Relative importance of tree genetics and microhabitat on macrofungal biodiversity on coarse woody debris

Understanding the contribution of genetic variation within foundation species to community-level pattern and diversity represents the cornerstone of the developing field of community genetics. We assessed the relative importance of intraspecific genetic variation, spatial variation within a forest and microhabitat variation on a macrofungal decay community developing on logs of the Australian forest tree, Eucalyptus globulus. Uniform logs were harvested from trees from eight geographic races of E. globulus growing in a 15-year-old genetic trial. Logs were placed as designed grids within a native E. globulus forest and after 3 years of natural colonisation the presence of 62 macrofungal taxa were recorded from eight microhabitats on each log. The key factor found to drive macrofungal distribution and biodiversity on structurally uniform coarse woody debris was log-microhabitat, explaining 42% of the total variation in richness. Differences between log-microhabitats appeared to be due to variation in aspect, substrate (bark vs wood) and area/time of exposure to colonisation. This findings demonstrates the importance of considering fine-scale (within substrate) variation in the conservation and management of macrofungal biodiversity, an area that has received little previous attention. While a number of recent studies have demonstrated that the genetics of foundation tree species can influence dependent communities, this was not found to be the case for the early log decay community associated with E. globulus. Despite genetic variation in wood and bark properties existing within this species, there was no significant effect of tree genetics on macrofungal community richness or composition. This finding highlights the variation that may exist among guilds of organisms in their response to genetic variation within foundation species, an important consideration in a promising new area of research.     

How future climate and tree distribution changes shape the biodiversity of macrofungi across Europe

Aim

Climate change is affecting biodiversity at an accelerating rate. Despite the importance of fungi in ecosystems in general, and in the global carbon and nitrogen cycle in particular, there is little research on the response of fungi to climate change compared with plants and animals. Earlier studies show that climatic factors and tree species are key determinants of macrofungal diversity and distribution at large spatial scales. However, our knowledge of how climate change will affect macrofungal diversity and distribution in the future remains poorly understood.

Location

Europe.

Methods

Using openly available occurrence data of 1845 macrofungal species from eight European countries (i.e. Norway, Sweden, Finland, Denmark, Netherlands, Germany, France and Spain), we built ensemble species distribution models to predict macrofungal response to climate change alone and combined climate and tree distribution change under the IPCC special report on 2080 emissions scenarios (SRES A2 and B2).

Results

Considering climate change alone, we predict that about 77% (74.1%–80.7%) of the modelled species will expand their distribution range, and around 57% (56.1%–58.4%) of the modelled area will have an increase in macrofungal species richness. However, when considering the combined climate and tree species distribution change, only 50% (50%–50.9%) of the species are predicted to expand their distribution range and 49% (47.4%–51.1%) of the modelled area will experience an increase in macrofungal species richness.

Main Conclusions

Overall, our models projected that large areas would exhibit increased macrofungal species richness under future climate change. However, tree species distribution might play a restrictive role in the future distributional shifts of macrofungi. In addition, macrofungal responses appear heterogeneous, varying among species and regions. Our findings highlight the importance of including tree species in the projection of climate change impacts on the macrofungal diversity and distribution on a continental scale.     

Diversity and ecological distribution of macrofungi in the Laojun Mountain region,southwestern China

Surveys of the macrofungi associated with eight different vegetation types in the Laojun Mountain region of southwestern China yielded approximately 520 species belonging to 175 genera. Species richness and diversity were highest in mixed conifer and broadleaf forests and deciduous broadleaf forests. In typical forests of temperate regions of the world, there are five dominant genera of ectomycorrhizal macrofungi. The distribution patterns of species in these genera for the different vegetation types indicate that they are able to associate with a wide variety of different trees. Analysis of data for common macrofungal species and taxonomic similarity of the communities present in the eight vegetation types suggest that the greater the differences in the plant species that comprise the vegetation, the less similar are the common macrofungal species associated with the most common host plants. These same data also show that some species of macrofungi occur only in one or two vegetation types. There were 156 species of edible fungi recorded from the different vegetation types, and these fungi appear to be abundant in the Laojun Mountain region. At different positions along the elevation gradient, positive correlations existed with respect to the relationship between species richness and diversity, and the general trend was for macrofungal species richness and diversity to decrease with increasing elevation, with the numbers of species recorded being significantly lower at the very highest elevation. The relative dominance of certain taxa in the assemblage of species present was found to increase with increasing elevation, and variation in the evenness component of diversity was slight. As such, the differences in dominance and evenness were also not significant (P > 0.05). Macrofungal species richness was slightly more diverse on shaded slopes than on more exposed (sunny) slopes, and the differences in species diversity, dominance and evenness were relatively minor. This suggests that slope aspect may only weakly influence the distribution of macrofungal species in the Laojun Mountain region.     

