity (Shannon-Weaver values > 3) of phylotypes within the clone libraries and distinct differences in community structure between the two soil productivity habitats linked to water and nutrient availability. In particular, members of the Deinococcus/Thermus lineage were found exclusively in the drier, low-productivity soils, while Gammaproteobacteria of the genus Xanthomonas were found exclusively in high-productivity soils. However, rarefaction curves indicated that these microbial habitats remain under-sampled. Our results add to the recent literature suggesting that there is a higher biodiversity within Antarctic soils than previously expected.     

Distribution of Pratylenchus scribneri between Root and Soil Habitats

The abundance of Pratylenchus scribneri in soil and root habitats was compared in potato and corn plots during 1986-88. Nematodes were extracted from 100-cm³ soil samples and the roots contained within the samples. The percentage of the population recovered from soil, similar among years and crops, averaged ca. 50% at the beginning and end of the growing season and ca. 20% from early to late season. Proportionately more adults and fourth-stage juveniles than younger stages were located outside roots until harvest. In a related study, nematodes were isolated from the roots, root surfaces, and soil associated with roots of whole corn and potato plants sampled from the field. Nematode population estimates calculated from the whole plant samples were generally lower than those based on soil cores, but showed similar patterns of population growth. Nematode density per gram dry weight was highest in roots, intermediate on root surfaces, and lowest in soil. Estimates of the absolute abundance of nematodes in each of the three habitats were highest in roots or soil, depending on the sampling date, and lowest on root surfaces. This study demonstrates that P. scribneri inhabits soil environments even when host roots are present and illustrates the importance of considering all possible habitats when estimating the size of Pratylenchus spp. populations.     

Biological Control Potential of Neoaplectanid Nematodes

The neoaplectanids are among the most studied of all entomogenous nematodes. Because these nematodes kill their insect hosts, they are regarded as having excellent potential as biological control agents. While the host specificity of most entontogenous nematodes tends to limit their potential usefulness, the broad host range and high virulence of neoaplectanids make them attractive candidates for industrial development. Also, recent development of economical mass rearing procedures appears to make production on a commercial basis feasible. Infective stages may be stored for years trader various laboratory conditions. Although entomogenous nematodes, as parasites, are exempt from govermnent registration requirements, the mutualistic association of neoaplectanid nematodes with a bacterium will likely necessitate a detailed safety evaluation. Studies conducted to date indicate a lack of pathogenicity to mammals. Field trial success has been limited by the intolerance of infective stages to mffavorable environmental conditions, particularly low moisture. Applications against pests on exposed plant foliage have been especially disappointing. More encouraging anti consistent results have been obtained in more favorable environments, including soil and aquatic habitats, but the most promising treatment sites ntay be cryptic habitats where infective stages are shehered from environmental extremes. Cryptic habitats also exploit the ability of neoaplectanids to actively seek out hosts in recessed places where conventional insecticide applications are intpractical.     

Winter Survival of Pratylenchus scribneri

Population densities of Pratylenchus scribneri in a Plainfield loamy sand soil were sampled from 1 October to 1 May for 4 years. From May to October of each year, the site was planted to Russet Burbank potato and Wis 4763 corn. Percentages of change in population densities of nematodes were computed on the basis of number of nematodes present on 1 October. The decline of P. scribneri between growing seasons was nonlinear, with most mortality occurring in the autumn before the soil froze. Winter survival, defined as the percentage of change in population densities from 1 October to 1 May the following year, ranged from 50 to 136% for nematodes in corn plots and from 15 to 86% for nematodes in potato plots. There was no difference in survival of nematodes of different life stages or among root and soil habitats. Winter survival of nematodes was density-dependent in 3 of 4 years in corn plots and in 1 of 4 years in potato plots. Although predators were present, their abundance was not correlated with the winter survival of nematodes. Cumulative and average snow cover was correlated with the survival of nematodes associated with corn but not with potato. No relationships between other climatic factors and survivorship were detected.     

