The development of the trigeminal jaw adductor musculature and associated skull elements in the lizard Podarcis sicula

The ontogenetic development of the jaw adductor musculature in Podarcis sicula (Raftnesque) is described in detail and related to patterns of ossification in associated skull elements. It was found that the coronoid bone ossifies in continuity with the developing bodenaponeurosis, whereas the elements of the upper temporal arcade ossify prior to (and seemingly independently of) the realization of an attachment of the developing jaw adductors.
Various aspects of the development of the jaw adductors are discussed in the light of theoretical claims concerning conflicting models of ontogeny, as is the role of ontogenetic studies in the determination of character polarity. It is concluded that the present study supports the model of epigenetic development, and that ontogeny alone is insufficient for the assessment of character polarity. Instead, ontogeny must be interpreted in the context of phylogenetic hypotheses.     

Phylogenetic interpretation of ontogenetic change: sorting out the actual and artefactual in an empirical case study of centrarchid fishes

Hypothesized relationships between ontogenetic and phylogenetic change in morphological characters were empirically tested in centrarchid fishes by comparing observed patterns of character development with patterns of character evolution as inferred from a representative phylogenetic hypothesis. This phylogeny was based on 56–61 morphological characters that were polarized by outgroup comparison. Through these comparisons, evolutionary changes in character ontogeny were categorized in one of eight classes (terminal addition, terminal deletion, terminal substitution, non-terminal addition, non-terminal deletion, non-terminal substitution, ontogenetic reversal and substitution). The relative frequencies of each of these classes provided an empirical basis from which assumptions underlying hypothesized relationships between ontogeny and phylogeny were tested. In order to test hypothesized relationships between ontogeny and phylogeny that involve assumptions about the relative frequencies of terminal change (e.g. the use of ontogeny as a homology criterion), two additional phylogenies were generated in which terminal addition and terminal deletion were maximized and minimized for all characters. Character state change interpreted from these phylogenies thus represents the maxima and minima of the frequency range of terminal addition and terminal deletion for the 8.7 × 10³⁶ trees possible for centrarchids. It was found for these data that terminal change accounts for c. 75% of the character state change. This suggests either that early ontogeny is conserved in evolution or that interpretation and classification of evolutionary changes in ontogeny is biased in part by the way that characters are recognized, delimited and coded. It was found that ontogenetic interpretation is influenced by two levels of homology decision: an initial decision involving delimitation of the character (the ontogenetic sequence), and the subsequent recognition of homologous components of developmental sequences. Recognition of phylogenetic homology among individual components of developmental sequences is necessary for interpretation of evolutionary changes in ontogeny as either terminal or non-terminal. If development is the primary criterion applied in recognizing individual homologies among parts of ontogenetic sequences, the only possible interpretation of phylogenetic differences is that of terminal change. If homologies of the components cannot be ascertained, recognition of the homology of the developmental sequence as a whole will result in the interpretation of evolutionary differences as substitutions. Particularly when the objective of a study is to discover how ontogeny has evolved, criteria in addition to ontogeny must be used to recognize homology. Interpretation is also dependent upon delimitation within an ontogenetic sequence. This is in part a function of the way that an investigator ‘sees’ and codes characters. Binary and multistate characters influence interpretation differently and predictably. The use of ontogeny for determining phylogenetic polarity as previously proposed rests on the assumptions that ancestral ontogenies are conserved and that character evolution occurs predominantly through terminal addition. It was found for these data that terminal addition may comprise a maximum of 51.9% of the total character state change. It is concluded that the ontogenetic criterion is not a reliable indicator of phylogenetic polarity. Process and pattern data are collected simultaneously by those engaged in comparative morphological studies of development. The set of alternative explanatory processes is limited in the process of observing development. These form necessary starting points for the research of developmental biologists. Separating ‘empirical’ results from interpretational influences requires awareness of potential biases in the course of character selection, coding and interpretation. Consideration of the interpretational problems involved in identifying and classifying phylogenetic changes in ontogeny leads to a re-evaluation of the purpose, usefulness and information conveyed by the current classification system. It is recommended that alternative classification schemes be pursued.     

Application of the biogenetic law to behavioral ontogeny: a test using nest architecture in paper wasps

General principles derived from studies of morphological ontogeny are useful in ethology. Behavioral ontogeny may be interpreted from an holistic view in which a series of behaviors is treated as an ontogeny toward a larger, complex, behavioral product. If the component behaviors are defined broadly, many taxa may be compared to find general principles that are not evident when behaviors are dissected to their smallest recognizable units. Flow charts can illustrate such general ontogenetic sequences in a manner that shows what sorts of modifications have evolved from the general pattern. Certain changes may illustrate forms of ontogenetic evolution that are well known for morphological development, such as addition or embellishment of terminal ontogenetic steps, or compression of ontogeny by acceleration or deletion of early steps. The major modifications in nest construction behavior of 28 genera of paper wasps are presented to test the predictions of the biogenetic rule with respect to character polarity. Cladistic analyses of separate morphological and behavioral data sets show that polarity is accurately inferred with respect to the five major patterns of nest construction in paper wasps.     