西藏东南高寒森林大型真菌多样性与植被及环境的关系

通过对西藏东南高寒森林地区3个样地的9个样方两年内较为系统的调查,研究了大型真菌多样性及其与植被类型和大型真菌发生的其他诸多因素之间的关系.基于不同样方物种种类的样方层序聚类分析表明大型真菌的物种发生受植被类型影响较大.多样性指数分析表明急尖长苞冷杉林内的物种丰富度指数和多样性指数大于青冈树和落叶松混交林,后者大于青冈林.应用典范对应分析研究不同植被类型大型真菌物种发生和环境因素的关系,结果表明大型真菌物种的发生受不同环境因子的驱动,其发生是植被类型和环境因素共同作用的结果.     

Macrofungal diversity and community ecology in mature and regrowth wet eucalypt forest in Tasmania: A multivariate study

Abstract The biodiversity of macrofungi in mature and young regrowth Tasmanian wet forests is described at the species level and at the community level. The macrofungal communities studied were much more species‐rich than their vascular plant counterparts, with the total number of macrofungal taxa outnumbering vascular plants by four to one. This ratio applied in both mature and young regrowth forest sites. Some 242 taxa of macrofungi were recorded, of which 132 were identified to species level, the remainder to species groups or higher taxa. Distinct communities could be discerned from multivariate analysis (ordination and classification) of vascular plant and macrofungal data from the mature and regrowth sites. The two vascular plant communities had different fire histories, and this difference is also assumed to account for the separation of the macrofungal communities of the two forest types. There was generally a high level of congruence between the vascular plant and the macrofungal communities. However, one young regrowth site, which was relatively close to the mature sites in the ordination space for the analysis of vascular plants, was distant from the mature forest sites for the analysis of macrofungi. Another regrowth site, which had experienced wildfire rather than silvicultural regeneration, clustered with mature sites for some analyses of the macrofungal assemblage. Variation in the macrofungal communities was correlated with a different set of the measured environmental variables than was variation in the vascular plant communities. Mature and young regrowth forests were found to have distinctly different macrofungal floras, with approximately 40% of the taxa in each forest type being restricted to that type of site. Suitable indicator taxa (restricted or preferential to particular forest types) for use in further studies are suggested.     

Global diversity and distribution of macrofungi

Data on macrofungal diversity and distribution patterns were compiled for major geographical regions of the world. Macrofungi are defined here to include ascomycetes and basidiomycetes with large, easily observed spore-bearing structures that form above or below ground. Each coauthor either provided data on a particular taxonomic group of macrofungi or information on the macrofungi of a specific geographic area. We then employed a meta-analysis to investigate species overlaps between areas, levels of endemism, centers of diversity, and estimated percent of species known for each taxonomic group for each geographic area and for the combined macrofungal data set. Thus, the study provides both a meta-analysis of current data and a gap assessment to help identify research needs. In all, 21,679 names of macrofungi were compiled. The percentage of unique names for each region ranged from 37% for temperate Asia to 72% for Australasia. Approximately 35,000 macrofungal species were estimated to be “unknown” by the contributing authors. This would give an estimated total of 56,679 macrofungi. Our compiled species list does not include data from most of S.E. Europe, Africa, western Asia, or tropical eastern Asia. Even so, combining our list of names with the estimates from contributing authors is in line with our calculated estimate of between 53,000 and 110,000 macrofungal species derived using plant/macrofungal species ratio data. The estimates developed in this study are consistent with a hypothesis of high overall fungal species diversity.     

Richness of ancient forest plant species indicates suitable habitats for macrofungi

Macrofungal species richness generally increases with forest continuity as does the richness of so-called ancient forest plant species (AFS). Based on this assumption, we examined the ability of AFS to indicate macrofungal diversity in six study areas covering a range of elevations and environments in the Czech Republic. In total, we used data from 106 sampling plots (2,500 m² each) distributed over six types of forest stands reflecting different intensities and temporal stages of forest management. Species composition of vascular plants and macrofungi was recorded by a single inventory and regular 2-year monitoring, respectively. In total, we found 71 AFS and 1,413 macrofungal species, of which 150 were red-listed macrofungal species. We documented that AFS show potential for being used in the prediction of macrofungi species richness, including endangered species, at the local scale (α-diversity). Additionally, we found significant differences in macrofungal species richness depending on study area and type of forest management, which did not, however, derogate the effect of AFS. Spatial congruence between species composition of AFS and macrofungi communities (β-diversity) increased with forest age and decreased with intensity of forest management. If we consider the simplicity of monitoring AFS in comparison to regular monitoring of macrofungi, we found a widely usable tool for estimating macrofungal diversity in all dominant types of managed forest in central Europe. However, we should be aware of the limited ability of AFS to capture macrofungal diversity across a broader spatial context (γ-diversity), especially in areas with a low diversity of AFS.     

