Eleven new microsatellite loci for the tiger rattlesnake (Crotalus tigris)

Eleven microsatellite loci were isolated from an enriched genomic library from the tiger rattlesnake Crotalus tigris. Average observed heterozygosities in two populations were 0.456 and 0.427, respectively, and mean number of alleles were 7.54 (range 2-14) and 4.72 (range 2-13) respectively. No evidence of linkage disequilibrium was found across pairs of loci. The markers will be used in a long-term study examining the potential effects of urbanization on population dynamics and connectivity of this species in the mountain ranges surrounding Tucson, Arizona.     

Androgenesis and homozygous gynogenesis in muskellunge (Esox masquinongy): Evaluation using flow cytometry

The purpose of this work was to study the effects of ultraviolet (UV) irradiation on denucleation of eggs and investigate the heat-shock conditions for diploidization for induction of androgenesis in muskellunge, Esox masquinongy. Several egg incubation media, including saline, Ringer's solution, and Ringer's solution supplemented with bovine serum albumin (BSA), were found suitable to maintain the egg fertility as high as in muskellunge ovarian fluid. The optimal doses of UV radiation were 660–1320 J/m², at which 100% haploid larvae were produced at a hatching rate of 22.5 ± 2.8%. UV irradiation at low doses (165–330 J/m²) generated abnormal larvae, which were morphologically identical to haploids. Using a flow cytometry method, it was found that cellular DNA content of these larvae was close to that of diploids but significantly lower in value and had a wider distribution (expressed as coefficient of variation) than that of control fish. This suggested that a low dose of UV irradiation might cause gene mutations, alteration of chromosomal conformation and fragmentation, but did not prevent maternal DNA from participating in mitotic division. Interference of maternal DNA residues could be another reason for the poor viability of androgenetic fish. A high dose of UV radiation (1980 J/m²) caused development of severely deformed embryos, indicating that UV radiation also damaged molecules in the eggs other than the denucleation. Our results suggest that classic color and allozyme markers might not be sufficient to prove a complete androgenesis. In order to optimize time and duration of shock for induced diploidization, we investigated the heat-shock conditions for inhibiting the first mitotic cleavage through induction of homozygous gynogenesis. We found that heat-shock treatment at 31°C for 9 min starting at 1.4τ₀ (a dimensionless factor describing progress in embryo development) after fertilization produced the highest percentage of diploids at hatching. Mol. Reprod. Dev. 49:10–18, 1998. © 1998 Wiley-Liss, Inc.     

Fluctuations in the muskellunge (Esox masquinongy Mitchill) population of Chautauqua Lake,New York

Synopsis Population and exploitation estimates were made from angler recaptures of Chautauqua Lake muskellunge,Esox masquinongy Mitchill. Fish were tagged during Conservation Department studies in 1941–1946, 1961–1965 and 1976–1978. Population estimates of adult fish ranged from one to seven fish per hectare and angler exploitation rates of tagged fish fluctuated from 3.8% to 14.1%. Relative catch indicators suggest a major decline in the lake's muskellunge population during the last decade. Overexploitation, habitat alteration and interspecific competition with recently introduced fish species were cited as probable causes of the decline.     

Characteristics of Ontario muskellunge (Esox masquinongy) fisheries based on volunteer angler diary information

This paper consolidates and summarizes information on Ontario muskellunge, Esox masquinongy, sport fisheries derived from angler diary programs sponsored by the Ontario Ministry of Natural Resources (OMNR) and Muskies Canada Incorporated (MCI) from 1979 to 2004. Interest in muskellunge as a sport fish has increased substantially over the past 10–15 years. Muskellunge catches were found to be highly correlated with angling effort. Catch rates, expressed in terms of catch-per-unit-of-effort (CUE), have improved over the past decade to the point where, in 2001, the provincial CUE was 0.119. The long term catch rate is 0.069. This improvement in angling quality is attributed to new minimum size limit regulations and increased catch-and-release angling practices. Over the period from 1979–2004, release rates by muskellunge anglers have averaged 94%. Based on a sample size of 9,499 fish, the mean size of angled muskellunge over the past 26 years was 37.0 inches (94 cm). Numerous fish exceeding 50 inches (127 cm) are angled from Ontario waters each year. The incidence of lymphosarcoma, a highly contagious, malignant blood cancer, has averaged only 2% since 1979. Based on an analysis of this information, Ontario’s muskellunge fisheries appear to be stable and sustainable. Volunteer angler diary programs provide an accurate and cost-effective means to monitor the status of muskellunge fisheries in Ontario.     

