Herbaceous production in South India—limiting factors and implications for large herbivores

This study’s goal was to better understand the growth pattern and limitations of the herbaceous production that supports South India’s rich large herbivore grazer assemblage. We conducted a fully factorial nitrogen and water (three levels each) treatment field experiment in the herbivore rich South Indian Western Ghats region to determine the seasonal pattern and the extent to which nitrogen and water availability limit herbaceous production. Graminoid production was found to be nitrogen limited. Despite low rainfall, additional water did not significantly increase overall biomass production nor extend growth in the dry season. Accumulated standing biomass was highest in the late wet season (November) and lowest in the dry season (May). Leaf nitrogen was highest in the early wet season (June) and lowest in the late dry season (March). Grazing had a positive effect on grass production by extending the growing season. Biomass production and graminoid leaf nitrogen concentration levels in the study area were similar to other tropical areas in the world. Also similar to other tropical large herbivore areas, the dry season poses an annual challenge for large herbivores in the study area —particularly the smaller bodied species—to satisfy their nutrient requirements.     

Feast or famine: evidence for mixed capital–income breeding strategies in Weddell seals

Evolved patterns of resource expenditure for reproduction have resulted in a life history continuum across species. A strictly capital-breeding strategy relies extensively on stored energy for reproduction, whereas income breeding uses energy acquired throughout the reproductive period. However, facultative income breeding has been shown in some classically capital-breeding animals, and was originally thought to provide a nutritional refuge for smaller females incapable of securing sufficient reserves during pre-partum foraging. We examined milk composition and milk output for the Weddell seal to determine to what degree lactation was aided by food intake, and what factors contributed to its manifestation. Milk composition was independent of maternal post-partum mass and condition, but did change over lactation. Changes were most likely in response to energetic and nutritional demands of the pup at different stages of development. During early lactation, females fasted and devoted 54.9% of total energy loss to milk production. Later in lactation 30.5% more energy was devoted to milk production and evidence suggested that larger females fed more during lactation than smaller females. It appears that Weddell seals may exhibit a flexible strategy to adjust reproductive investment to local resource levels by taking advantage of periods when prey are occasionally abundant, although it is restricted to larger females possessing the physiological capacity to dive for longer and exploit different resources during lactation. This supports the assumption that although body mass and phylogenetic history explain most of the variation in lactation patterns (20–69%), the remaining variation has likely resulted from physiological adaptations to local environmental conditions. Our study confirms that Weddell seals use a mixed capital–income breeding strategy, and that considerable intraspecific variation exists. Questions remain as to the amount of energy gain derived from the income strategy, and the consequences for pup condition and survival. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Fibre digestibility in large herbivores as related to digestion type and body mass — An in vitro approach

The coexistence of different ungulate species in a given ecosystem has been the focus of many studies. Differences between ruminant foregut fermenters and hindgut fermenters were remarkable for example in the way they ingest and digest high fibre diets. Digestion trials based on total collections are difficult to conduct or are sometimes even not possible for wild animals in the field or in zoos. To gain information on the fibre digestion achieved by these animals and the influence of body mass (BM) thereon, a method using spot sampling is desirable. In this study, in vitro fermentation of faecal neutral detergent fibre (NDF) was used as a measure of fibre digestion in large ungulates. Food and faecal samples of 10 ruminant foregut fermenting and 7 hindgut fermenting species/breeds were collected. All animals received 100% grass hay with ad libitum access. The NDF of food and faeces was fermented in vitro in a Hohenheim gas test (HGT) for 96 h. The digestion type generally had an effect on the gas production (GP) of faecal NDF in the HGT with hindgut fermenters showing higher values than ruminant foregut fermenters. At any time interval of incubation, BM had no influence on GP. The results are in accordance with both findings that ruminant foregut fermenters have longer mean retention times and more comprehensive particle reduction and findings of a lack of influence of BM on digesta mean retention time. It can be stated that the HGT (96 h) is a useful and quick method to show also small differences within groups in fibre digestion.     