Quantitative morphological variation inTetramolopium (Asteraceae) in Hawaii and the Cook Islands

Multivariate analyses of quantitative characters were undertaken to examine the pattern of variation resulting from adaptive radiation ofTetramolopium in Hawaii and to investigate the systematics of an undescribed species in the Cook Islands and a group of populations of uncertain affinity on Kalaupapa Peninsula in Hawaii. Taxa differentiated on quantitative characters in the absence of qualitative characters. Differentiation was observed in multiple characters which could be organized into a few principal components. The analyses supported the species rank of the Cook Islands plants. The relationship of the Kalaupapa Peninsula populations to the rest of the taxa needs further study.     

Macrofungal diversity and ecology in two Mediterranean forest ecosystems

The macrofungal species richness and community assemblages in Italian native woodlands of oaks and Carpinus betulus and non-native woodlands of Pinus spp., Cupressus sempervirens and Eucalyptus camaldulensis were examined through the collection of basidiomata and ascomata over 1 year. The sampling in Collestrada (Umbria) and Pizzo Manolfo (Sicily) forests revealed 216 species of macrofungi. The results indicate differences in macromycete richness and diversity patterns between the two sites. The dominant tree species of the two sites were different; thus, the Collestrada forests had higher mycorrhizal species richness, while the Pizzo Manolfo forest had a higher relative number of saprotroph macrofungi. The macrofungal community of Quercus frainetto woodland from Collestrada forest was richer and more diverse than the other site's woodland types. This study highlighted that both Collestrada and Pizzo Manolfo forests provide a habitat for diverse macrofungal species, not in the least ectomycorrhizal species.     

Genetic control of natural variation in Arabidopsis glucosinolate accumulation

Glucosinolates are biologically active secondary metabolites of the Brassicaceae and related plant families that influence plant/insect interactions. Specific glucosinolates can act as feeding deterrents or stimulants, depending upon the insect species. Hence, natural selection might favor the presence of diverse glucosinolate profiles within a given species. We determined quantitative and qualitative variation in glucosinolates in the leaves and seeds of 39 Arabidopsis ecotypes. We identified 34 different glucosinolates, of which the majority are chain-elongated compounds derived from methionine. Polymorphism at only five loci was sufficient to generate 14 qualitatitvely different leaf glucosinolate profiles. Thus, there appears to be a modular genetic system regulating glucosinolate profiles in Arabidopsis. This system allows the rapid generation of new glucosinolate combinations in response to changing herbivory or other selective pressures. In addition to the qualitative variation in glucosinolate profiles, we found a nearly 20-fold difference in the quantity of total aliphatic glucosinolates and were able to identify a single locus that controls nearly three-quarters of this variation.     

Developmental responses of subdominant grassland species to current weather conditions and their relevance for annual vegetation changes

Year-to-year vegetation changes have been observed many times in temperate grasslands. Ordinarily, variation in annual weather patterns is considered responsible for these changes. However, the exact mechanisms of vegetation dynamics have seldom been studied. In order to analyse the direct response of plants to distinct weather situations, the shoot growth rates of three subdominant grassland species were determined during three growing seasons and tested for significant relationships to meteorological variables measured simultaneously in the study site. Half of the shoots grew in the natural community with competition from neighbouring plants. For the other half, above-ground interference was avoided by regularly clipping the surrounding vegetation. The results lead to the distinction of three different impact patterns of current weather conditions on the growth of subdominant grassland species: (i) As a consequence of extraordinary weather conditions, e.g. lasting periods of drought in the summer, plants die completely or partially or pass into secondary dormancy. Such weather situations may cause quantitative or even qualitative changes in species composition by altering the density and frequency of the species involved. (ii) Major divergences from average weather conditions, such as unusually warm or cold periods in the spring, affect the growth of subdominant species and may therefore lead to quantitative annual variation of the species involved in terms of cover or biomass. (iii) Average weather conditions with slight deviations from the long-term means of the weather variables do not produce detectable direct growth responses and therefore average weather conditions are not key factors for year-to-year variations in the quantitative or qualitative performance of subdominant species.     