Assessing abundance and diversity patterns of soil microarthropod assemblages in northern Victoria Land (Antarctica)

This study aimed to: (1) assess differences between two quantitative sampling methods of soil microarthropods (visual census vs. stone washing) in ice-free areas located along a latitudinal gradient (from 72°37′S to 74°42′S) in northern Victoria Land (Antarctica); (2) furnish preliminary results on the abundance and diversity of mites and springtails in the studied areas. Visual census yielded reliable density estimates for adult collembolans and larger prostigmatic mites but did not detect small species. The study updates the distribution of several mites, including the southernmost record of an Oribatida species at global scale. Species composition was correlated with latitude but the uneven abundance distribution and local high beta-diversity probably reflect habitat fragmentation and population isolation. Under this circumstance nested sampling design should be usefully employed. Priorities and suitable methods for studying terrestrial microarthropod communities in continental Antarctica are discussed.     

Distribution and ecology of the testate rhizopod fauna of the continental Antarctic zone

Summary New records are presented of the occurrence of seven testate rhizopod species in terrestrial habitats in Dronning Maud Land and the Ross Dependency regions of Antarctica: Arcella arenaria, Centropyxis aerophila, Corythion dubium, Difflugia lucida, Diplochlamys timida, Heleopera petricola, Trigonopyxis arcula. All materials examined showed very low species-richness and very low populations (except Arcella arenaria in Bryum moss in Southern Victoria Land) compared with records from other parts of the world. Pooling present results with previous records gives a species list to date of 26 for continental Antarctica. These data are interpreted in light of knowledge of species records from peri-Antarctic islands, Arctic and Alpine regions. It is suggested that temperature, moisture (and the frequency and amplitude of fluctuations in these), pH, and biogeographical factors may be significant influences on the distribution and abundance of testate rhizopod species in continental Antarctica.     

Plant-Parasitic Nematode Communities in Dogwood,Maple, and Peach Nurseries in Tennessee

Nursery blocks (48 dogwood, 27 red maple, and 17 peach) distributed among 20 Tennessee nurseries were sampled for nematodes in March, July, and October 1981. Plant-parasitic nematodes were extracted from soil, counted by genera, and identified to species after fixation. A total of 57 species in 24 genera were found, with 1-16 species occurring in a site. The species most commonly detected were Paratylenchus projectus and Xiphinema americanum, which were found in 88% and 78% of the sites, respectively. Relationships existed between distribution and densities of some species present in more than 10% of the sites and certain soil factors (pH, bulk density, texture, and organic matter content). Plant-parasitic nematode community diversity was related to tree age, percentage of weed ground cover, and number of weed species. Site similarities in community ordinations were dependent on the individual nurseries sampled, tree age, and soil type, but clusters of sites of similar tree ages and soil types were not exclusive.     

Nematode Community Structure in Dogwood,Maple, and Peach Nurseries in Tennessee

Nursery blocks (48 dogwood, 27 maple, 17 peach) in 20 middle Tennessee nurseries were sampled for nematodes in March,July, and October 1981. Dogwoods and maples were grouped in three age classes: 1-2, 3-5, and 10+ years. Nematodes were extracted from soil samples, counted, and assigned to trophic groups as follows: plant parasites, microbivores, fungivores, predators, and omnivores (= Dorylaimida). Total nematode numbers per 200 cm s soil ranged from 52 to 9,166 (mean = 1,785 ± 1,420). Nematodes were more abundant in dogwood and maple than in peach blocks, and their numbers were significantly correlated with percentage of weed ground cover and number of weed species. Nematode numbers in dogwood sites were also correlated with dogwood age. Microbivores were the most abundant trophic group in all sites, followed by plant parasites, fungivores, omnivores, and predators. Nematode communities in nursery sites shared characteristics of both undisturbed and agricultural habitats. Degree and diversity of plant ground cover appeared to be the most important factors determining nematode community structure.     

