The role of inorganic nutrients and herbivory in controlling microbioerosion of carbonate substratum

The effect of herbivore abundance and nutrients on microborer communities and their rates of bioerosion of Strombus gigas shells was studied using herbivore-exclusion cages and inorganic fertilizers at Glovers Reef, Belize. Microborers colonizing shells in each treatment were identified and their colonization rates were calculated from scanning electron microscopy of the boring casts. In all treatments the dominant microborer was the green alga Phaeophila sp. Cyanobacteria were most abundant within fertilized and fungi in unfertilized treatments. The highest microbioerosion rates and most distinctive microborer community were found on the treatment with both reduced herbivores and fertilization. All fertilized treatments had significantly higher bioerosion rates than unfertilized treatments. Treatments with macrograzer access had microbioerosion rates less than half the fertilized cages. Bioerosion rates in unfertilized treatments were lowest and not different with and without macrograzers. Consequently, increased nutrient concentrations on reefs have the potential to increase rates of microbioerosion and macrograzers can modify the composition and density of the microborer community.     

Role of atelomixis in replacement of phytoplankton assemblages in Dom Helvécio Lake, South-East Brazil

Scale and frequency of changes in a lake’s physical structure, light dynamics, and availability of nutrients are closely related to phytoplankton ecology. Since phytoplankton assemblages were first described, phytoplankton ecologists concluded that these assemblages provide insight into phytoplankton responses to environmental changes. Objectives of this study were to investigate ecology of phytoplankton during a complete hydrological cycle in the deepest natural lake in Brazil, Dom Helvécio, and to sort species into the list of assemblages, checking its accordance with environmental changes in a tropical system within the middle Rio Doce Lake district, South-East Brazil. Canonical Correspondence Analysis, t-test, Mann–Whitney U-test, and Kruskal–Wallis test were used to analyze climatological, environmental, and plankton data, which were obtained monthly in 2002. A new phytoplankton assemblage, N_A (atelomixis-dependent desmids), is suggested because atelomixis (robust movement of water occurring once a day) contributed to replacement of species in Dom Helvécio Lake. Stability of stratification, water chemistry, and composition of phytoplankton assemblages characterized two periods. The first period occurred in six rainy months (Jan–Mar and Oct–Dec) when the lake was stratified and phytoplankton was dominated by two assemblages: N_A and F. The second period occurred in six dry months (Apr–Sep) when the lake was nonstratified and phytoplankton was dominated by four assemblages: S2, X1, A, and L_O. Results suggest that phytoplankton in Dom Helvécio Lake was shaped by seasonal and daily changes of water temperature, even with its lower amplitude of variation within 2002 (El Niño year). These changes promoted water column stratification or mixing, reduced light, and increased nutrient availability. Temperature, therefore, is similarly important to phytoplankton ecology in tropical regions as it is in temperate ones. Sorting phytoplankton species into assemblages matched well with environmental changes and periods identified so it is also suggested that this can be further used as an appropriate tool to manage water quality when evaluating tropical lakes.     

Spatial and temporal dynamics of the steady-state phytoplankton assemblages in a temperate shallow hypertrophic lake (Lake Manyas,Turkey)

Spatial and temporal dynamics of phytoplankton biomass and species composition in the shallow hypertrophic Lake Manyas, Turkey, were studied biweekly from January 2003 to December 2004 to determine steady-state phases in phytoplankton assemblages. Steady-state phases were defined when one, two or three coexisting species contributed to at least 80% of the standing biomass for at least 2 weeks and during that time the total biomass did not change significantly. Ten steady-state phases were identified throughout the study peiod. During those periods, Achnanthes microcephala (Kützing) Cleve twice dominated the phytoplankton biomass alone and contributed to more than 50% of the total biomass in seven phases. Microcystis aeruginosa (Kützing) Kützing, Anabaena spiroides Klebahn, Cyclotella stylorum Brightwell, Pediastrum boryanum (Turpin) Meneghini and Phacus pusillus Lemmermann were also represented once in steady-state phytoplankton assemblages. A. microcephala was dominant usually during cold periods of the year, while M. aeruginosa and A. spiroides were usually dominant in warm seasons. The total number of species showed a clear decrease during steady-state phases at all stations. All stations were significantly different in terms of the measured physical and chemical parameters (P < 0.05) and phytoplankton biomass (F = 117, P < 0.05).     