Constraint and opportunity: the genetic basis and evolution of modularity in the cichlid mandible

Modular variation, whereby the relative degree of connectivity varies within a system, is thought to evolve through a process of selection that favors the integration of certain traits and the decoupling of others. In this way, modularity may facilitate the pace of evolution and determine evolvability. Alternatively, conserved patterns of modularity may act to constrain the rate and direction of evolution by preventing certain functions from evolving. A comprehensive understanding of the potential interplay between these phenomena will require knowledge of the inheritance and the genetic basis of modularity. Here we explore these ideas in the cichlid mandible by investigating patterns of modularity at the clade and species levels and through the introduction of a new approach, the individual level. Specifically, we assessed patterns of covariation in Lake Malawi cichlid species that employ alternate "biting" and "suction-feeding" modes of feeding and in a hybrid cross between these two ecotypes. Across the suction-feeding clade, patterns of modularity were largely conserved and reflected a functionally based pattern. In contrast, the biting species displayed a pattern of modularity that more closely matched developmental modules. The pattern of modularity present in our F2 population was very similar to the pattern exhibited by the biter, suggesting a role for dominant inheritance. We demonstrate that our individual-level metric of modularity (IMM) is a valid quantitative trait that has a nonlinear relationship with shape. IMMs for each model were used as quantitative characters to map quantitative trait loci (QTL) that underlie modularity. Our QTL analysis offers new insights into the genetic basis of modularity in these fishes that may eventually lead to the discovery of the genetic processes that delineate particular modules. In all, our findings suggest that modularity is both a constraining and an evolvable force in cichlid evolution, as distinct patterns occur between species and variation exists among individuals.     

Epigeous macrofungal succession in the first five years following a wildfire in karri (Eucalyptus diversicolor) regrowth forest in Western Australia

Abstract Following a wildfire in 17–25‐year‐old regrowth karri (Eucalyptus diversicolor) forest in the southwest of Western Australia, plots were established in burnt and similarly aged unburnt forest to monitor the fruiting of macrofungi. Thirty‐six plots on 10 sites (five burnt, five unburnt) were surveyed over a 5‐year period. Plots were surveyed every 2 weeks in the macrofungal fruiting season (April to October) and monthly for the remainder of each year. A total of 332 species were recorded. Fire did not impact significantly on mean species richness. However, a distinct mycoflora was recorded on burnt sites, and species composition on burnt sites changed substantially for each year following the fire and after 5 years was still different from that on unburnt sites. Nineteen percent of species recorded were regarded as being present as a direct result of the fire. The study also demonstrated the variable nature of macrofungal sporophore production in the absence of disturbance and the importance of regular sampling. Five distinct succession groups of post‐fire fungi were recognized. The adaptive traits of post‐fire fungi in relation to fire and the management of fire for macrofungal diversity are discussed.     

北京地区大型真菌多样性分析

为明确北京地区大型真菌资源状况,以中国科学院菌物标本馆馆藏的京区标本和本研究组采自该地区的标本为材料,结合已报道的文献资料,经过对定名标本的物种名称进行系统整理,得到北京地区大型真菌记录867种,隶属于2门20目72科281属,其中食用菌294种,药用菌169种（包含食用兼药用菌69种）,毒菌56种。在全部大型真菌中,蘑菇科Agaricaceae、多孔菌科Polyporaceae、口蘑科Tricholomataceae和红菇科Russulaceae等24科拥有的物种占总物种数量的77.28%,这些科在该地区占有主导地位;红菇属Russula、蘑菇属Agaricus和丝盖伞属Inocybe等50个属的物种占总物种数量的60.21%,具有相对优势。大型真菌区系分布分析的结果表明,北京地区已发现的大型真菌主要为世界广泛分布的属。物种丰富度分析表明采自门头沟区的大型真菌的标本数和物种丰度最高,最能代表北京地区大型真菌物种的多样性;其他地区采集的标本数量显著减少,而且物种数和物种丰度均明显降低;特别是城区和近郊地区,由于适宜栖息地的丧失,大型真菌更是少见。     

Natural selection on light response curve parameters in the herbaceous annual, <Emphasis Type="Italic">Impatiens capensis</Emphasis>

We tested for genetic variation in light response curves and their acclimation to sun versus shade in recombinant inbred lines (RILs) of the annual species Impatiens capensis derived from a cross between sun and shade populations. We exposed replicates of 49 RILs to experimentally manipulated light levels (open versus shade) in a greenhouse and measured photosynthetic light response curves, height, biomass, and reproduction. Plants were taller in the shade treatment, but we were unable to detect differences between light treatments (i.e., acclimation) in the maximal rate of photosynthesis, the light compensation point, or the quantum efficiency of photosynthesis. Genotypic selection analyses indicated that higher maximal rates of carbon assimilation and higher light compensation points (typical of sun-acclimated light curves) were favored by natural selection in both light treatments. Thus, it appears that the pattern of selection on photosynthetic parameters may not depend on light environment in this species.M. Shane Heschel and John R. Stinchcombe contributed equally to the paper.     