Reproduction and Parasitism of Pratylenchus neglectus on Potato

An initial density (Pi) of 1,540 Pratylenchus neglectus/kg soil suppressed shoot growth of potato, Solanum tuberosum cv. Russet Burbank, in a greenhouse test at 3 weeks. After 6 weeks, shoot weights were reduced by Pi of 662 and 1,540 nematodes/kg soil, the final soil densities of P. neglectus were twice the respective Pi, and the numbers of nematodes per gram dry root were 5,363 and 7,981. In 1986-88 field microplot experiments with the Norchip cultivar, neither shoot nor root weight was suppressed by P. neglectus. In 1986 a Pi of 115 nematodes/kg soil suppressed the total number and weight of tubers per plant. In 1987 a Pi of 186 nematodes/kg soil suppressed the marketable and total number of tubers by 19 and 25 %, respectively. In 1988 a Pi of 1,884 nematodes/ kg soil reduced total and marketable weight by 18 and 19%, respectively. In 1986 and 1987 nematode population densities in the soil increased 34-fold and 27-fold, respectively. In 1988 the Pi of 1,884 nematodes/kg soil rose to 21,890/kg at midseason, then dropped to 4,370/kg at harvest. These studies show for the first time that P. neglectus reproduces well on potato and can cause yield losses. Because of its distribution and abundance, P. neglectus may be considered an economically important parasite of potato in Ontario.     

Natural Occurrence of Entomogenous Nematodes in Tennessee Nursery Soils

To isolate potential insect biocontrol agents, entomogenous nematodes were surveyed in Tennessee plant nurseries in 1991. Soil samples from 113 nursery sites were baited with greater wax moth (Galleria mellonella) larvae, house cricket (Acheta domesticus) adults, lesser mealworm (Alphitobius diaperings) adults, and house fly (Musca domestica) larvae. Heterorhabditis bacteriophora and Steinernema carpocapsae were each recovered from 17 soil samples. Heterorhabditis bacteriophora was more common in habitats with crape myrtle (Lagerstroemia indica) and Chinese juniper (Juniperus chinensis) than other nursery plants, and S. carpocapsae was more frequently recovered from habitats with juniper and Southern magnolia (Magnolia grandiflora). Bulk density, electrical conductivity, organic matter, pH, temperature, and moisture content of the entomogenous-nematode positive soil samples were compared. Other nematode genera recovered with insect baits included Rhabditis sp., Pelodera sp., Cryptaphelenchoides sp., and Mesodiplogaster sp., which was recovered from a greater percentage of soil samples than the other five genera.     

Biocontrol: Bacillus penetrans and Related Parasites of Nematodes

Bacillus penetrans Mankau, 1975, previously described as Duboscqia penetrans Thorne 1940, is a candidate agent for biocontrol of nematodes. This review considers the life stages of this bacterium: vegetative growth phase, colony fragmentation, sporogenesis, soil phase, spore attachment, and penetration into larvae of root-knot nematodes. The morphology of the microthallus colonies and the unusual external features of the spore are discussed. Taxonomic affinities with the actinomycetes, particularly with the genus Pasteuria, are considered. Also discussed are other soil bacterial species that are potential biocontrol agents. Products of their bacterial fermentation in soil are toxic to nematodes, making them effective biocontrol agents.     

Relationships of Plant Parasitic Nematodes to Sites in Native Iowa Prairies

Soil samples were collected from three native Iowa prairies and analyzed for plant paiasitic nematodes and selected soil properties. Sites or nematodes were clustered with similarities related to habitat by a cluster analysis of site by nematode species and of nematodes by site. Some nematodes occurred in a wide range of prairie habitats, whereas others were more restricted. For example, greater numbers of Xiphinema americanum were in the low, well-drained sites than in the low wet sites or upland dry sites. Wet sites contained fewer nematodes than well-drained sites. Well-drained sites contained mainly Tylenchorhynchus maximus, Helicotylenchus pseudorobustus, and X. americanum. Wetter sites contained almost exclusively X. chambersi, H. hydrophilus, Telylenchus joctus, and an undescribed species of Tylenchorhynchus.     