Eight new tetranucleotide microsatellite loci for the agile frog (Rana dalmatina)

We describe eight new polymorphic tetranucleotide microsatellite loci isolated from the agile frog (Rana dalmatina). In 25 individuals from the Nature Reserve Lüneburger Heide (Lower Saxony, Germany), the number of alleles per locus ranged from four to nine and average observed heterozygosities from 69.1% to 80.7%. No evidence for linkage disequilibrium was found and none of the loci showed significant deviation from Hardy-Weinberg expectations. These microsatellite DNA markers are suitable tools for addressing population genetics issues in this endangered species.     

Development of 21 microsatellite loci for puma (Puma concolor) ecology and forensics

We developed 21 microsatellite (13 dinucleotide and 8 tetranucleotide) primers specifically for pumas (Puma concolor). The primers were tested across 243 individuals from California and Nevada, and displayed an average of 5.5 alleles per locus. Previously, domestic cat (Felis catus) primers have been adapted for puma genetic studies. Puma‐specific loci may reduce concerns associated with ascertainment bias, improve genetic structure resolution and provide additional tetranucleotide loci valuable for forensic applications. These puma‐specific microsatellites will aid studies involving parentage, kinship and population structure, along with forensic case applications including poaching and puma‐associated injuries to humans and domestic animals.     

Isolation,characterization and multiplex genotyping of raccoon tetranucleotide microsatellite loci

We have isolated and characterized 12 polymorphic tetranucleotide microsatellite loci in the raccoon (Procyon lotor). Three multiplex panels comprising the 12 loci were developed and 80 individuals from southeastern and western Ontario were genotyped; allele sizes were assigned without difficulty. One locus isolated was identified as an X‐linked marker. The number of alleles per locus ranged from six to 25 with the average heterozygosity ranging from 0.674 to 0.925. These loci will be used to characterize raccoon population structure across North America, and the data used to further understand the spread of raccoon rabies.     

Development and characterization of eight polymorphic microsatellite loci from Pistacia lentiscus L. (Anacardiaceae)

We have developed a set of eight polymorphic nuclear microsatellite markers for the Mediterranean shrub Pistacia lentiscus by means of an enriched library method. Characterization for the eight loci was carried out on 42 individuals from two populations sampled in southern Spain. The overall number of alleles detected was 59, ranging from three to 13 per locus. Expected heterozygosity per locus and population ranged from 0.139 to 0.895. Two loci albeit only in one population (Seville) departed significantly from Hardy-Weinberg equilibrium expectations and no linkage disequilibrium between pairs of loci was detected. These markers will be used in studies of gene flow across a fragmented landscape.     

Isolation and characterization of eight microsatellite loci for white hake (Urophycis tenuis)

Eight tetranucleotide microsatellite loci were characterized for white hake, Urophycis tenuis, a commercially exploited demersal gadoid fish distributed in the Northwest Atlantic. The eight loci are polymorphic with number of alleles and observed heterozygosities ranging from seven to 40 and from 0.544 to 0.978, respectively, in samples of between 39 and 47 individuals collected from throughout the species range. These loci were developed for population genetic studies.     

Characterization of six microsatellite loci in Echium vulgare (Boraginaceae)

Echium vulgare is a tetraploid plant with a very low selfing rate in the field. We suspect that cryptic self incompatibility plays a role in this species. In order to show lower success of self pollen/selfed embryos, after pollination with a mixture of self and outcross pollen, a paternity analysis has to be done. For the purpose of such analysis we developed microsatellites in E. vulgare. In this study, we report on six microsatellite loci which are easy to score, polymorphic, with a number of alleles per locus ranging from two to eight and, therefore, suitable for paternity analysis.     

Development and characterization of microsatellite loci in the eastern chipmunk (Tamias striatus)

We isolated and characterized 16 microsatellite loci in the eastern chipmunk, Tamias striatus. The loci were screened across 25 individuals from one population and shown to be polymorphic with the number of alleles per locus ranging from two to 17. Polymorphic information content ranged from 0.212 to 0.887 and observed heterozygosity ranged from 0.200 to 0.960. Only two loci (Chip 10 and Chip 25) deviated from Hardy–Weinberg equilibrium.     