Phytoplankton associations in a small hypertrophic fishpond in East Hungary during a change from bottom-up to top-down control

Phytoplankton species composition and abundance of a shallow hypertrophic fishpond (Mézeshegyi-tó, East Hungary) was studied for the period 1992–1995. The pond showed a pronounced algal periodicity. High-diversity phytoplankton assemblages occurred in spring and autumn. During the winter period, low diversity values were related either to stable community states, when K-strategist species dominated the plankton, or to a large bloom of r-strategist species. In summer, the stable environment led to low-diversity, high-biomass phytoplankton assemblages, dominated by Cylindrospermopsis raciborskii. At this time, the growth conditions for Cylindrospermopsiswere akin to those prevailing in a continuous fermentor. The overwhelming dominance of this species lasted for more than four months, during which time, the phytoplankton resembled that of one in the tropics. In August, 1993, an unsuccessful chemical treatment for reducing the algal bloom succeeded in killing the pond's entire population of fish. The large fish-stock comprised the planktivorous silver carp. Although the summer of 1994 was one of the warmest summers of this century, the expected Cylindrospermopsis bloom failed to develop probably because of a higher grazing pressure by large zooplankton. In spite of the fact that the temporal and spatial pattern of the phytoplankton is influenced principally by bottom-up effects, changes in cascading trophic interactions may also considerably influence the species composition and biomass.     

Long-term phytoplankton changes in an artificially divided,top-down manipulated humic lake

Lake Große Fuchskuhle (Brandenburg, Germany) is a naturally acidic bog lake that was artificially divided into four basins by large plastic curtains for biomanipulation experiments in 1990. Different numbers of perch were added to each compartment beginning in the spring of 1993. The species composition and abundance of phytoplankton, pH, nutrient concentrations, dissolved organic carbon (DOC) and chlorophyll a content were analyzed at regular intervals during 1991 and 1998. The division of the lake resulted in divergent developments in the physical and chemical environment of the compartments. This study compared the phytoplankton assemblages of the Northeast- (NE) and Southwest- (SW) basins which differed strongly in chemistry during the investigation period. Divergent developments in phytoplankton species composition in both basins can be explained by changes in physical and chemical conditions (bottom-up effects). Increased pH values and DOC concentrations probably favoured mass developments of the dinoflagellate Gymnodinium uberrimum since 1993, while increased nutrients (dissolved inorganic carbon, total nitrogen and especially total phosphorus) as well as further changes in pH and DOC led to the dominance of the raphidophyte Gonyostomum semen in 1998. This bloom was characterized by extreme biomasses of up to 143 mg l^–1 wet weight, corresponding with high chlorophyll a concentrations of up to 413 g l^–1 at the same time. In contrast, no significant relationship between experimental manipulations by piscivorous fish stocking (top-down effects) and phytoplankton biomass were observed.     

Origin of phytoplankton and the environmental factors governing the structure of microalgal communities in lowland streams

Information on the structure of microalgal assemblages in the epiphyton and epilithon is necessary to understand the origin of phytoplankton in lowland rivers. To this end, we carried out concurrent investigations on phytoplankton, epiphyton and epilithon in 18 reaches of three Estonian rivers during the midsummers of 2002 and 2003. A total of 251 taxa was recorded, of which 192 were epiphyton species, 158 were epilithon species and 150 were phytoplankton species. Canonical correspondence analysis (CCA), based on the 31 most abundant taxa, indicated differences in the structure of the algal assemblages between the different biotopes (phytoplankton, epiphyton and epilithon) as well as between the studied rivers. The composition of the phytoplankton clearly differed from that of the other biotopes, with prevailing small flagellates, a chrysophyte (Synura uvella) and cryptophytes (Rhodomonas lacustris and Cryptomonas erosa). The epiphyton was characterized by a large number of diatoms, while the epilithic community contained filamentous cyanobacteria (Phormidium tergestinum and Planktolyngya sp.) and a green alga (Stigeoclonium tenue) in addition to diatoms. Based on redundancy analysis (RDA), phosphorous was the most relevant parameter determining the distribution of species in the phytoplankton assemblages. Shading by trees on the river bank, dissolved oxygen concentration and water temperature as well as river width determined the distribution of species in the epiphyton. The data set on the epilithon did not reveal any significant relationships between species distribution and the measured environmental parameters.     

