Biological soil crust influence on germination and rooting of two key species in a Stipa tenacissima steppe

Background and aims

In Mediterranean steppes, Stipa tenacissima tussocks facilitate the establishment of vascular plants. We hypothesized that this effect may partially reflect the indirect interaction between Stipa tenacissima, biological soil crusts (BSC), and seeds.

Methods

We explored the relationship between BSC composition and soil surface conditions (surface roughness and hydrophobicity by using the water drop penetration time test), and seed germination and seedling rooting in a S. tenacissima steppe in southeastern Spain. We explored the causal factors of seed germination at two spatial scales and used SADIE index to represents the soil surface heterogeneity.

Results

Microsites strongly differed in BSC composition and soil surface conditions. Germination of two key species, Pistacia lentiscus and Brachypodium retusum, was not affected by BSC type. In contrast, rooting was lower on soil from open areas covered by BSC than on soil from open areas dominated by bare soil and soil collected under the tussocks. The effect was similar in both species. Lichens were probably responsible for the decrease in rooting.

Conclusions

Our results suggest that lichen cover and the cover of bare soil and mosses may hamper and facilitate rooting, respectively. By affecting seedling rooting, BSC may contribute to the facilitative effect of Stipa tenacissima.     

Stand composition,proximity to overstory trees and gradients of soil moisture influence patterns of subalpine fir seedling emergence and survival

Background and Aims

We experimentally examined how variability in mixed forest stand composition, spatial relationships to dominant trees and their environmental correlates influence seedling emergence and survival.

Methods

Fir seeds were placed at distances of 1 and 25 cm in each cardinal direction at the base of mature aspen and fir trees and in interspaces in aspen dominant, mixed and conifer dominant stands and in adjacent meadows. Fir seedling emergence, mortality, water relations and foliar nutrition were determined and soil moisture was measured.

Results

Subalpine fir germination was 9 and 13 fold greater, and seedling mortality was lower in aspen stands than mixed and conifer dominated stands. Germination was two-fold greater at the base of aspen trees compared to fir trees and stand interspaces and was significantly greater on the north side of aspen trees. Soil moisture was greatest in aspen dominated stands, with the highest soil moisture conditions occurring at the base of aspen trees and in interspaces. Fir seedlings had better water relations when growing next to aspen trees and had significantly higher foliar N and P in aspen stands.

Conclusions

Aspen appear to facilitate fir establishment by creating favorable soil resource and light conditions that increase germination rates and seedling survival.     

GPT2: a glucose 6-phosphate/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development

Background and Aims

GPT2, a glucose 6-phosphate/phosphate translocator, plays an important role in environmental sensing in mature leaves of Arabidopsis thaliana. Its expression has also been detected in arabidopsis seeds and seedlings. In order to examine the role of this protein early in development, germination and seedling growth were studied.

Methods

Germination, greening and establishment of seedlings were monitored in both wild-type Arabidopsis thaliana and in a gpt2 T-DNA insertion knockout line. Seeds were sown on agar plates in the presence or absence of glucose and abscisic acid. Relative expression of GPT2 in seedlings was measured using quantitative PCR.

Key Results

Plants lacking GPT2 expression were delayed (25–40 %) in seedling establishment, specifically in the process of cotyledon greening (rather than germination). This phenotype could not be rescued by glucose in the growth medium, with greening being hypersensitive to glucose. Germination itself was, however, hyposensitive to glucose in the gpt2 mutant.

Conclusions

The expression of GPT2 modulates seedling development and plays a crucial role in determining the response of seedlings to exogenous sugars during their establishment. This allows us to conclude that endogenous sugar signals function in controlling germination and the transition from heterotrophic to autotrophic growth, and that the partitioning of glucose 6-phosphate, or related metabolites, between the cytosol and the plastid modulates these developmental responses.     

