Isolation and characterization of microsatellite loci in Merluccius australis and cross-species amplification

Eight novel and two heterologous microsatellite pairs of primers are presented for the Austral hake (Merluccius australis), representing the first microsatellite markers available for this species. Loci were characterized for 50 individuals from two populations in South America (Argentinean and Chilean coasts). All loci were polymorphic within M. australis (5 to 30 alleles per locus; observed heterozygosity between 0.320 and 0.840), and therefore useful for population genetic studies within the species. Cross-species transferability was tested for 100 individuals from four additional species within the Merluccius genus (M. albidus, M. bilinearis, M. gayi and M. hubbsi), and results indicate that most of these primers pairs will likely be useful for population genetic studies on Merluccius species.     

Identification of commercial hake and grenadier species by proteomic analysis of the parvalbumin fraction

Analysis of parvalbumin fractions through proteomic methodologies allowed the differential classification of ten commercial, closely related species of the family Merlucciidae. Muscle extracts from nine hake species of the genus Merluccius including two subspecies of Merluccius australis (australis and polylepsis) and one grenadier species Macruronus novaezelandiae with two populations (novaezelandiae and magellanicus) were evaluated by 2-DE and MALDI-TOF MS. 2-DE demonstrated that the species tested displayed a low intra-specific degree of polymorphism and the isoform patterns were noticeably species-specific. MALDI-TOF mass fingerprints showed clear differences in the pattern of peptides produced by tryptic digestion between the Merluccius and the Macruronus, making the genus differentiation possible. In addition, a selective peptide mass present in the spectra from certain hakes allowed its classification in two groups: Euro-African and American hakes. Besides, some specific masses allowed a clearly individual identification for M. bilinearis, M. australis polylepsis, M. australis australis, M. productus, M. paradoxus and M. polli, while the rest of the hake species can be grouped in two clusters, comprising M. hubbsi and M. gayi in one and M. merluccius and M. capensis in the other.     

Endoparasite fauna of five Gadiformes fish species from the coast of Chile: host ecology versus phylogeny

The aims of the present study were to compare, using multivariate analyses, the degree of similarity of the endoparasite fauna of five fish species belonging to the order Gadiformes: Merluccius gayi, Merluccius australis, Macruronus magellanicus (Gadoidei) and Micromesistius australis and Nezumia pulchella (Macrouroidei), from the southern and central Chilean coast, and to evaluate whether the composition of the endoparasite fauna was determined by phylogenetic or ecological relationships. We employed our database of Merluccius australis, M. magellanicus and Micromesistius australis, which was complemented with published information for M. magellanicus, Merluccius australis, Micromesistius australis, M. gayi and N. pulchella. A higher number of endoparasite species was recorded for Merluccius australis, Micromesistius australis and M. magellanicus, namely Anisakis sp. and Hepatoxylon trichiuri, which is the most prevalent parasite among these hosts. Aporocotyle wilhelmi and Hysterothylacium sp. were detected only in M. gayi, whereas Lepidapedon sp. was found exclusively in N. pulchella. These results suggest that fish ecology rather than host phylogeny was the most important factor for the determination of similarity in parasite composition. This result could be explained by the similar trophic patterns of hosts and by the predominance of generalist larval species among these fish parasite communities.     

Feeding strategy and cannibalism of the Argentine hake Merluccius hubbsi

The diet composition and feeding strategy of the Argentine hake Merluccius hubbsi in the San Matías Gulf were analysed in order to use this information for the sustainable management of the fishery. Merluccius hubbsi behaved as an opportunistic predator. Small M. hubbsi consumed planktonic crustaceans, whereas medium and large fish ate numerous prey taxa with low frequency of occurrence and variable specific abundance. Intra- and intercohort cannibalism were detected in all size groups and were particularly significant in large M. hubbsi. Medium-sized M. hubbsi consumed small conspecifics and large-sized M. hubbsi consumed both small and medium M. hubbsi. These results indicate that the removal of large M. hubbsi by fishing may increase the risk of overfishing by two combined effects: a direct effect of recruitment-overfishing and an indirect effect of growth-overfishing through an enhanced cannibalism of medium M. hubbsi on small M. hubbsi. Intra- and intercohort cannibalism and other trophic relationships in the M. hubbsi should therefore be considered explicitly in stock assessment models.     