The plankton community of Lake Matano: factors regulating plankton composition and relative abundance in an ancient,tropical lake of Indonesia

Recent evidence reveals that food webs within the Malili Lakes, Sulawesi, Indonesia, support community assemblages that are made up primarily of endemic species. It has been suggested that many of the species radiations, as well as the paucity of cosmopolitan species in the lakes, are related to resource limitation. In order to substantiate the possibility that resource limitation is playing such an important role, a study of the phytoplankton and zooplankton communities of Lake Matano was implemented between 2000 and 2004. We determined species diversity, relative abundances, size ranges, and total biomass for the phytoplankton and zooplankton, including the distribution of ovigerous individuals throughout the epilimnion of Lake Matano in three field seasons. The phytoplankton community exhibited very low biomass (<15 μg l^?1) and species richness was depressed. The zooplankton assemblage was also limited in biomass (2.5 mg l^?1) and consisted only of three taxa including the endemic calanoid Eodiaptomus wolterecki var. matanensis, the endemic cyclopoid, Tropocyclops matanensis and the rotifer Horaella brehmi. Zooplankton were very small (<600 μm body length), and spatial habitat partitioning was observed, with Tropocylops being confined to below 80 m, while rotifer and calanoid species were consistently observed above 80 m. Less than 0.1% of the calanoid copepods in each year were egg-bearing, suggesting very low population turnover rates. It was concluded that chemical factors as opposed to physical or biological processes were regulating the observed very low standing crops of phytoplankton which in turn supports a very minimal zooplankton community restricted in both species composition and abundance. As chemical factors are a function of the catchment basin of Lake Matano, it is predicted that resource limitation has long played an important role in shaping the unique endemic assemblages currently observed in the food web of the lake.     

Effects of the diatom-Emiliana huxleyi succession on photosynthesis, calcification and carbon metabolism by size-fractioned phytoplankton

Changes in the species composition, photosynthesis, calcification and size-fractionated carbon metabolism by natural phytoplankton assemblages were monitored in three mesocosms under different nutrient conditions during May 1993. In the 3 enclosures, the decline of the diatom-dominated assemblages was followed by the development of a bloom of the coccolithoporid Emiliania huxleyi. Highest growth of E. huxleyi was observed in the mesocosm with a high N : P ratio, suggesting this species is a good competitor at low phosphate concentrations. The transition from diatom- to E. huxleyi-dominated assemblages brought about a sharp reduction of the phytoplankton standing stock and carbon-specific photosynthetic rate. The relative contribution of the smaller size fraction to total photosynthesis increased as the succession progressed. Calcification rate and E. huxleyi cell-specified calcite production were highest during the early stages of development of the E. huxleyi bloom. Distinct changes in the patterns of ¹⁴C allocation into biomolecules were noticed during the diatom-E. huxleyi succession. The diatom-dominated assemblage showed high relative ¹⁴C incorporation into low molecular weight metabolites (LMWM), whereas proteins and, specially, lipids accounted for the largest proportion of carbon incorporation in the E. huxleyi bloom. The patterns of photoassimilated carbon metabolism proved to be strongly dependent on cellular size, as protein relative synthesis was significantly higher in the smaller than in the larger size fraction, irrespective of the nutrient regime and the successional stage. These results are discussed in relation to the ecological and physiological features of small phytoplankton.     

The effects of selected physical and chemical factors on attached diatoms in the Uintah Basin of Utah,U.S.A.

The relationships of diatom species to selected physical and chemical parameters in the streams of the Uintah Basin of Utah were studied through four seasons of 1977–1978. Niche center gradient analysis, cluster analysis and correlation analysis were performed.Achnanthes minutissima, Cyclotella meneghiniana, Cymbella minuta var.latens, Fragilaria capucina, andNavicula secreta var.apiculata appear to be indicator species of high or low levels of certain water quality parameters. Several other species also showed meaningful relationships to selected physical and chemical parameters.     

Seasonal dynamics of zooplankton and grazing impact of microzooplankton on phytoplankton in Sanmen Bay, China