Decoupling litter barrier and soil moisture influences on the establishment of an invasive grass

Background and aims

Through recruitment, plants establish in novel environments. Recruitment also is the stage where plants undergo the highest mortality. We investigate the recruitment niche for Microstegium vimineum, an annual grass from East Asia spreading throughout eastern North American forests.

Methods

Current observational and greenhouse research indicates that M. vimineum recruitment may be inhibited by leaf litter and promoted by soil moisture; we use field studies to experimentally test how these factors influence M. vimineum germination, seedling survival and reproduction. Specifically, we introduce M. vimineum seeds into forest microhabitats with experimentally varied levels of soil moisture and leaf litter.

Results

Soil moisture increases M. vimineum germination regardless of leaf litter thickness and ameliorates seedling mortality in deep leaf litter. Seed production per m² increases with watering, reflecting higher germination and survival, whereas per capita seed production increases with leaf litter thickness, reflecting density-dependent limits on seed production.

Conclusions

The interactive effects of varied levels of soil moisture and leaf litter thickness on key M. vimineum life history stages highlight the need to consider multiple drivers, such as rainfall and local forest disturbance, when assessing how soil properties influence the establishment of invasive plants.     

Overexpression of a novel salt stress-induced glycine-rich protein gene from alfalfa causes salt and ABA sensitivity in Arabidopsis

Key message

We cloned a novel salt stress-induced glycine-rich protein gene ( MsGRP ) from alfalfa. Its overexpression retards seed germination and seedling growth of transgenic Arabidopsis after salt and ABA treatments.

Abstract

Since soil salinity is one of the most significant abiotic stresses, salt tolerance is required to overcome salinity-induced reductions in crop productivity. Many glycine-rich proteins (GRPs) have been implicated in plant responses to environmental stresses, but the function and importance of some GRPs in stress responses remain largely unknown. Here, we report on a novel salt stress-induced GRP gene (MsGRP) that we isolated from alfalfa. Compared with some glycine-rich RNA-binding proteins, MsGRP contains no RNA recognition motifs and localizes in the cell membrane or cell wall according to the subcellular localization result. MsGRP mRNA is induced by salt, abscisic acid (ABA), and drought stresses in alfalfa seedlings, and its overexpression driven by a constitutive cauliflower mosaic virus-35S promoter in Arabidopsis plants confers salinity and ABA sensitivity compared with WT plants. MsGRP retards seed germination and seedling growth of transgenic Arabidopsis plants after salt and ABA treatments, which implies that MsGRP may affect germination and growth through an ABA-dependent regulation pathway. These results provide indirect evidence that MsGRP plays important roles in seed germination and seedling growth of alfalfa under some abiotic stress conditions.     

Soil nitrification and foliar δ15N declined with stand age in trembling aspen and jack pine forests in northern Alberta,Canada

Aims

Seed germination and seedling emergence are vulnerable to water stress in arid environments. When precipitation is low and unpredictable during the early growing season, seeds near the sand surface often suffer from hydration/dehydration during germination. We investigated the responses of seedling emergence and survival of a sand dune grass with high sand stabilization value to amount and frequency of precipitation and depth of burial in sand.

Methods

Effects of amount and frequency of precipitation, burial and hydration/dehydration on seedling emergence of Leymus secalinus, were examined using standard procedures.

Results

Seedling emergence was affected by amount and frequency of monthly precipitation and depth of burial, and it decreased as precipitation frequency decreased with same amount of precipitation. Highest emergence percentage was obtained with 100 or 150 mm precipitation at 1–4 cm depth. Hydration/dehydration treatments decreased germination and increased dormancy percentage. Young seedlings with root lengths of 0–1 mm desiccated up to 30 days revived after rehydration.

Conclusions

Seedling emergence of L. secalinus is adapted to 150 mm monthly precipitation with frequency of 10–30 times per month, 1–4 cm burial depth and dehydration interval of 1–2 days. Alteration of amount and/or frequency of precipitation caused by climate change could markedly affect seedling emergence and population regeneration of this species.     