Richness–productivity relationships between trophic levels in a detritus-based system: significance of abundance and trophic linkage

Most theoretical and empirical studies of productivity–species richness relationships fail to consider linkages among trophic levels. We quantified productivity–richness relationships in detritus-based, water-filled tree-hole communities for two trophic levels: invertebrate consumers and the protozoans on which they feed. By analogy to theory for biomass partitioning among trophic levels, we predicted that consumer control would result in richness of protozoans in the lower trophic level being unaffected by increases in productivity, whereas richness of invertebrate consumers would increase with productivity. Our data were consistent with this prediction: consumer richness increased linearly, but protozoan richness was unrelated to changes in productivity. The productivity–richness relationships for all taxa combined were not necessarily consistent with relationships within each trophic level. We used path analysis to investigate the mechanisms that may produce the observed responses of trophic levels to changes in productivity. We tested the importance of the direct effect of productivity on richness and the indirect effect of productivity mediated by effects on total abundance. For protozoans, only direct effects of productivity on richness were important, but both direct and indirect effects of productivity on richness were important for invertebrates. Protozoan richness was strongly affected by top-down impacts of abundance of invertebrates. These results are consistent with theory on biomass partitioning among trophic levels and suggest a strong link between richness and abundance within and between trophic levels. Understanding how trophic level interactions determine productivity–richness relationships will likely be necessary in order for us to achieve a comprehensive understanding of the determinants of diversity. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The relationship between intra–guild diet overlap and breeding in owls in Israel

Even though intra-guild predators frequently prey on the same species, it is unclear whether diet overlap between two predators is a source of interspecific competition or whether predators simply use the same abundant prey resource. We measured the extent to which the diets of barn owls (Tyto alba) and long-eared owls (Asio otus) in Israel overlap and examined whether yearly differences in diet overlap correlate with barn owl breeding success. Pianka’s index of niche overlap was positively related to barn owl population size but not to its breeding success. The number of breeding barn owls was higher when long-eared owls consumed more rodents, suggesting that diet overlap most likely increased when rodents became more abundant. Therefore, in Israel, when these two owl species prey more often on rodents, their diets are more similar and interspecific competition is reduced. Unlike sympatric populations in Europe, in years when rodents are less abundant in Israel long-eared owls switch to hunting alternative prey (e.g., birds), perhaps to avoid competition with barn owls.     

Bistability and limit cycles in generalist predator–prey dynamics

Since generalist predators feed on a variety of prey species they tend to persist in an ecosystem even if one particular prey species is absent. Predation by generalist predators is typically characterized by a sigmoidal functional response, so that predation pressure for a given prey species is small when the density of that prey is low. Many mathematical models have included a sigmoidal functional response into predator–prey equations and found the dynamics to be more stable than for a Holling type II functional response. However, almost none of these models considers alternative food sources for the generalist predator. In particular, in these models, the generalist predator goes extinct in the absence of the one focal prey. We model the dynamics of a generalist predator with a sigmoidal functional response on one dynamic prey and fixed alternative food source. We find that the system can exhibit up to six steady states, bistability, limit cycles and several global bifurcations.     

Susceptibility gene search for nephropathy and related traits in Mexican–Americans

The rising global epidemic of diabetic nephropathy (DN) will likely lead to increase in the prevalence of cardiovascular morbidity and mortality posing a serious burden for public health care. Despite greater understanding of the etiology of diabetes and the development of novel treatment strategies to control blood glucose levels, the prevalence and incidence rate of DN is increasing especially in minority populations including Mexican–Americans. Mexican–Americans with type 2 diabetes (T2DM) are three times more likely to develop microalbuminuria, and four times more likely to develop clinical proteinuria compared to non-Hispanic whites. Furthermore, Mexican–Americans have a sixfold increased risk of developing renal failure secondary to T2DM compared to Caucasians. Prevention and better treatment of DN should be a high priority for both health-care organizations and society at large. Pathogenesis of DN is multi-factorial. Familial clustering of DN-related traits in MAs show that DN and related traits are heritable and that genes play a susceptibility role. While, there has been some progress in identifying genes which when mutated influence an individual’s risk, major gene(s) responsible for DN are yet to be identified. Knowledge of the genetic causes of DN is essential for elucidation of its mechanisms, and for adequate classification, prognosis, and treatment. Self-identification and collaboration among researchers with suitable genomic and clinical data for meta-analyses in Mexican–Americans is critical for progress in replicating/identifying DN risk genes in this population. This paper reviews the approaches and recent efforts made to identify genetic variants contributing to risk for DN and related phenotypes in the Mexican–American population.     