The species composition, biomass, abundance and species diversity of zooplankton were determined for samples collected from 12 stations in Sanmen Bay, China, in four cruises from August 2002 to May 2003. Growth of phytoplankton and grazing rates of microzooplankton were measured using the dilution technique. The spatial and temporal variation of zooplankton and its relationship with environmental factors were also analyzed. The results showed that a total of 89 species of zooplankton belonging to 67 genera and 16 groups of pelagic larvae were found in Sanmen Bay. The coastal low-saline species was the dominant ecotype in the study area, and the dominant species were Calanus sinicus, Labidocera euchaeta, Tortanus derjugini, Acartia pacifica, Pseudeuphausia sinica and Sagitta bedoti. Maximum biomass was recorded in August, followed by November and May, and the lowest biomass was recorded in February. Similarly, the highest abundance of zooplankton was observed in August, followed by May, November, and February. Grazing pressure of microzooplankton on phytoplankton in Sanmen Bay existed throughout the year, although the grazing rate of microzooplankton on phytoplankton varied with the season. Estimates for growth rate of phytoplankton ranged from 0.25 d⁻¹ to 0.89 d⁻¹, whereas grazing rate of microzooplankton ranged between 0.18 d⁻¹ and 0.68 d⁻¹ in different seasons. The growth rate of phytoplankton exceeded the grazing rate of microzooplankton in all the seasons. Grazing pressure of microzooplankton on phytoplankton ranged from 16.1% d⁻¹ to 49.1% d⁻¹, and the grazing pressure of microzooplankton on primary production of phytoplankton ranged from 58.3% d⁻¹ to 83.6% d⁻¹ in different seasons.     

MERCURY INHIBITION ON PRIMARY PRODUCTIVITY USING LARGE VOLUME PLASTIC CHAMBERS IN SITU1

Approximately 6000 l of lake water was suspended in large, clear plastic chambers in Lake Powell, Arizona. The chambers were monitored during 24 h incubation periods in the spring and summer 1974 and 1975. Physico-chemical differences between the natural lake system and within the experimental chambers were negligible. Experimental mercury concentrations ranging from < 0.02 to 1.25 ppm were added to the chambers to determine the effect of elevated Hg concentrations on in situ primary production. Mercury concentrations were monitored in the water column of each chamber during each 24 h incubation period to determine absolute concentrations following reduction through adsorption, absorption and vaporization. At least a 40% reduction in photosynthetic activity occurred at Hg concentrations as low as 0.06 ppm. A toxic Hg threshold concentration of 0.06 ppm was demonstrated for the summer phytoplankton assemblage, but a distinct threshold concentration was absent for the spring diatom assemblage. Differences in spring and summer phytoplankton populations may suggest subtle differences in Hg sensitivity between phytoplankton assemblages in combination with temperature acting on total community metabolism.     

Positive and negative effects of mesograzers on early‐colonizing species in an intertidal rocky‐shore community

The ecological consequences of human‐driven overexploitation and loss of keystone consumers are still unclear. In intertidal rocky shores over the world, the decrease of keystone macrograzers has resulted in an increase in the dominance of herbivores with smaller body (i.e., “mesograzers”), which could potentially alter community assembly and structure. Here, we experimentally tested whether mesograzers affect the structure of rocky intertidal communities during the period of early colonization after the occurrence of a disturbance. A manipulative field experiment was conducted to exclude mesograzers (i.e., juvenile chitons, small snails, amphipods, and juvenile limpets) from experimental areas in an ecosystem characterized by the overexploitation of keystone macrograzers and predators. The results of multivariate analyses suggest that mesograzers had significant effects on intertidal community structure through negative and positive effects on species abundances. Mesograzers had negative effects on filamentous algae, but positive effects on opportunistic foliose algae and barnacles. Probably, mesograzers indirectly favored the colonization of barnacles and foliose algae by removing preemptive competitors, as previously shown for other meso‐ and macrograzer species. These results strongly support the idea that small herbivores exert a firm controlling effect on the assembly process of natural communities. Therefore, changes in functional roles of top‐down controllers might have significant implications for the structure of intertidal communities.     

The effects of the flood cycle on the diversity and composition of the phytoplankton community of a seasonally flooded Ramsar wetland in Bangladesh

Freshwater wetlands in Bangladesh are strongly influenced by the monsoons and the annual flood cycle has measurable impacts on the abiotic and biotic components of these ecosystems. The northeastern Haor Basin of Bangladesh is particularly rich in seasonally flooded freshwater wetlands that support a wide diversity of flora and fauna. These wetlands are of great importance to the local economy due to the abundance of rich floodplain fisheries. Little is known about the phytoplankton communities of these wetlands that are known to be linked with zooplankton and fish productivity. We investigated the seasonal variation in the diversity and abundance of phytoplankton assemblages in Tanguar Haor, a Ramsar wetland in northeastern Bangladesh during the period of inundation (June–December). A total of 107 genera of phytoplankton representing five classes were recorded. Blooms of Microcystis dominated the phytoplankton community throughout the study period but were particularly acute during the early part of the high water period. Among the Bacillariophyceae, Melosira was the most dominant, reaching bloom proportions early in the high water period. Factor analysis of physicochemical variables separated the flood cycle into four distinct periods: early high water, mid high water, late high water and low water periods. Phase of the flood cycle, nutrient availability, the physicochemical variables combined with the dominance of Microcystis seemed to be important in controlling the abundance, diversity and dynamics of the phytoplankton genera. The abundance of genera of desmids and some Bacillariophyceae is indicative of the relatively unpolluted conditions of Tanguar Haor.     