Root foraging capacity depends on root system architecture and ontogeny in seedlings of three Andean Chenopodium species

Aims

Morphological and ontogenetic variation in root system architecture holds ecological significance, particularly in low-resource habitats where soil rooting is critical for both seedling establishment and water and nutrient uptake. To assess this variation under contrasted agroecological backgrounds, root architecture and rooting patterns were compared in Andean populations of Chenopodium hircinum, Chenopodium pallidicaule and two ecotypes (wet- and dry-habitat) of Chenopodium quinoa.

Methods

Seedlings were grown in rhizotrons under controlled water and nutrient availability. Root branching and elongation dynamics were characterized during 6 weeks after germination, while leaf area, above and below-ground biomass, and specific root length were determined at the end of the experiment.

Results

Despite large differences in aboveground biomass, all populations showed similar herringbone root systems. The dry-habitat C. quinoa had generally the highest root trait values, with fast taproot elongation, thick roots and long root segments resulting in high total root length and deep root proliferation.

Conclusion

Irrespective of their contrasting agroecological background, the studied chenopods displayed a similar root system topology. However, from very early development stages, they showed differential root foraging patterns with two extremes: fast and vigourous rooting at depth in the dry-habitat C. quinoa, and shallow and thin root system in C. pallidicaule adapted to shallow-soil and high-altitude habitats.     

Germination responses to water potential in neotropical pioneers suggest large-seeded species take more risks

Background and Aims

In neotropical forests, very small-seeded pioneer species (<0·1 mg seed mass) recruit preferentially in small tree fall gaps and at gap edges, but large-seeded pioneers do not. Since water availability is related to gap size, these differences in microsite preference may reflect in part species-specific differences in germination at reduced water potentials.

Methods

For 14 neotropical pioneer species, the hypothesis is tested that small-seeded species, with shallow initial rooting depths, reduce the risks associated with desiccation by germinating more slowly and at higher water potentials than large-seeded species.

Key Results

Germination occurred both more quickly and at lower water potentials with increasing seed mass. For example, Ochroma pyramidale (seed mass 5·5 mg) had a time to 50 % germination (T₅₀) of 2·8 d and a median base potential for germination (ψ_b50) of −1·8 MPa while Clidemia quinquenervia (seed mass 0·017 mg) had a T₅₀ of 17·6 d and ψ_b50 of −1·1 MPa.

Conclusions

These data suggest that small-seeded species germinate only in comparatively moist microsites, such as small canopy gaps, which may reduce the risk of drought-induced mortality. Conversely, large-seeded species are able to germinate in the drier environment of large gaps, where they benefit by enhanced seedling growth in a high irradiance environment. The positive association of seed size and canopy gap size for optimal seedling establishment is maintained by differential germination responses to soil water availability coupled with the scaling of radicle growth rate and seed size, which collectively confer greater drought tolerance on large-seeded species.Key words: Germination, seed size, Panamá, neotropical, pioneer, water potential     

Nitrogen or phosphorus limitation in rich fens? - Edaphic differences explain contrasting results in vegetation development after fertilization

Background and aims

Many rich fens are threatened by high nutrient inputs, but the literature is inconsistent with respect to the type of nutrient limitation and the influence of edaphic characteristics.

Methods

We performed experiments with N- and P-fertilization in three endangered rich fen types: floating fen with Scorpidium scorpioides, non-floating fen with Scorpidium cossonii, floodplain fen with Hamatocaulis vernicosus. In addition, K-fertilization was carried out in the floodplain fen.

Results

The floodplain fen showed no response to P-addition, but N- and K-addition led to grass encroachment and decline of moss cover and species richness. In contrast, in the P-limited floating fen with S. scorpioides, P-addition led to increased vascular plant production at the expense of moss cover. Scorpidium scorpioides, however, also declined after N-addition, presumably due to ammonium toxicity. The fen with S. cossonii took an intermediate position, with NP co-limitation. These striking contrasts corresponded with edaphic differences. The N-limited fen showed low Ca:Fe ratios and labile N-concentrations, and high concentrations of plant-available P and Fe-bound P. The P-limited fen showed an opposite pattern with high Ca:Fe ratios and labile N-concentrations, and low P-concentrations.