The herb community of a tropical forest in central Panamá: dynamics and impact of mammalian herbivores

Mammals are hypothesized to either promote plant diversity by preventing competitive exclusion or limit diversity by reducing the abundance of sensitive plant species through their activities as browsers or disturbance agents. Previous studies of herbivore impacts in plant communities have focused on tree species and ignored the herbaceous community. In an experiment in mature-phase, tropical moist forest sites in central Panamá, we studied the impact of excluding ground-dwelling mammals on the richness and abundance of herbs in 16, 30×45-m plots. Within each plot, we censused the herbaceous community in 28, 2×2-m subplots (1,792 m² total area sampled). We identified over 54 species of herbs averaging 1.21 ramets m⁻² and covering approximately 4.25% of the forest floor. Excluding mammals for 5 years had no impact on overall species richness. Within exclosures, however, there was a significant two-fold increase in the density of rare species. Overall herbaceous density and percent cover did not differ between exclosures and adjacent control plots, although cover did increase over time. Mammalian exclusion significantly increased the total cover of three-dominant herb species, Pharus latifolius, Calathea inocephala, and Adiantum lucidum, but did not affect their density. This study represents one of the most extensive herbaceous community censuses conducted in tropical forests and is among a few that quantify herbaceous distribution and abundance in terms of both density and cover. Additionally, this work represents the first community level test of mammalian impacts on the herbaceous community in a tropical forest to date. Our results suggest that ground dwelling mammals do not play a key role in altering the relative abundance patterns of tropical herbs in the short term. Furthermore, our results contrast sharply with prior studies on similar temporal and spatial scales that demonstrate mammals strongly alter tree seedling composition and reduce seedling density. Thus, we question the pervasiveness of top–down control on tropical plant communities and the paradigm that defaunation will inexorably lead to widespread, catastrophic shifts in plant communities.     

Natural fishing experiments in marine reserves 1983–1993: community and trophic responses

 This study examined the effect of fishing on the density, biomass, species richness and overall structure of the reef fish community at two islands (Sumilon and Apo) in the Philippines from 1983 to 1993. A series of natural fishing experiments over this period involving marine reserves were monitored at each island, where estimates of fishing intensity and selectivity were available. Fishing intensity (15% and 25% of biomass removed per year at Sumilon and Apo, respectively) was high enough to affect total community biomass, but not density, significantly. Species richness was not affected significantly by fishing, except at Sumilon reserve. The fishery was relatively non-selective with most families/trophic groups caught roughly in proportion to their contribution to community biomass. Thus fishing did not alter the relative abundance of the major families/trophic groups significantly, except during a period of use of explosives and drive nets in the Sumilon reserve. At the level of family/trophic group the community displayed strong resilience of structure. There was little evidence of secondary effects e.g. declines in abundance of large predators resulting in measurable increases in abundance of their prey. This resilience of the community to the effects of fishing most likely results from three important community attributes (open nature of the component populations, likely maintenance of upstream recruitment supply and apparent lack of any obvious “keystone” species or families) and one important characteristic of the fishery (relatively non-selective with respect to the components of the community). Accepted: 30 June 1998     

Effects of individual life-history traits and weather on reproductive output of Black-headed Gulls Larus ridibundus breeding in the Wadden Sea, 1991–97

Capsule Annual breeding success was relatively constant and is shown to be related to clutch size and growth rate and to be positively affected by rain during egg-laying and advanced chick-rearing phase.

Aims To provide the first long-term data on breeding success of Black-headed Gulls in the Wadden Sea, to analyse its intrinsic and environmental co-variates, and to re-assess the significance of the severe winter 1995/96 on reproduction.

MethodsIn a relatively small colony at the Wadden Sea coast, clutches were selected randomly and enclosed to determine clutch size, egg biometrics, hatching and breeding success, and chick development in 1991 and from 1994 to 1997. Weather data (temperature, rain, wind) were related to life-history traits (clutch size, egg volume, chick development) and reproductive success.

Results Mean annual breeding success was 0.7 fledglings per pair. In 1996, breeding success tended to be lower and chick growth rate was significantly lower. Hatching success was lower in small clutches, chick mortality increased with decreasing chick growth rate. Rain during the egg-laying phase increased clutch size and decreased clutch predation. Rain during the early post-natal phase impaired chick growth. Rain during the phase of linear growth affected chick growth and fledging success positively and brood predation negatively.