Notes on the biology of the Patagonian hake, Merluccius hubbsi (Marini), the southern blue whiting, Micromesistius australis (Norman) and others in the Falkland Islands shelf area

From the examination of samples of fish caught in two commercial surveys on trawling grounds around the Falkland Islands, it is noted that Patagonian hake, Merluccius hubbsi , southern blue whiting, Micromesistius australis , and others occurred in fishable quantities especially to the east of Beauchêne Islands where fishes were larger and more numerous. However 47% of the total catch consisted of southern blue whiting which was 100% infested by a myxosporidian parasite in its musculature rendering it unsuitable for human consumption.     

SSU rDNA analysis of Kudoa rosenbuschi (Myxosporea) from the Argentinean hake Merluccius hubbsi

The cloning and sequencing of the small subunit (SSU) ribosomal DNA gene from Kudoa rosenbuschi (myxosporean species associated with post-mortem myoliquefaction process in the Argentinean hake Merluccius hubbsi) is reported. The SSU rDNA was found to contain 1740 bp with a single polymorphic site with either a C or T at position 221. The sequence data obtained in this study and those known sequences of Kudoa species deposited in the GenBank were all analyzed to construct a phylogenetic tree. Nucleotide sequences showed the highest degree of identity with K. funduli, followed by K. miniauriculata, K. clupeidae and K. dianae. Phylogenetic analysis placed K. rosenbuschi in the same branch of K. clupeidae and K. funduli, and showed it to be closely related to K. dianae, K. paniformis and K. miniauriculata.     

Larval development of Argentine hake Merluccius hubbsi

The ontogeny of the developmental stages of the hake Merluccius hubbsi is described. Fish larvae and post-transitional juveniles were collected in the Nor-Patagonian area from 1989 to 2004. The opening of the mouth and the pigmentation of the eyes are coincident with yolk resorption, finishing the yolk-sac stage. This species presents pigmentation on the head, trunk and tail typical of gadiform larvae. Pectoral fin development is completed during the transformation stage. The post-transitional juvenile stage begins when the fin-ray complements are complete and squamation begins. The fins become fully formed in the following sequence: pelvic fins, first dorsal fin, second dorsal and anal fins together, caudal fin and pectoral fins. The caudal complex is totally developed in larvae of 22·0–23·0 mm standard lengths ( L _S) and all vertebral elements are first observed in larvae of 8·5 mm L _S. The rate of development of M. hubbsi observed in this study could be faster than the rates reported for other species of Merluccius by different authors.     

The use of electrophoresis of the water-soluble (sarcoplasmic) proteins of fish muscle to differentiate the closely related species of hake (Merluccius sp.).

1. Electrophoretic separation patterns of water-soluble proteins of five species of hake, Merluccius merluccius; M. australis; M. productus; M. bilinearis and M. angustimanus, have been examined. 2. The patterns were reproducible within each species and distinguishable from one another. 3. The frequency distribution of numbers of vertebrae and of gillrakers were obtained for the same fish. 4. Only the electrophoretic patterns gave an unequivocal identification of the species.     

Contrasting energy allocation strategies of two sympatric Merluccius species in an upwelling system

This study investigated the somatic growth and energy allocation strategy of two sympatric hake species (Merluccius polli and Merluccius senegalensis), coexisting under the strong influence of the Mauritanian upwelling. The results revealed that ontogeny, bathymetry, geography and reproduction shaped the differences found between the condition dynamics of the two species. Aside from species‐specific differences, individuals were observed in better condition in the northernmost area (more influenced by the permanent upwelling) and in the deepest waters, probably the most favourable habitat for Merluccius spp. Both species also displayed contrasting trade‐offs in energy allocation probably due to the dissimilarity of their habitats, which favours the existence of divergent adaptive strategies in response to different ontogenic requirements. It was hypothesized that M. polli invests in mass and energy reserves while sacrificing growth, as larger sizes may not provide an ecological advantage in a deeper and more stable environment. Moreover, M. senegalensis capitalizes on a steady growth without major disruptions, enabling earlier spawning at the expense of a lower somatic mass, which is fitting to a less stable shallower environment. This study sheds new light on differences in the biological traits and life strategies of Merluccius spp., which permit their overlap in a complex upwelling system and may contribute to the long‐lasting scientific‐based management of these species.     