Phylogeny of the Agathidiini Westwood (Coleoptera: Leiodidae) and implications for classification and contractile morphology

A cladistic analysis of the tribe Agathidiini Westwood is presented. Agathidiines are slime mould specialists and they are hypothesized to be a monophyletic group consisting of 12 genera (Afroagathidium Angelini & Peck, Agathidium Panzer, Anisotoma Panzer, Besuchetionella Angelini & Peck, Cyrtoplastus Reitter, Decuria Miller & Wheeler, Gelae Miller & Wheeler, Liodopria Reitter, Pseudoagathidium Angelini, Sphaeroliodes Portevin, and Stetholiodes Fall), based on three synapomorphies: epipleuron present to apical third, mesoventrite without longitudinal carina and longitudinal setal lines present on the tibiae. The dataset for phylogenetic analysis comprised 72 characters representing 198 character states derived from adult morphology. These data were analysed using equal weighting and implied weighting (k = 1–6) and supported the monophyly of the tribe based on three unique characters (epipleuron present to apical third, mesoventrite without longitudinal carina, longitudinal setal lines present on tibia) and two homoplastic characters [antennomeres 7–10 (or 6–9) asymmetrical, apical shape of terminal antennomere abruptly tapered]. The topology of IW trees with k = 4–6 was identical with one of three EW trees. Decuria was sister group to the remaining agathidiine genera whereas the following groups were resolved as monophyletic: Anisotoma, Gelae + Liodopria, and Pseudoagathidium (Afroagathidium + Besuchetionella). The clade [Sphaeroliodes rufescens (Agathidium bockshini, Agathidium subcostatum)] was supported in all analyses except for the IW (k = 1) cladogram. The monophyly of Agathidium was not supported at all and was rendered paraphyletic by the placements of Sphaeroliodes, Stetholiodes and the Pseudoagathidium (Afroagathidium + Besuchetionella) clade. Sphaeroliodes is synonymized with Agathidium ( syn.n. ) resulting in two new combinations [A. acuminatus (?vec) and A. rufescens (Portevin)]. Contractability is a complex character composed of several morphological features that have evolved independently within the agathidiine tree. Conglobation (the ability to roll the body into a ball) has arisen at least twice in Agathidiini.     

OUTGROUPS AND ONTOGENY

Abstract— Common themes in some recent expositions of character phylogeny are attempts to prove that outgroup comparison is a method of the greatest generality, and that the ontogenetic criterion reduces to outgroup comparison. Another common theme is that pattern cladistics is wrongheaded in suggesting that ontogenetic data have a unique value for studies of character phylogeny. Analysis of particular examples that have been offered as proof of the themes shows them to be flawed and without significance. Arguments against pattern cladistics and the relevance of ontogeny stem from a concern for ideological purity and not for objective appraisal of relevant evidence.     

NUCLEIC ACID SEQUENCE PHYLOGENY AND RANDOM OUTGROUPS

Abstract— When divergent taxa are used to root networks, it is assumed that the character stales in the outgroup have historical similarity to those in the ingroup. Yet, if the data are nucleic acid sequences, the character stales shared by a divergent outgroup may be based not on history but on random similarity. A simple procedure is proposed to test this possibility. In the absence of an appropriate outgroup, root position can be estimated with the use of an asymmetrical character transformation matrix. If the matrix is sufficiently biased, it can supply the polarity information usually derived from an outgroup. This outgroup test and rooting procedure are demonstrated with ADH sequences from the genus Drosophila .     

Is there a direct ontogenetic criterion in systematics?

Much recent literature focuses on whether ontogenetic information can be used as a direct criterion for determining the polarity of character trasformations in systematic analysis. This paper reviews the relevant literature and concludes that the ontogenetic criterion is dependent on parsimony rather than the sequence observed during ontogeny. It is not, therefore, based on the discredited arguments of recapitulation. From the perspective of phyologenetic systematics the ontogenetic criterion is a valid means of polarizing character transformations that represents a special case of a broader methodology involving parsimony. The alternative perspective perspective of patttern cladistics holds that polarity should be contained within the data and not imposed upon it. Thus, ontogeny is not required to polarize characters, but ontogenetic information can generate unequivocal character interpretations in terms of the relative generality of related attributes, and in the sense that absence precedes presence. Furthermore, ontogeny is central to systematics, providing empirical evidence of character transformation, information on the whole life cycle and an escape from systematics being teleologically related to phylogenetic inference and the theory of evolution.     