Conclusions Breeding success of Black-headed Gulls breeding in the Wadden Sea is relatively constant between years, probably due to the use of terrestrial and marine feeding habitats. Rain may increase the availability of intertidal and terrestrial prey and thus may affect time budgets and food provisioning of parents positively. Lower breeding success in 1996 might have been caused by a relatively dry breeding season and possibly by the preceding severe winter.     

Population structure and marker–trait associations for pomological traits in peach and nectarine cultivars

Marker–trait associations based on populations from controlled crosses have been established in peach using markers mapped on the peach consensus map. In this study, we explored the utility of unstructured populations for association mapping to determine useful marker–trait associations in peach/nectarine cultivars. We used 94 peach cultivars representing local Spanish and modern cultivars from international breeding programs that are maintained at the Experimental Station of Aula Dei, Spain. This collection was characterized for pomological traits and was screened with 40 SSR markers that span the peach genome. Population structure analysis using STRUCTURE software identified two subpopulations, the local and modern cultivars, with admixture within both groups. The local Spanish cultivars were somewhat less diverse than modern cultivars. Marker–trait associations were determined in TASSEL with and without modelling coefficient of membership (Q) values as covariates. The results showed significant associations with pomological traits. We chose three markers on LG4 because of their proximity to the endoPG locus (freestone–melting flesh) that strongly affects pomological traits. Two genotypes of BPPCT015 marker showed significant associations with harvest date, flavonoids and sorbitol. Also, two genotypes of CPPCT028 showed associations with harvest date, total phenolics, RAC, and total sugars. Finally, two genotypes of endoPG1 showed associations with flesh firmness and total sugars. The analysis of linkage disequilibrium (LD) revealed a high level of LD up to 20 cM, and decay at farther distances. Therefore, association mapping could be a powerful tool for identifying marker–trait associations and would be useful for marker-assisted selection in peach breeding.     

Does breeding ecology alter selection on developmental and life history traits? A case study in two Ambystomatid salamanders

Terrestrial breeding with extended incubation has evolved repeatedly in fishes and amphibians but raises challenges for embryos, which must conserve sufficient yolk to continue development until water is available. One means of avoiding premature yolk consumption is for embryos to slow their development such that yolk is consumed more slowly. However slower development is associated with smaller adult body sizes and lower survivorship, particularly in amphibians occupying ephemeral habitats. The variable breeding strategies of Ambystomatid salamanders provide an excellent system in which to examine whether variation in breeding ecology is associated with divergence in embryonic development. Phylogenies of Ambystoma strongly support aquatic egg-laying and winter breeding as ancestral. Early breeding has evolved in three species and terrestrial breeding in two of the three. We propose that early, terrestrial breeding has altered selection on embryonic development. In particular, we propose that the prolonged incubation typically associated with early, terrestrial breeding has selected for longer development times. We compared embryonic development of the terrestrial breeding Ambystoma opacum (Gravenhorst 1807) with the co-occuring, aquatic breeding Ambystoma maculatum (Shaw 1802) under a range of laboratory conditions over two breeding seasons. We found that A. opacum embryos took longer to develop and hatched at a later stage, consistent with the hypothesis that early, terrestrial breeding favors embryos that extend development.     

Total mercury and methylmercury dynamics in upland–peatland watersheds during snowmelt

Wetlands, and peatlands in particular, are important sources of methylmercury (MeHg) to susceptible downstream ecosystems and organisms, but very little work has addressed MeHg production and export from peatland-dominated watersheds during the spring snowmelt. Through intensive sampling, hydrograph separation, and mass balance, this study investigated the total mercury (THg) and MeHg fluxes from two upland–peatland watersheds in Minnesota, USA during the 2005 spring snowmelt and proportionally attributed these fluxes to either peatland runoff or upland runoff. Between 26% and 39% of the annual THg flux and 22–23% of the annual MeHg flux occurred during the 12-days snowmelt study period, demonstrating the importance of large hydrological inputs to the annual mercury flux from these watersheds. Upland and peatland runoff were both important sources of THg in watershed export. In contrast to other research, our data show that peatland pore waters were the principal source of MeHg to watershed export during snowmelt. Thus, despite cold and mostly frozen surface conditions during the snowmelt period, peatland pore waters continued to be an important source of MeHg to downstream ecosystems.     

