Habitat Use of Fish Communities in A Virginia Stream System

Fish habitat use during summer was examined at micro- and meso-levels, to determine species associations in the upper Roanoke River watershed, Virginia. Based on multivariate-mesohabitat analysis and examination of mean microhabitat use, seven habitat-use guilds were apparent. These included four rheophilic (fast-riffle, riffle/run, fast-generalist, and shallow-rheophilic) and three limnophilic guilds (pool/run, open-pool, and pool-cover) that were reasonably robust across two river segments and two years. Although simple-hydraulic, bottom-topographic, and turbulence variables all segregated fish habitat-use guilds, turbulence variables were redundant with simple-hydraulic variables, substratum use by limnophilic fishes was related to availability, and only one guild consistently selected high cover levels. At the family level, suckers, darters, and especially minnows were notable for occupying several habitat-use guilds, because of species differences in habitat preferences. Such formulation of guilds can simplify habitat-impact analyses in biodiverse, warmwater streams, via focus on habitat needs of guilds rather than on individual species.     

Biodiversity and Structure of Macroinvertebrate Communities Along a Small Permanent Salinity Gradient (Meurthe River,France)

Changes in the macroinvertebrate community were investigated over 10 months at four sites along a 19 km salinity gradient (0.21–2.60 g l⁻¹) in a sixth-order stream, the Meurthe River, northeastern France. Abiotic characteristics other than salinity were similar between the sites. Macroinvertebrate taxonomic richness decreased by 30% downstream of the 1.4 g l⁻¹ sites while diversity, evenness or total abundance of taxa did not change along the gradient. In terms of functioning, a slight change in relative abundances of invertebrate feeding groups followed the salinity gradient. Eight invertebrate assemblages occurred within specific salinity distributions were identified. The exotics Gammarus tigrinus, Dreissena polymorpha, Corbicula fluminalis and Corophium curvispinum, were more abundant at the highest salinity site. These results suggest that rising salinity concentrations drastically affect the species composition, including favouring exotic species.     

Implications of a Hierarchical Relationship Among Channel Form,Instream Habitat,and Stream Communities for Restoration of Channelized Streams

Hierarchy theory provides a conceptual framework for understanding the influence of differently scaled processes on the structure of stream communities. Channel form, instream habitat, and stream communities appear to be hierarchically related, but the strength of the relationships among all components of this hypothesized hierarchy have not been examined. We sampled channel form, instream habitat, fishes, and macroinvertebrates in a channelized stream in Mississippi and Alabama to examine the hypothesis that a hierarchical relationship exists among channel form, instream habitat, and stream communities. Instream habitat, fishes, and macroinvertebrates were sampled in May, July, and September 2000. Measurements of channel form were obtained in July 2000. Mantel tests, multiple regressions, and correlation analyses were used to assess strength of the relationships among channel form, instream habitat, and stream communities. Positive correlations were observed between channel form and instream habitat, and correlations observed between these factors were the greatest observed in our study. Overall, fish and macroinvertebrate communities exhibited stronger relationships with instream habitat than with channel form. Species richness, evenness, and abundance tended to exhibit greater correlations with instream habitat, while species composition had greater correlations with channel form. We concluded that channel form, instream habitat, and stream communities were hierarchically related.     

Stream Fish Communities and Environmental Correlates in the Red River of the North, Minnesota and North Dakota