PHYLOGENETIC ANALYSIS OF THE MALE ONTOGENETIC PROGRAM IN AQUATIC AND TERRESTRIAL MONOCOTYLEDONS

The male program of ontogeny in flowering plants encompasses the events from meiosis of microsporocytes to fertilization. Three main sequences are discussed; the deposition of cell walls, changes in cytoplasmic organelles, and the program of nuclear divisions leading to the formation of two sperm cells and a vegetative cell in each pollen grain. Variations in these ontogenetic sequences are particularly apparent in the monocotyledons, which exhibit diversity in pollen morphology, wall structure, and mode of pollination. The male program of development has been compared in selected terrestrial monocotyledons belonging to the Liliaceae and Gramineae and aquatic members of the Cymodoceaceae, Najadaceae, and Zannichelliaceae. A total of 26 characters from the male program are discussed and then used to construct a cladogram derived only from developmental data for the five species. The polarity of only a few of the character transformations has been determined directly by observation of developmental sequences; most have been interpreted by outgroup analysis.     

The use of structural reduction in phylogenetic reconstruction of decapods and a phylogenetic hypothesis for 15 genera of Majidae: testing previous larval hypotheses and assumptions

Summary

Using larval data of zoeae from selected genera of majids, we determined tree topologies, levels of homoplasy, and frequencies of reduction under three different assumptions of character argumentation: ordered reduction events, unordered reduction events, and outgroup comparison. Under each assumption we provided a phylogenetic hypothesis for some majid genera and evaluated the assumption that structural reduction can be assumed a priori as a criterion to infer character transformation polarity in phylogenetic reconstruction of decapods. The results indicate that the a priori assumption of “reduction” as the derived condition is not justified because under this assumption, reduction is not always maintained throughout the resulting phylogenetic hypothesis. Furthermore, we also found that this criterion fails to provide the most parsimonious explanation of the data set. Therefore, we reject the use a “reduction=derived” criterion to infer polarity in phylogenetic reconstruction. Phylogenetic analysis using outgroup comparison provided a phylogenetic hypothesis with a better fit and a lower frequency of reduction events. However, we found that statements of homology may be problematic when the number of larval stages in the outgroup differ from those of the ingroup. To overcome this problem, we suggest that, in the absence of evidence for developmental homology, all larval stages should be considered as potential homologues. Using this approach to homology of larval stages, we provide a new phylogenetic hypothesis for 15 genera of majids based on larval morphology. Within Majidae, representative members of Majinae formed a highly nested monophyletic group with the following topology: ((Jacquinotia+Notomithrax) (Leptomithrax+Maja)). In contrast, the Oregoniinae (Hyas+Chionoecetes) formed a basal monophyletic group. Contrary to established ideas for the monophyly of Inachinae, Macrocheira is basal to the Oregoniinae. Other taxa did not form monophyletic groupings based on classical assignment to subfamilies.     

The eutherian stapedial artery: character analysis and implications for superordinal relationships

Evidence from outgroups, ontogeny, neontology, and fossils is used to distinguish primitive and derived character states for the major components of the eutherian stapedial artery in 17 modern orders. Derived states support the following higher-level phylogenetic hypotheses: (1) Microchiroptera and Megachiroptera are monophyletic+ADs- and (2) within Ungulata, Tubulidentata is the outgroup to the remaining modern orders, followed in succession by Artiodactyla and then Cetacea. Three branches of the stapedial artery, the a. diploetica magna, ramus temporalis, and ramus posterior, all but neglected in previous syntheses, are shown to be primitive for Eutheria and Amniota.     

PHYLOGENY OF THE NEMERTEAN SUBCLASS PALAEONEMERTEA (ANOPLA, NEMERTEA)

Abstract— A cladistic analysis based on 50 morphological characters was performed for 49 of the 98 species currently assigned to the subclass Palaeonemertea (phylum Nemertea), and six additional undescribed species. Thirty-five species were excluded from the parsimony analysis because of the high number of unknowns in the character matrix, and one species since it was considered a nomen nudum . An initial analysis suggested that the subclass Hoplonemertea is the sistergroup to the clade Palaeo- and Heteronemertea and the ingroup cladograms are rooted using a paraphyletic outgroup based on this information. Seventy-two equally most parsimonious cladograms were found; the consistency index was low but tree-length distribution for the character set is skewed to the left, and the cladograms are invariably shorter than trees based on random data. These cladograms suggested a character transformation series for the cerebral organ where this complex character reappeared several times after being absent. We considered this biologically implausible and the final discussion is based on three cladograms, one step longer than the most parsimonious, where the evolution of this character appears to be more realistic. The cladistic analysis indicates that many previously recognized genera (e.g. Cephalothrix, Procephalothrix and Cephalotrichella ), and higher taxa, are paraphyletic. It furthermore indicates that the previously suggested hypothesis of the Archinemertea as a monophyletic sistertaxon to Palaeonemertea is unsupported.     