Conclusions

This implies that edaphic characteristics dictate the nature of nutrient limitation, and explain contrasting effects of N- and P-eutrophication in different fens.     

Toward understanding the ecological role of mucilage in seed germination of a desert shrub Henophyton deserti: interactive effects of temperature, salinity and osmotic stress

Aims

Seeds of Henophyton deserti (Brassicaceae), an endemic saharan shrub in south Tunisia, produce a pectinaceous mucilage layer that can imbibe a large amount of water when wetted. The aim of this study was to explore the role of mucilage in seed germination of this shrub under heterogeneous stressful environments.

Methods

Germination of both intact and demucilaged seeds was tested over wide ranges of temperature, and in iso-osmotic solutions of NaCl and PEG. Recovery of germination after NaCl and Polyethylene Glycol (PEG)-6000 treatment was also tested. The effect of mucilage on water uptake was measured and the structure of the seed investigated.

Results

A considerable proportion of seed mass (30 %) is made up of mucilage, which is extremely hydrophilic and able to increase seed mass by 550 % over dry seeds. Mucilage water uptake appears to be unaffected by salt concentration, while higher concentrations of PEG inhibit mucilage hydration. Mucilage decreases germination specifically at 10 °C and this effect can be interpreted in relation to oxygen uptake. High concentrations of NaCl and PEG decrease both germination percentage and rate, with some greater tolerance at 15 °C and 20 °C versus 25 °C. Recovery was higher from higher concentrations of NaCl and PEG and lower temperatures, with a clear inhibitory effect of mucilage.

Conclusions

The study has shown that the mucilage of H. deserti may act as a physical barrier for regulating diffusion of water and oxygen to the inner tissue of the seed and thereby prevent germination under unsuitable conditions.     

Is salinity the main ecologic factor that shapes the distribution of two endemic Mediterranean plant species of the genus Gypsophila?

Aims

Responses to salt stress of two Gypsophila species that share territory, but with different ecological optima and distribution ranges, were analysed. G. struthium is a regionally dominant Iberian endemic gypsophyte, whereas G. tomentosa is a narrow endemic reported as halophyte. The working hypothesis is that salt tolerance shapes the presence of these species in their specific habitats.

Methods

Taking a multidisciplinary approach, we assessed the soil characteristics and vegetation structure at the sampling site, seed germination and seedling development, growth and flowering, synthesis of proline and cation accumulation under artificial conditions of increasing salt stress and effect of PEG on germination and seedling development.

Results

Soil salinity was low at the all sampling points where the two species grow, but moisture was higher in the area of G. tomentosa. Differences were found in the species’ salt and drought tolerance. The different parameters tested did not show a clear pattern indicating the main role of salt tolerance in plant distribution.

Conclusions

G. tomentosa cannot be considered a true halophyte as previously reported because it is unable to complete its life cycle under salinity. The presence of G. tomentosa in habitats bordering salt marshes is a strategy to avoid plant competition and extreme water stress.     

Different non-host resistance responses of two rice subspecies,japonica and indica,to Puccinia striiformis f. sp. tritici

Key message

Japonica and indica have different non-host resistance (NHR) abilities to Puccinia striiformis f. sp. tritici ( Pst ), and hydrogen peroxide (H ₂ O ₂ ) has a positive function in NHR to japonica against Pst.

Abstract

Non-host interactions between Puccinia striiformis f. sp. tritici (Pst) and two rice subspecies were characterized using 23 rice varieties, including 11 japonica and 12 indica. Results showed that the infected fungal structures were easily produced in the leaves of indica, whereas only several substomatal vesicles and primary infection hyphae were observed in the leaves of japonica. This result indicated that indica is less resistant or more susceptible to Pst than japonica. Hydrogen peroxide accumulated in the initial phase of japonica–Pst interaction but not in indica–Pst interaction. A set of reactive oxygen species (ROS)-related genes was also induced in response to Pst infection, suggesting that ROS activation is one of the major mechanisms of non-host resistance of rice to Pst.     