Steinernema feltiae (DD-136) and S. glaseri: Persistence in Soil and Bark Compost and Their Influence on Native Nematodes

Infective juveniles (J3) of the entomogenous nematodes Steinernema feltiae DD-136 (ca. 10,000 J3/100 ml) and S. glaseri (ca. 2,500 J3/100 ml) were incubated in steam-sterilized and nonsterilized sandy soil and bark compost for 8 weeks at 25 C. The nematodes were recovered by a two-step extraction procedure at 1-week intervals, and their infectivity to lepidopterous larvae (Spodoptera litura and Galleria mellonella) and their effect on the population and community of native nematodes in soil were determined. Survival of inoculated nematodes and mortality of insects were enhanced in sterilized media. Nonsterilized bark compost proved to be equally as suitable a medium as sterilized compost. In nonsterilized soil, the survival curve of S.feltiae declined more rapidly than that or S. glaseri which was less infective to insects despite its greater persistence even in nonsterilized soil. Soon after the addition of steinernematids to soil, the population of native nematodes showed a fluctuation with an increase in rhabditids and a decrease in other kinds of nematodes.     

Plant-parasitic Nematode Communities and Their Associations with Soil Factors in Organically Farmed Fields in Minnesota

A survey was conducted to determine the assemblage and abundance of plant-parasitic nematodes and their associations with soil factors in organically farmed fields in Minnesota. A total of 31 soil samples were collected from southeast (SE), 26 samples from southwest (SW), 28 from west-central (WC), and 23 from northwest (NW) Minnesota. The assemblage and abundance of plant-parasitic nematodes varied among the four regions. The soybean cyst nematode, Heterodera glycines, the most destructive pathogen of soybean, was detected in 45.2, 88.5, 10.7, and 0% of organically farmed fields with relative prominence (RP) values of 10.3, 26.5, 0.6, and 0 in the SE, SW, WC, and NW regions, respectively. Across the four regions, other common genera of plant-parasitic nematodes were Helicotylenchus (42.6, RP value, same below), Pratylenchus (26.9), Tylenchorhynchus and related genera (9.4), Xiphinema (5.6), and Paratylenchus (5.3). Aphelenchoides, Meloidogyne, Hoplolaimus, Mesocriconema, and Trichodorus were also detected at low frequencies and/or low population densities. The similarity index of plant-parasitic nematodes between two regions ranged from 0.44 to 0.71 and the similarity increased with decreasing distance between regions. The densities of most plant-parasitic nematodes did not correlate with measured soil factors (organic matter, pH, texture). However, the densities of Pratylenchus correlated negatively with % sand, and Xiphinema was correlated negatively with soil pH.     

Nematode Community Structure in a Vineyard Soil

Distribution of the nematode community in a California vineyard was studied over a 13-month period. Omnivorous and microbivorous nematodes were similarly distributed in the root zone, with greatest densities occurring between vine rows and near the soil surface. Greatest densities of plant-parasitic nematodes were found in the vine row, with the individual species differing in their vertical distribution. Total nematode biomass was greatest between rows near the surface. Biomass of plant parasites was greatest in the upper 30 cm of soil in the row, whereas biomass of microbivores was greatest in this region between rows. Of the plant-parasitic nematodes, the variability in distribution among vines was greatest for Paratylenchus hamatus and least for Meloidogyne spp.     

Changes in Vertical Distribution of Pratylenchus scribneri under Potato and Corn

The vertical distribution of Pratylenchus scribneri populations was monitored under irrigated corn and potato grown in loamy sand soil. population estimates were based on the number of nematodes recovered from 100-cm³ soil samples and the roots contained therein. Reproduction was assessed by counting the number of second-stage juveniles. An index of population maturity was computed to evaluate the age structure of populations. At no time were nematodes distributed uniformly among five soil depths from 0 to 37.5 cm deep. During the summer (June-September), changes in the total number of P. scribneri and the number of second-stage juveniles recovered were not consistent among the depths sampled. Early (April-June) and late (September-November) in the season, changes in the abundance, reproduction, and maturity of populations were similar among depths. The timing and pattern of increases in numbers of nematodes suggests that variation in the abundance of P. scribneri in the soil profile beneath potato and corn was caused primarily by reproduction rather than the movement of nematodes.     