螟黄足盘绒茧蜂复合群支序系统学研究（膜翅目：茧蜂科：小腹茧蜂亚科）

对螟黄足盘绒茧蜂复合群Cotesia flavipes complex (膜翅目：茧蜂科：小腹茧蜂亚科)分布全世界的5个种和外群侧沟茧蜂Microplitis 及荻茧蜂Diolcogaster 的25个性状,以及复合群5个种和外群螟蛉盘绒茧蜂Cotesia ruficrus、粘虫盘绒茧蜂Cotesia kariyai、粉蝶盘绒茧蜂Cotesia glomerata 的24个性状,分别进行比较研究,并运用支序分析的方法探讨该复合群内5个种种间的系统发育关系。支序分析表明螟黄足盘绒茧蜂复合群是一单系群,二化螟盘绒茧蜂C. chilonis 和大螟盘绒茧蜂C. sesamiae 近缘,芦螟盘绒茧蜂C. chiloluteelli 和汉寿盘绒茧蜂C. hanshouensis 近缘,螟黄足盘绒茧蜂C. flavipes相对独立。 以上研究表明无论是以近缘属作外群还是以同属其它种作外群,所得结果基本上都能反映螟黄足盘绒茧蜂复合群各种之间的分类地位。     

Hypothetical Ancestors and Rooting in Cladistic Analysis

Most hypothetical ancestors that are used to root trees in cladistic analyses summarize character-state information in one or more outgroup taxa. Nonetheless, hypothetical ancestors also provide a means of rooting trees using the ontogenetic and paleontological methods of polarizing character transformations, and for incorporating the inferences of more than one of these methods into a single analysis. However, the use of one hypothetical ancestor that combines inferences based on outgroup comparison with those based on other methods of polarizing character transformations to root a cladogram is invalid. Inferences regarding plesiomorphic character states based on outgroup comparison apply to the outgroup node, whereas inferences based on either the ontogenetic or paleontological method apply to the ingroup node. These inferences cannot be combined into a single hypothetical construct. A hypothetical ancestor based on outgroup information is included in the data matrix and used to root the resulting network; however, because this ancestor places potentially problematic constraints on the analysis, the use of actual outgroup taxa is preferable in most instances. Correct use of a hypothetical ancestor inferred with the ontogenetic and paleontological methods involves the Lundberg method in which the shortest ingroup network is rooted at the internode to which the hypothetical ancestor attaches most parsimoniously. Because inferences of polarity based on outgroup comparison cannot be combined directly with those based on other polarization methods, the synthesis of information from all three methods in a single tree must involve taxonomic congruence.     

The features of cotyledon areoles in Leguminosae and their systematic utility

The cotyledon areole, which is a spot with granular projections of epidermal cells, appears on the abaxial surface and on the midvein of some legume seed cotyledons. The distribution and systematic utility of cotyledon areoles were studied by observation of 132 legume species, which represent 100 genera and are classified into 34 tribes of three subfamilies, i.e., Caesalpinioideae, Mimosoideae, and Papilionoideae. The cotyledon areole is found in many species of Papilionoideae but not in the other two subfamilies. Presence of a cotyledon areole is presumed to be an apomorphic character state in Papilionoideae from the outgroup rule.     

The threefold parallelism of Agassiz and Haeckel,and polarity determination in phylogenetic systematics