Novel microsatellite DNA loci for Bombus terrestris (Linnaeus, 1758)

We present details and characteristics of 123 novel polymorphic microsatellite DNA loci for Bombus terrestris. Thirty-four of these loci have been tested in nine other Bombus species and 25 of them showed polymorphisms in at least one species. These microsatellite DNA loci together with the already established 60 loci will be useful for characterizing wild and managed populations of B. terrestris and other Bombus species as well as for detailed genetic studies in including mapping studies and genome annotations.     

Development of 11 polymorphic microsatellite loci in the small abalone (Haliotis diversicolor Reeve)

Eleven polymorphic microsatellite loci for Haliotis diversicolor were isolated and characterized from (CT)(n) - and (AC)(n) -enriched library. They were tested in 24 individuals from a natural population. All of them were polymorphic, with the number of alleles varying between three and 10. The observed heterozygosities and expected heterozygosities ranged from 0.083 to 0.913 and from 0.159 to 0.856, respectively. The 11 isolated microsatellite loci, except SA-JMU6 and SA-JMU12, followed Hardy-Weinberg expectations. Seven sets of primers also amplify in closely related species, H. ovina and H. asinine. These 11 polymorphic microsatellites will be useful for analysing the population structure and genetic diversity in H. diversicolor.     

Henneguya michiganensis n. sp. (Cnidaria: Myxosporea) from the gills of muskellunge Esox masquinongy Mitchill(Esociformes: Esocidae)

Systematic Parasitology - Henneguya Thélohan, 1892 is the second most species rich genus of myxozoans, with reports from freshwater and marine fish worldwide. In the Great Lakes...     

Characterization of 25 microsatellite loci in bowhead whales (Balaena mysticetus)

Bowhead whales (Balaena mysticetus) experienced a severe demographic population bottleneck caused by commercial whaling that ceased in 1914. Aboriginal subsistence whale harvests have continued and are managed by the International Whaling Commission. In an effort to provide management advice for bowhead whales, 25 microsatellite loci were isolated from genomic DNA libraries. This panel of markers will be utilized to analyse stock structure hypotheses of current bowhead whale populations.     

Isolation and characterization of microsatellite loci for storm-petrels

Primers were developed for 10 microsatellite loci for two species of Oceanodroma storm-petrels. Variability was tested in 27 O. castro and 22 O. monteiroi from the Azores, and 24 O. leucorhoa from Norway. At least six loci amplified reliably and were polymorphic in each species. The number of alleles per locus averaged 4.6, and observed heterozygosities averaged 0.41. Most primers also yielded polymerase chain reaction products in O. tethys, O. hornbyi and Pterodroma phaeopygia. These loci are being used to assay population genetic structure in storm-petrels.     

Ten polymorphic microsatellite loci for the trematode Curtuteria australis (Echinostomatidae)

Ten polymorphic loci were isolated and characterised from the intertidal New Zealand trematode Curtuteria australis. This common parasite manipulates the burrowing behaviour of its abundant bivalve host Austrovenus stutchburyi, with cascading impacts on the biodiversity of intertidal communities. Observed heterozygosities of the 10 loci ranged from 0.500 to 0.905, and three to 14 alleles were detected in 24 trematode metacercariae. These loci are currently being used to investigate the molecular ecology of this species within its intermediate hosts.     

Characterization of microsatellite loci in Ipomopsis (Polemoniaceae) wildflowers

Members of the Ipomopsis aggregata species complex in the phlox family (Polemoniaceae) often hybridize when they occur in sympatry, and thus have been extensively studied to examine processes involved in plant speciation. I developed 12 microsatellite loci in I. aggregata that are also polymorphic in closely related Ipomopsis tenuituba, producing an average of eight alleles per locus in test populations of 12 individuals per species. Several of these markers also successfully amplified in other Ipomopsis species and more distant members of the Polemoniaceae, suggesting they should prove useful for a broad range of evolutionary studies in this widely distributed system.     

Development of 10 microsatellite loci in the pulmonate snail Biomphalaria kuhniana (Mollusca, Gastropoda)

We characterized 10 variable microsatellite loci in the freshwater snail Biomphalaria kuhniana, as well as conditions for multiplexing and co-loading sets of loci. Two to five alleles were detected per locus over the two studied populations in Venezuela. High inbreeding coefficients suggest high selfing rates. Cross-species amplification provided some variability at eight and three loci in the other species belonging to the Biomphalaria straminea complex (B. straminea and B. intermedia), but was unsuccessful in more divergent species.