Correction to: Neighbourhood stories: role of neighbour identity,spatial location and order of arrival in legume and non-legume initial interactions

Background and aims

We characterized fungal endophytes of seeds of invasive, non-native Phragmites from three sites in the Great Lakes region to determine if fungal symbiosis could contribute to invasiveness through their effects on seed germination and seedling growth.

Methods

Field-collected seeds were surface sterilized and plated on agar to culture endophytes for ITS sequencing. Prevalence of specific endophytes from germinated and non-germinated seeds, and from seedlings, was compared.

Results

One-third of 740 seeds yielded endophyte isolates. Fifteen taxa were identified with Alternaria sp. representing 54% of all isolates followed by Phoma sp. (21%) and Penicillium corylophilum (12%). Overall germination of seeds producing an isolate (36%) was significantly higher than seeds not producing an isolate (20%). Penicillium in particular was strongly associated with increased germination of seeds from one site. Sixty-three isolates and 11 taxa were also obtained from 30 seedlings where Phoma, Penicillium and Alternaria respectively were most prevalent. There was a significant effect of isolating an endophyte from the seed on seedling growth.

Conclusions

These results suggest that many endophyte taxa are transmitted in seeds and can increase seed germination and seedling growth of invasive Phragmites. The role of fungal endophytes in host establishment, growth and invasiveness in nature requires further research.

     

Fine-root dynamics in sugi (Cryptomeria japonica) under manipulated soil nitrogen conditions

Aims

Nitrogen deposition affect fine-root dynamics, a key factor in forest carbon and nutrient dynamics. This study aimed to elucidate the effects of increased soil inorganic nitrogen (N) levels on the fine-root dynamics of Cryptomeria japonica, which is tolerant to excess N load.

Methods

An ammonium nitrate solution (28 kg ha^?1 month^?1) was applied for 3 years to plots (1 m?×?2 m) in a C. japonica plantation. The elongation and disappearance of the fine roots were examined using the minirhizotron technique.

Results

The N fertilization increased soil inorganic N content and lowered the soil pH. Fine-root elongation rates increased with fertilization, whereas patterns of their seasonal changes were not affected. The ratio of cumulative disappearance to cumulative elongation of fine roots was lower in the N-fertilized plots than in the control plots. The mean diameter of the fine roots was not affected by N fertilization.

Conclusions

Our results suggest that C. japonica can respond to increased levels of soil inorganic N by increasing both the production and residence time of the fine roots. However, the effects of the changing soil N content are less evident for the phenology and morphology of the fine roots in C. japonica.     

Arbuscular mycorrhizal fungi affect seedling recruitment: a potential mechanism by which N deposition favors the dominance of grasses over forbs

Background and aims

Nitrogen (N) deposition usually alters plant community structure and reduces plant biodiversity in grasslands. Seedling recruitment is essential for maintaining species richness and determines plant community composition. Arbuscular mycorrhizal fungi (AMF) are widespread symbiotic fungi and could facilitate seedling establishment. Here we conducted an experiment to address whether the influence of AMF on seedling recruitment depends on N addition and plant species.

Methods

Leymus chinensis were cultivated for 5 months in the microcosms that were inoculated with or without AMF at five N addition rates. Seeds of three main species (two C₃ grasses and one non-N₂-fixing forb) of the Eurasian steppe were sown to the 5-month-old microcosms. Seedling establishment was estimated by shoot biomass, N and P contents 7 weeks after seedling germination.

Results

AMF promoted seedlings recruitment of two C₃ grasses at addition rates above 0.5 g N m^?2. In contrast, seedling recruitment of the non-N₂-fixing forb was increased by AMF at addition rates below 0.5 g N m^?2 but was decreased above 2.5 g N m^?2.