Desmids of the Staurastrum tetracerum-group from a eutrophic lake in mid-wales

Seven desmids have been found in the phytoplankton of a markedly eutrophic lake in mid Wales. All have grown well in laboratory cultures and so an opportunity has been provided to explore the taxonomy and morphological variability of four species, Staurastrum tetracerum, S. irregulare, S. bibrachiatum and S. pseudotetracerum, previously described inadequately. Suggestions for nomenclatural changes are made for S. irregulare and the very variable S. bibrachiatum, which is recorded from the British Isles for the first time. Reasons for the occurrence of the seven desmid species in the eutrophic lake plankton are discussed.     

Physical factors and dissolved reactive silica affect phytoplankton community structure and dynamics in a lowland eutrophic river (Po river,Italy)

We tested the hypothesis that species composition and persistence of phytoplankton communities in nutrient rich lowland rivers depends mainly on physical factors. The study aimed to analyse the effects of water discharge, temperature and chemistry on phytoplankton dynamic and species composition in the lowland reach of the eutrophic Po river (Italy). Both taxonomical and morpho-functional methods were used. True planktonic and tychoplanktic (i.e. detached taxa of benthic origin that remain in suspension) species were found, among which only a few taxa and functional groups prevailed. Diatoms were the most abundant, with a clear dominance of species either sensitive to the onset of water stratification or well adapted to turbid waters. Phytoplankton abundance, biomass and chlorophyll-a followed similar trends, attaining the highest values in summer, at low discharge rates. Correlation and multivariate analysis revealed that the development of a stable phytoplankton community was mainly controlled by water discharge rates. Namely, changes in water flow rates induced major variations in the community structure. The seasonal succession of phytoplankton assemblages was also related to water temperature and dissolved reactive silica availability to some extent overlapping flow effects.     

QUANTIFICATION OF THE RELATIVE ABUNDANCE OF THE TOXIC DINOFLAGELLATE,KARENIA BREVIS (DINOPHYTA), USING UNIQUE PHOTOPIGMENTS1

Diagnostic photopigment analysis is a useful tool for determining the presence and relative abundance of algal groups in natural phytoplankton assemblages. This approach is especially useful when a genus has a unique photopigment composition. The toxic dinoflagellate Karenia brevis (Davis) G. Hansen & Moestrup comb. nov. shares the diagnostic pigment gyroxanthin‐diester with only a few other dinoflagellates and lacks peridinin, one of the major diagnostic pigments of most dinoflagellate species. In this study, measurements of gyroxanthin‐diester and other diagnostic pigments of K. brevis were incorporated into the initial pigment ratio matrix of the chemical taxonomy program (CHEMTAX) to resolve the relative contribution of K. brevis biomass in mixed estuarine phytoplankton assemblages from Florida and Galveston Bay, Texas. The phytoplankton community composition of the bloom in Galveston Bay was calculated based on cell enumerations and biovolumetric measurements in addition to chl a‐specific photopigment estimates of biomass (HPLC and CHEMTAX). The CHEMTAX and biovolume estimates of the phytoplankton community structure were not significantly different and suggest that the HPLC–CHEMTAX approach provides reasonable estimates of K. brevis biomass in natural assemblages. The gyroxanthin‐diester content per cell of K. brevis from Galveston Bay was significantly higher than in K. brevis collected from the west coast of Florida. This pigment‐based approach provides a useful tool for resolving spatiotemporal distributions of phytoplankton in the presence of K. brevis blooms, when an appropriate initial ratio matrix is applied.     