A parallel exists between the threefold parallelism of Agassiz and Haeckel and the three valid methods of polarity determination in phylogenetic systematics. The structural gradation among taxa within a linear hierarchy, ontogenetic recapitulation, and geological succession of the threefold parallelism resemble outgroup comparison, the ontogenetic method, and the paleontological method, respectively, which are methods of polarity determination in phylogenetic systematics. The parallel involves expected congruence among similar components of the distribution of character states among organisms. The threefold parallelism is a manifestation of a world view based on linear hierarchies, whereas polarity determination is part of the methodology of phylogenetic systematics which assumes that organisms are grouped into a nested hierarchy. The threefold parallelism facilitated the ranking of previously established taxa into linear hierarchies consisting mostly of paraphyletic groups. In contrast, methods of polarity determination identify apomorphies that determine and diagnose monophyletic taxa (clades) in the nested genealogical hierarchy. Taxa in linear hierarchies are defined by sets of character states, whereas clades are defined by common ancestry. Although the threefold parallelism was ostensibly abandoned with the rejection of Haeckel's biogenetic law, some of its components continue to facilitate the progressive scenarios that are common in evolutionary thought. Although a general view of progression in organismal history may be invalid, the progressive or directional sequence of character state changes that results in the characterization of a particular clade has considerable heuristic value. Agassiz's ostensibly nested hierarchy and other pre-Darwinian classifications do not provide support for the view that the natural system can be discovered without recourse to the principle of common descent.     

ACTH secretion during sleep in a patient with Nelson's syndrome.

Plasma ACTH determinations were made by radioimmunoassay, every 10 min for 8 hours during sleep in a patient with Nelson's syndrome. The plasma ACTH concentrations were relatively stable, fluctuating in a narrow range. It is strongly suggested that the pituitary tumor itself was secreting ACTH in an autonomous manner and it is concluded that a neuronally initiated program of ACTH secretion, was absent in the present patient with Nelson's syndrome.     

A catalogue of skulls and jaws of eastern tropical Pacific blennioid fishes (Blennioidei: Teleostei): A proposed evolutionary sequence of morphological change

Skulls and jaws are compared in 35 species of tropical eastern Pacific (mainly Gulf of California) blennioid fishes (5 species of Tripterygiidae, 13 Labrisomidae, 12 Chaenopsidae, 5 Blenniidae). Morphotypes are arranged in a series from relatively large-mouthed fishes (tripterygiids and a few labrisomids) with protrusible jaws and conical teeth to species with small, non-protrusible jaws and a single row of incisiform teeth. This polarity of arrangement probably reflects the direction of phylogenetic development, as suggested by outgroup comparison with other perciform fishes. Distribution patterns of morphotypes in a simple morphospace, obtained by combining dentition, shape of the jaw arch and jaw protrusibility, are discussed within an adaptive context.     

ON OUTGROUPS

Abstract— The relations among polarity, outgroups and rooting are clarified. The "outgroup algorithm" and "outgroup substitution method" are irrelevant forms of relaxed parsimony. They should be discarded in favor of unconstrained, simultaneous analysis of all terminals. A revised outgroup method is described both in text and with a computer-generated flowchart. Lundberg rooting is consistent with cladistic parsimony only under specific circumstances involving hypothetical ancestors.
"Both sides seemed convinced that the 'real enemy'is a vicious conspiracy of some kind."
Hunter S. Thompson (1979: 145).     

New approaches to the systematics of the ancyrocephalid Monogenea from Nearctic freshwater fishes

A total of 133 ancyrocephalid species found on Nearctic freshwater fishes have been named. Of these, 103 are now considered valid; 14 and 16 have been declared previously as synonyms or species inquirendae, respectively, and Urocleidus rarus Mizelle, 1940, is designated as a species inquirenda in the present work. A cladistic analysis, based on 13 binary and 4 multistate characters and 32 apomorphic character states was carried out. Generalized forms of Entobdella, Gyrodactylus, and Tetraonchus were used to generate a hypothetical outgroup taxon. Thirteen terminal taxa emerged. Of these, 3 (the articulating bar group, Ligictaluridus, and Onchocleidus sensu Wheeler and Beverley-Burton, 1989) have been recognized previously as monophyletic; 3 (Aethycteron, Lyrodiscus, and Salsuginus) were shown to be monophyletic in the present study; 3 (Leptocleidus, Macrohaptor, and Tetracleidus) are monotypic genera; and 4 were identified as unresolved assemblages that contain a number of species considered to be incertae sedis as well as those assigned to the following genera: Aristocleidus Mueller, 1936, Urocleidus sensu Suriano and Beverley-Burton, 1981, Cleidodiscoides Mayes and Miller, 1973, and Cleidodiscus sensu Beverley-Burton and Suriano, 1980. The resultant cladogram was 40 steps long with a consistency index of 0.80. The monophyly of the ingroup is supported by 5 synapomorphies. Comparison and mapping of the parasite cladogram with/onto a family-level cladogram of hosts indicated that the present data provided no unequivocal evidence of cospeciation. Some possible origins for the Nearctic ancyrocephalids are discussed, and the need for further taxonomic studies on the Holarctic ancyrocephalids to explore the possible sister-group relationship between the Nearctic and Eurasian faunas is emphasized.