Effects of Nematophagous Fungi on Numbers and Death Rates of Bacterivorous Nematodes in Arable Soil

In a series of microcosm experiments with an arable, sandy loam soil amended with sugarbeet leaf, the short-term (8 weeks) dynamics of numbers of nematodes were measured in untreated soil and in γ-irradiated soil inoculated with either a field population of soil microorganisms and nematodes or a mixed population of laboratory-propagated bacterivorous nematode species. Sugarbeet leaf stimulated an increase in bacterivorous Rhabditidae, Cephalobidae, and a lab-cultivated Panagrolaimus sp. Differences were observed between the growth rates of the nematode population in untreated and γ-irradiated soils, which were caused by two nematophagous fungi, Arthrobotrys oligospora and Dactylaria sp. These fungi lowered the increase in nematode numbers due to the organic enrichment in the untreated soil. We estimated the annually produced bacterivous nematodes to consume 50 kg carbon and 10 kg nitrogen per ha, per year, in the upper, plowed 25 cm of arable soil.     

Seed Treatment as a Means of Preventing Nematode Damage to Crop Plants

A procedure for treating crop seeds with aqueous solutions of the systemic nematicide oxamyl is described. Seedlings from treated seeds were more resistant to attack by parasitic nematodes. Leachate from treated seeds reduced the number of free-living nematodes in the surrounding soil.     

Survival and Infectivity of Bursaphelenchus xylophilus in Wood Chip-Soil Mixtures

To determine the effect of soil environment on the life stages and total numbers of Bursaphelenchus xylophilus, nematode-infested wood chips alone and mixed with soil were incubated at 12 and 20 C. Nematodes were extracted at 2-week intervals for 12 weeks. Numbers of nematodes and percentage of third-stage dispersal larvae were greater at 12 C and in chips without soil. Percentage of juveniles of the propagative cycle was greater at 20 C and in chips with soil. Although B. xylophilus survived in chips with soil for 12 weeks, nematode numbers and life stage percentages changed little over time. To determine if B. xylophilus was capable of infecting wounded roots, infested and uninfested chips were mixed with soil in pots with white and Scots pine seedlings. Trees were maintained at 20 and 30 C and harvested at mortality or after 12 weeks. Only seedlings treated with infested chips contained nematodes. In field experiments, planted seedlings were mulched with infested chips to determine if nematodes would invade basal stem wounds. Among these trees, Scots pine was more susceptible than white or red pines to infection and mortality.     

Detection and Description of Soils with Specific Nematode Suppressiveness

Soils with specific suppressiveness to plant-parasitic nematodes are of interest to define the mechanisms that regulate population density. Suppressive soils prevent nematodes from establishing and from causing disease, and they diminish disease severity after initial nematode damage in continuous culturing of a host. A range of non-specific and specific soil treatments, followed by infestation with a target nematode, have been employed to identify nematode-suppressive soils. Biocidal treatments, soil transfer tests, and baiting approaches together with observations of the plant-parasitic nematode in the root zone of susceptible host plants have improved the understanding of nematode-suppressive soils. Techniques to demonstrate specific soil suppressiveness against plant-parasitic nematodes are compared in this review. The overlap of studies on soil suppressiveness with recent advances in soil health and quality is briefly discussed. The emphasis is on methods (or criteria) used to detect and identify soils that maintain specific soil suppressiveness to plant-parasitic nematodes. While biocidal treatments can detect general and specific soil suppressiveness, soil transfer studies, by definition, apply only to specific soil suppressiveness. Finally, potential strategies to exploit suppressive soils are presented.