Applications of self-organizing map for patterning macrofungal diversity of xerothermic swards

Macrofungal communities were investigated in four associations of xerothermic swards: Festucetum pallentis, Origano-Brachypodietum, Adonido-Brachypodietum pinnati and Diantho-Armerietum elongatae in a Jurassic area of the Częstochowa Upland (southern Poland). A total of 47 species were recorded. The self-organising map (SOM)—an unsupervised algorithm for artificial neural networks—was used to recognise patterns in the macrofungal communities of diverse xerothermic swards. Only two associations were mycologically similar: Origano-Brachypodietum and Adonido-Brachypodietum pinnati. Species with high and significant IndVal (the species indicator value) for each investigated phytocoenoses are presented. The presence of macrofungal species and the participation of indicator species were connected with habitat factors of plant associations, as documented by the IndVal application. In the least fertile phytocoenoses, macrofungal communities were poor with few indicator species. The more fertile phytocoenoses had richer and more varied communities of macrofungi with higher numbers of indicator species. The ordering methods applied in this study were very effective for analyzing the macrofungal communities existing in plant associations.     

新安江（新溪口段）浮游动物调查报告

本文通过对新安江（新溪口段）浮游动物组成的定性和定量研究,鉴定出浮游动物２８属４３种;初步探讨了该江段浮游动物的季节变化规律,并评价了水质营养状况。     

How robust are neural network models of stimulus generalization?

Artificial feed-forward neural networks are commonly used as a tool for modelling stimulus selection and animal signalling. A key finding of stimulus selection research has been generalization: if a given behaviour has been established to one stimulus, perceptually similar novel stimuli are likely to induce a similar response. Stimulus generalization, in feed-forward neural networks, automatically arises as a property of the network. This network property raises understandable concern regarding the sensitivity of the network to variation in its internal parameter values used in relation to its structure and to its training process. Researchers must have confidence that the predictions of their model follow from the underlying biology that they deliberately incorporated in the model, and not from often arbitrary choices about model implementation. We study how network training and parameter perturbations influence the qualitative and quantitative behaviour of a simple but general network. Specifically, for models of stimulus control we study the effect that parameter variation has on the shape of the generalization curves produced by the network. We show that certain network and training conditions produce undesirable artifacts that need to be avoided (or at least understood) when modelling stimulus selection.     

Phototoxicity of polyacetylenes to Cryptococcus laurentii

Isolates of Cryptococcus laurentii from leaves of Hawaiian species of Bidens were tested for photosensitivity to polyacetylenes from Bidens. Organisms from host plants with or without leaf acetylenes did not differ in their responses to the phototoxic compounds. Two methods were used to determine photosensitivity, a qualitative paper disc assay and a quantitative Titertek assay in which dose response curves for four polyacetylenes were prepared. The significance of pigmentation in phylloplane fungi is discussed.     

物种分布模型在大型真菌红色名录评估及保护中的应用: 以冬虫夏草为例

我国大型真菌资源丰富, 由于受气候变化和人类活动等的影响, 近年来很多物种受到不同程度的威胁, 亟待保护。红色名录评估是物种保护的第一步, 为有效保护我国大型真菌多样性, 2016年生态环境部和中国科学院联合启动中国大型真菌红色名录评估项目。合理的评估依赖于完善的物种地理分布、种群数量规模及其动态变化信息。大型真菌评估信息较少, 需要引入新的方法解决评估信息不足的问题。冬虫夏草(Ophiocordyceps sinensis)是一种重要的食药用菌, 具有较高的经济价值, 受到全世界的广泛关注, 评估信息相对充足, 此次被评为易危物种。利用物种分布模型对冬虫夏草未来分布区变化的预测在评估过程中发挥了重要作用。为了将物种分布模型分析方法引入大型真菌的受威胁等级评估, 本文以此前我们利用物种分布模型预测冬虫夏草的潜在分布区及其对气候变化响应的研究为例, 介绍了应用物种分布模型预测大型真菌的潜在分布区、未来气候变化情景下分布区变化趋势的方法和流程, 以及在应用中可能存在的问题和解决方案。通过本文的分析, 我们认为物种分布模型在大型真菌的红色名录评估和保护中具有重要的应用潜力, 值得推广应用。