Seasonality in river phytoplankton: multivariate analyses of data from the Ohio River and six Kentucky tributaries

Two years of physical/chemical and algal abundance data obtained from national Stream-Quality Accounting Network records of 10 river sites in Kentucky USA (4 Ohio River sites and 6 Ohio River tributaries) were analyzed to determine how seasonal changes in river phytoplankton related to changes in physical and chemical parameters. Phytoplankton assemblages differed among rivers as a function of drainage basin characteristics, but exhibited common seasonal changes related to temporal variation in the physical/chemical environment. Distinct shifts in algal dominance were identified between spring (March, April), late summer (July, August, September), and transitional (May, June, November) periods in the 10 systems. Nine common algal genera were found to differ in their response to changes in physical or chemical parameters. Abundances of Anacystis, Oscillatoria, Scenedesmus, and Melosira were strongly positively correlated with temperature while Chlamydomonas and Navicula abundances were inversely related to temperature. Other physical/chemical factors that were significantly positively ( + ) or negatively ( - ) correlated with algal abundances included discharge and alkalinity (Oscillatoria, +), pH CChlamydomonas and Cyclotella, (both + ), turbidity (Anacystis, \s- ; Navicula + ), silica (Cyclotella, - ), and ammonium/organic N (Anacystis, -). Genera within the same algal division exhibited different seasonal patterns and responded to different physical/chemical parameters.     

Water Quality and Biotic Community of a Highland Stream under the Influence of a Eutrophic Fishpond

The influence of the fishpond on the chemical composition of the stream was mainly demonstrated by a higher concentration of organic matter and total phosphorus. Altogether, 128 species of algae and cyanobacteria were recorded in the stream. The species richness of phytobenthos per site was very similar. We observed the presence of typical phytoplankton species among the phytobenthos assemblages. Cyanobacteria species (Woronichinia naegeliana) were particularly dominant in the phytoplankton of the fishpond in autumn. Altogether, we identified 164 taxa of benthic macroinvertebrates in running waters of the stream. The structure of macrozoobenthos communities from all localities of the stream indicated good water quality and a low influence of environmental stressors with no negative effects of the fishpond. In total, six fish species were registered in all profiles. The condition of the fish population was mainly influenced by the fishery management of the stream (stocking, angling). Generally, the influence of the discharge water from the fishpond was recognizable in small changes in both chemical and biological variables of the stream. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Spatial and temporal variations in moss-inhabiting summer diatom communities from Potter Peninsula (King George Island, Antarctica)

This work represents the first analysis of the spatial and temporal variations in the diversity and community structure of diatoms associated with mosses, either dry or wet, sampled during the summer season from the littoral zone of three ponds in Potter Peninsula (King George Island, South Shetland Islands). It also seeks to explore the effect moisture content in the mosses can have on the structure of the diatom assemblages. The ponds approximately had the same number of species, and differences were found between the dry and wet sampling points. The same 4 species were predominant in the three ponds (Nitzschia alpina, N. perminuta, Staurosira oldenburgiana, and Pinnularia subantarctica var. elongata), but not in the same proportions. The first three species differed from those which were found to be dominant in other basins covered by mosses in southern South America and in the sub-Antarctic region. The latter, P. subantarctica var. elongata, had only been found to be abundant in a moss sample from another South Shetland Island. The diatom assemblages were found to be more strongly related to habitat traits (e.g. distance to the sea, ponds’ areas, and the vegetation’s moisture levels) than to the physical–chemical variables measured in the water.     

Phytoplankton assemblages and community structure in tropical temporary freshwater ponds in sub‐Saharan Africa1

Anthropogenic and climatic factors are important determinants of algal distribution in aquatic systems. This study aimed to identify temporary pond‐groups of phytoplankton assemblages and to establish the interactions between environmental variables and phytoplankton structure. Phytoplankton samples were collected and preserved with 5% formalin; water samples for chemical analysis were taken in August and September 2007, 2008, and 2009 in 86 ponds randomly selected in the Sahelian sector and the Sudanian sector (protected and unprotected areas) of Burkina Faso. Plankton species were examined using light microscopy and identified using standard methods. A Fuchs‐Rosenthal chamber was used for algal cell counting. NMDS ordination, indicator species analysis and canonical analysis were performed using Pc‐Ord and CANOCO. Kruskal–Wallis and Mann–Whitney U‐tests using the software Statistica were performed to compare parameters between pond‐groups. Three pond‐groups were identified: the Sahelian pond‐group, dominated by Lyngbya martensiana and Pseudanabaena constricta; the protected area pond‐group, dominated by Euglena caudata and Trachelomonas raciborskii; and the unprotected area pond‐group, dominated by Closterium venus and Euglena proxima. At P < 0.05, species composition and abundance in algal groups were mostly associated with nitrate, pH, dissolved oxygen, and conductivity. The Sahelian and the Sudanian sectors were different in pH, water transparency, and species richness. Univariate and multivariate analyses illustrate that variations in the physicochemical properties of water and algal structure followed climatic and anthropogenic gradients. The classification of ponds into algal associations demonstrated that algal assemblages may be used as reliable indicators of habitat conditions.