New tools (DNA barcoding), old hypothesis: the case of the taxonomic identity of the Argentine hakes (Actinopterygii: Merluccius)

The present study evaluated the possible occurrence of cryptic species among Merluccidae from Argentina by examining sequences of cytochrome c oxidase subunit I (coI) mtDNA. This approach can discriminate Merluccius hubbsi and Merluccius australis; specimens with morphological diagnostic characters of Merluccius patagonicus formed a cohesive cluster with M. hubbsi specimens. BIN analysis confirmed the effectiveness of barcoding within a global context.     

Mycobacterium kumamotonense Sp. Nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: Novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex

Three mycobacterium strains isolated from clinical specimens in Japan were provisionally assigned to the genus Mycobacterium based on their phenotypical characteristics. These isolates were further investigated to determine their specific taxonomic statuses. Mycolic acid analysis and 16S rRNA gene, rpoB, and hsp65 sequence data for the isolates showed that they are most similar to M. terrae complex. DNA-DNA hybridization studies indicated that the three strains were of two species and were distinguishable from M. terrae, M. nonchromogenicum, and M. hiberniae. Therefore, these strains represent two novel species within the genus Mycobacterium. However, one potential new species should have been considered as M. arupense with the 16S rRNA gene and hsp65 sequences similarities of 99.8% and 100% respectively; it was isolated from human specimens in the United States and was proposed in June 2006 as a new species. This report describes the first isolation of M. arupense in Japan, suggesting that the organism is clinically relevant. In addition, we propose the novel species designation Mycobacterium kumamotonense sp. nov. The type strain is CST 7247(T) (=GTC 2729(T), =JCM 13453(T), =CCUG 51961(T)).     

First record of the twostripe goby,Valenciennea helsdingenii (Gobiidae,Gobiiformes) from the?southeast?coast of India

Two specimens of Valenciennea helsdingenii (Bleeker, 1858) were collected off Punnakayal coast, from Gulf of Mannar, southeast coast of India in November 2012. The morphometric and meristic characters of the recorded specimens are described and discussed. This is the first record of the species from the Indian waters that is a range extension of its known range within the Indian Ocean.     

鲂属团头鲂、三角鲂及广东鲂种间遗传关系及种内遗传差异

采用形态判别、同工酶分析和RAPD分析相结合的方法,从3个层次研究分析了鲂属团头鲂、三角鲂和广东鲂的种间亲缘关系和种内遗传差异。结果表明：（1）3种鲂在形态可数性状上差异不显著,而可量性状与框架分析揭示团头鲂与三角鲂亲缘关系较近,它们同广东鲂差异较大;（2）团头鲂和三角鲂均具有MDH同工酶的s-Mdh-D位点,而广东鲂未见,引物S11扩增的结果在3种鲂间均显示种的特异性,这些同工酶谱带和DNA扩增带可作为3种鲂的种间分子标记;（3）3种鲂种间亲缘关系在三个研究层面上相互吻合：即广东鲂和头鲂、三角鲂差异较大,亲缘关系较远,而三角鲂和团头鲂之间差异小,亲缘关系较近;（4）同工酶和RAPD分析揭示,三角鲂种内遗传多样性显著地高于广东鲂和团头鲂。     

大眼华鳊和伍氏华鳊的形态差异及其物种有效性

分别对大眼华鳊和伍氏华鳊 137尾标本 7个可数性状和 18个可量性状进行主成分分析 ,以探讨这两个种之间的形态差异及其物种有效性。研究结果显示 :无论是在可数性状上还是可量性状上 ,大眼华鳊和伍氏华鳊之间的形态差异并不显著 ,而且大眼华鳊大陆的标本和台湾的标本无明显的不同。此表明 ,大眼华鳊和伍氏华鳊应该为同一个种。根据国际动物命名法规 ,伍氏华鳊应是大眼华鳊的次定同物异名。     

First record of <Emphasis Type="Italic">Liparis frenatus</Emphasis> (Gilbert et Burke, 1912) and new findings of <Emphasis Type="Italic">L. kusnetzovi</Emphasis> Taranetz, 1935 (Pisces: Liparidae) in Russian waters of the Sea of Japan

Two specimens of Liparis frenatus (Gilbert et Burke, 1912) of 30.1 and 55.5 mm in TL were recorded in Russian waters of the Sea of Japan for the first time. Five specimens of a poorly known species, L. kusnetzovi Taranetz, 1935, were found. Data on the areas of capture and counts of plastic and meristic characters are provided. The specimens of L. frenatus and L. kusnetzovi are described and compared to the closest species of the genus.     