Conclusions

These results partly explain why N addition favored the dominance of grasses over forbs in perennial grassland communities. Our study indicates that AMF have the potential to influence plant community composition by mediating revegetation in the face of N deposition.     

Biogenic ethylene promotes seedling emergence from the sediment seed bank in an ephemeral tropical rock pool habitat

Background and aims

Ethylene has been increasingly implicated as a regulatory mechanism in plant germination, growth, and development, and is produced from the sediments of freshwater habitats. In this paper, we analyse the production and origin of ethylene from ephemeral freshwater rock pool sediments, and explore the role of ethylene in regulating seedling emergence from the seed bank.

Methods

The production of ethylene from rock pool sediments subjected to variable moisture content and antibiotic treatments was assessed through gas chromatography, and the role of ethylene in regulating seedling emergence was determined by seedling emergence assays and seed germination experiments.

Results

Biogenic ethylene production from rock pool sediments occurred rapidly (3–6 h) following inundation, with the majority of seedling emergence occurring between 36 and 72 h. Inoculation of sediments with streptomycin and amphotericin B resulted in significantly reduced ethylene production (up to 60 % and 84 % respectively), and completely inhibited seedling emergence. Additionally, the exposure of dormant seeds to ethylene resulted in significantly increased seed germination percentage in five out of six rock pool species.

Conclusions

Biogenic ethylene production may play an important role in regulating seed dormancy and the timing of seedling emergence from the sediment seed bank following inundation events in rock pools and other freshwater aquatic communities.     

Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China

Main conclusion

Whole-genome re-sequencing of weedy rice from southern China reveals that weedy rice can originate from hybridization of domesticated indica and japonica rice.

Abstract

Weedy rice (Oryza sativa f. spontanea Rosh.), which harbors phenotypes of both wild and domesticated rice, has become one of the most notorious weeds in rice fields worldwide. While its formation is poorly understood, massive amounts of rice genomic data may provide new insights into this issue. In this study, we determined genomes of three weedy rice samples from the lower Yangtze region, China, and investigated their phylogenetics, population structure and chromosomal admixture patterns. The phylogenetic tree and principle component analysis based on 46,005 SNPs with 126 other Oryza accessions suggested that the three weedy rice accessions were intermediate between japonica and indica rice. An ancestry inference study further demonstrated that weedy rice had two dominant genomic components (temperate japonica and indica). This strongly suggests that weedy rice originated from indica-japonica hybridization. Furthermore, 22,443 novel fixed single nucleotide polymorphisms were detected in the weedy genomes and could have been generated after indica-japonica hybridization for environmental adaptation.     

Does dormancy protect seeds against attack by the pathogenic fungus <Emphasis Type="Italic">Fusarium tricinctum</Emphasis> in a semiarid grassland of Northwest China?

Aims

Soil fungal pathogens can result in the failure of seedling establishment, but the effects of fungicide applications on seed/seedling survival have differed among studies. We assumed that the variation may relate to seed dormancy/germination characteristics and hypothesized that nondormant germinating seeds are more likely to be killed by fungal pathogens than dormant seeds.

Methods

Dormant and nondormant seeds of Stipa bungeana and Lespedeza davurica were inoculated with a pathogenic fungus Fusarium tricinctum under laboratory and field conditions. The outcomes of seed/seedling fate and other parameters were evaluated.

Results

In the laboratory, nondormant seeds inoculated with F. tricinctum developed white tufts of mycelium on the radicles of germinating seeds causing them to quickly die, but dormant seeds remained intact. In contrast, in the field inoculation with F. tricinctum did not cause higher mortality of nondormant than dormant seeds but resulted in higher percentages of seedling death before they emerged from soil than the controls.

Conclusions

Our results suggest that dormancy protects seeds from being attacked by some pathogens by preventing germination, but the protection is lost once germination has commenced. Further study involving various plant species with more seeds is needed to assess the generality of this pathogen-seed interaction hypothesis.