Targeted re-sequencing and genome-wide association analysis for wood property traits in breeding population of Eucalyptus tereticornis × E. grandis

Globally, Eucalyptus plantations occupy 22 million ha area and is one of the preferred hardwood species due to their short rotation, rapid growth, adaptability and wood properties. In this study, we present results of GWAS in parents and 100 hybrids of Eucalyptus tereticornis × E. grandis using 762 genes presumably involved in wood formation. Comparative analysis between parents predicted 32,202 polymorphic SNPs with high average read depth of 269-562× per individual per nucleotide. Seventeen wood related traits were phenotyped across three diverse environments and GWAS was conducted using 13,610 SNPs. A total of 45 SNP-trait associations were predicted across two locations. Seven large effect markers were identified which explained more than 80% of phenotypic variation for fibre area. This study has provided an array of candidate genes which may govern fibre morphology in this genus and has predicted potential SNPs which can guide future breeding programs in tropical Eucalyptus.     

Can overwintering versus diapausing strategy in <Emphasis Type="Italic">Daphnia</Emphasis> determine match–mismatch events in zooplankton–algae interactions?

Mismatches between predator and prey due to climate change have now been documented for a number of systems. Ultimately, a mismatch may have far-reaching consequences for ecosystem functioning as decoupling of trophic relationships results in trophic cascades. Here, we examine the potential for climate change induced mismatches between zooplankton and algae during spring succession, with a focus on Daphnia and its algal food. Whereas the development of an overwintering population of daphnids may parallel shifts in phytoplankton phenology due to climate warming, changes in the photoperiod–temperature interaction may cause the emerging population of daphnids to hatch too late and mismatch their phytoplankton prey. A decoupling of the trophic relationship between the keystone herbivore Daphnia and its algal prey can result in the absence of a spring clear water phase. We extended an existing minimal model of seasonal dynamics of Daphnia and algae and varied the way the Daphnia population is started in spring, i.e., from free swimming individuals or from hatching resting eggs. Our model results show that temperature affects the timing of peak abundance in Daphnia and algae, and subsequently the timing of the clear water phase. When a population is started from a small inoculum of hatching resting eggs, extreme climate warming (+6°C) results in a decoupling of trophic relationships and the clear water phase fails to occur. In the other scenarios, the trophic relationships between Daphnia and its algal food source remain intact. Analysis of 36 temperate lakes showed that shallow lakes have a higher potential for climate induced match–mismatches, as the probability of active overwintering daphnids decreases with lake depth. Future research should point out whether lake depth is a direct causal factor in determining the presence of active overwintering daphnids or merely indicative for underlying causal factors such as fish predation and macrophyte cover. Priority program of the German Research Foundation—contribution 5.     

Experimentally reduced root–microbe interactions reveal limited plasticity in functional root traits in Acer and Quercus

Background and Aims

Interactions between roots and soil microbes are critical components of below-ground ecology. It is essential to quantify the magnitude of root trait variation both among and within species, including variation due to plasticity. In addition to contextualizing the magnitude of plasticity relative to differences between species, studies of plasticity can ascertain if plasticity is predictable and whether an environmental factor elicits changes in traits that are functionally advantageous.

Methods

To compare functional traits and trait plasticities in fine root tissues with natural and reduced levels of colonization by microbial symbionts, trimmed and surface-sterilized root segments of 2-year-old Acer rubrum and Quercus rubra seedlings were manipulated. Segments were then replanted into satellite pots filled with control or heat-treated soil, both originally derived from a natural forest. Mycorrhizal colonization was near zero in roots grown in heat-treated soil; roots grown in control soil matched the higher colonization levels observed in unmanipulated root samples collected from field locations.

Key Results

Between-treatment comparisons revealed negligible plasticity for root diameter, branching intensity and nitrogen concentration across both species. Roots from treated soils had decreased tissue density (approx. 10–20 %) and increased specific root length (approx. 10–30 %). In contrast, species differences were significant and greater than treatment effects in traits other than tissue density. Interspecific trait differences were also significant in field samples, which generally resembled greenhouse samples.

Conclusions

The combination of experimental and field approaches was useful for contextualizing trait plasticity in comparison with inter- and intra-specific trait variation. Findings that root traits are largely species dependent, with the exception of root tissue density, are discussed in the context of current literature on root trait variation, interactions with symbionts and recent progress in standardization of methods for quantifying root traits.