Changes in otolith area: sensory area ratio with body size and depth

Synopsis The ratio between the sensory areas of the sulcus acusticus and the sagittal otolith (S : O ratio) in the species Merluccius capensis and M. paradoxus was analyzed using a digital image processing system. Sagittal growth in both species is negatively allometric with respect to total fish length but is more negative in the deeper-dwelling species, Merluccius paradoxus. In contrast, the sulcus acusticus undergoes a relative increase in size, that is, the S : O ratio increases with fish length. There was a clear relationship between the increase in the S : 0 ratio and depth.     

Citharichthys gnathus, a new species of paralichthyid flounder (Teleostei: Pleuronectiformes) from the Galapagos Islands, eastern pacific Ocean

A new paralichthyid flounder,Citharichthys gnathus, is described from 25 specimens from the Galapagos Islands. The new species strongly resemblesC. fragilis Gilbert, distributed in the Gulf of California and adjacent waters, in general appearance, and meristic and morphometric characters, but is distinguished from the latter by two adult characters, a remarkable bony knob at the anterior tip of the lower jaw and larger proportion of snout length in standard length.     

Mitochondrial DNA analyses of the Cape hakes reveal an expanding, panmictic population for Merluccius capensis and population structuring for mature fish in Merluccius paradoxus

The Cape hake species, Merluccius capensis and Merluccius paradoxus are the most important resource of the South African and Namibian demersal fishery, but it is unclear whether there is a single population of each shared by both countries. We analysed the population structure and evolutionary history of these two species using the variable 5' region of the mtDNA control region for 311 specimens of M. capensis and 333 specimens of M. paradoxus sampled between Lüderitz (southern Namibia) to south of Cape Point (South Africa). 107 haplotypes for M. capensis and eight haplotypes for M. paradoxus were recovered. AMOVA and pairwise Phi(st) analyses revealed no structure in M. capensis, however significant genetic differentiation between Namibian and South African 'populations' was detected for M. paradoxus. This was only restricted to mature fish older than 3 and 4 years and not for juvenile fish younger than 3 years. Analyses reveal that M. capensis has undergone population expansion (Fu's Fs=-26.65, P<0.001), possibly within the last 4500-23,000 years, whereas M. paradoxus has not. Our study highlights the utility of genetic markers to unravel the evolutionary history of sympatric species, as well as addressing management issues within regions where commercially valuable fish stocks are shared between nations.     

Taxonomic status of three nominal species of Indo-Pacific symphurine tonguefishes (Symphurus: Cynoglossidae: Pleuronectiformes)

The taxonomic status of three rarely captured, nominal species of Indo-Pacific symphurine tonguefishes,Symphurus trifasciatus (Alcock, 1894),S. microrhynchus (Weber, 1913), andS. holothuriae Chabanaud, 1948, is resolved.Symphurus microrhynchus, previously known only from three specimens, is redescribed based on 12 specimens.Symphurus holothuriae, previously reported only from the holotype, is a junior subjective synonym ofS. microrhynchus. Symphurus trifasciatus is redescribed based on six specimens, including the lectotype designated in this study.Symphurus microrhynchus is distinguished from congeners by a combination of meristic features, head and opercle shape, dorsalfin position, and features of its pigmentation. The species occurs in relatively shallow tropical waters from Zanzibar through French Polynesia (the only reported occurrence of a shallow-waterSymphurus from a locality on the Pacific Plate), including Indonesia, Papua New Guinea, Vietnam, and northwestern Australia.Symphurus trifasciatus, known from deep waters along both coasts of the Indian subcontinent and adjacent waters, has an overall similarity in body shape and meristic features reminiscent of those inS. microrhynchus, but differs notably in having a longer and wider head, a distinctive opercle shape, number of scale rows on the head, and pigmentation pattern.     

中国叉丝壳属分类研究——Ⅴ.忍冬科上的新种和已知种

本文报道寄生于我国忍冬科植物上的叉丝壳属白粉菌5个种:双盾叉丝壳Microsphacra dipeltae Yu et Lai sp. nov., 二郎山叉丝壳M. erlangshanensis Yu sp. nov.,忍冬叉丝壳M. lonicerae(DC.)Winter,万布叉丝壳M. van-brunctiana Gerard和荚蒾叉丝壳M.viburni(Duby)Blumer,前二者为新种;对新种作了汉文和拉丁文描述,并附有形态图。每一个种都列有寄主种类和国内外分布,并讨论了它们与邻近种之间的区别。