In the Red River of the North (Red River) drainage in Minnesota and North Dakota, there are strong east–west hydrological and chemical environmental gradients. Historical fish surveys indicated the presence of species with both widespread and restricted distributions, leading to unique fish communities in several streams. To determine the important physiochemical correlates of stream fish community structure, we partitioned 25 streams into 46 large reaches by ecoregion classification. The reaches were then characterized from sampling during 1962–1994 by the frequency of occurrence of 76 fish species and 12 landscape-level hydrologic and chemical factors. In canonical correspondence analysis, the first two axes explained 56% of the species–environment relationship, and indicated that coefficient of variation of mean monthly discharge, minimum discharge in May, and residue were the most important factors correlated with fish community composition. Important covariates of residue were specific conductance, dissolved sulfate, and total hardness of waters. Certain catostomids, Hypentelium nigricans and Moxostoma valenciennesi, cyprinids, Notropis anogenus and N. texanus, ictalurids, Ameiurus natalis, and percids, Etheostoma caeruleum and E. microperca, all correlated highly with habitats characterized by low-flow variability, high discharges, and low residue, conductivity, and hardness. Reaches with these characteristics included the Otter Tail River in the Red River Valley, North Central Hardwoods (NCH), and the Northern Minnesota Wetlands (NMW) ecoregions; the Pelican River in the NCH ecoregion; and the Red Lake River in the NMW ecoregion. The results of this analysis support the hypothesis that regional environmental conditions are important in structuring fish communities in northern streams. As conditions are altered in the future by anthropogenic factors at the landscape scale, our exploratory multivariate model can be used to predict fish community response and support conservation efforts aimed at preserving or restoring unique and/or rare small fishes in the Red River and other, similar stream systems.     

北京及其邻近地区野生鱼类物种多样性及其资源保育

作者2002-2010年间,连续多年对北京及周边地区的野生鱼类进行了实地调查和采集,结合对中国科学院动物研究所国家动物博物馆馆藏鱼类标本及相关文献资料的整理,得出北京及其邻近地区分布过的鱼类计有93种,隶属于13目23科73属;去除引入种,自然分布于该地区的原生野生鱼类为85种(包括经通海河流上溯至区域内的河口咸淡水、...     

Habitat and Fish Fauna Structure in a Subtropical Mountain Stream in Taiwan before and after a Catastrophic Typhoon

Habitats and fish populations of a subtropical mountain stream in Taiwan were surveyed before and after the hit of super-typhoon Herb in July 1996. There was a significant decrease in total pool area and an increase in total riffle area. Upper stream habitat was more susceptible to the disturbance. Relative abundance of the species was significantly correlated before and after the typhoon (rs=0.89, p<0.001). Morisita's index of similarity for the fish communities in June 1996 and October 1997 ranged between 0.82 and 1.02 for seven out of nine stations. Most common cyprinids decreased in densities after Herb, but recovered seventeen months after the typhoon. There were only minor changes in fish community fourteen months after the typhoon. Cyprinids that are smaller in size, such as Candidia barbata and Abottina brevirostris alticorpus were affected the most. Gobiid Rhinogobius nantaiensis that is well adapted to riffle habitat was unaffected throughout the surveys. The results of this study suggested that in subtropical mountain stream, severe typhoon may significantly alter the habitats, but the impact on fish populations could be relatively small due to features of these mountain species.     

Classification of macroinvertebrate communities across drainage basins in Victoria, Australia: consequences of sampling on a broad spatial scale for predictive modelling

1. Spatial scale may influence the interpretation of environmental gradients that underlie classification and ordination analyses of lotic macroinvertebrate communities. This could have important consequences for the spatial scale over which predictive models derived from these multivariate analyses can be applied. 2. Macroinvertebrate community data (identified to genus or species) from edge and main-channel habitats were obtained for sites on rivers from 25 of the 29 drainage basins in Victoria. Trends in community similarity were analysed by carrying out separate multivariate analyses on data from the edge habitats (199 sites) and the main-channel habitats (163 sites). 3. Hierarchical classification (UPGMA) showed that the edge data could be placed into 11 site groups and the main-channel data into 12 site groups. 4. Ordination analysis (hybrid multidimensional scaling) showed no sharp disjunctions between site groups in either habitat; overlap was frequent. Correlation of the ordination patterns with environmental variables showed that edge communities varied longitudinally within a drainage basin and from the east to the west of Victoria. These two trends were superimposed on one another to form a single gradient on the ordination. The taxon richness of edge communities was also related to the species richness of macrophytes at a site. Main-channel communities also displayed a longitudinal and a geographic gradient, but these two gradients were uncorrelated on the ordination. 5. Community similarity only weakly reflected geographic proximity in either habitat. A preliminary subdivision of Victoria into a series of biogeographic regions did not match the pattern of distribution of site groups for the edge habitat, illustrating the difficulties of applying to lotic communities a priori regionalizations based on terrestrial features of the landscape. 6. The longitudinal gradients in the two data sets were commonly observed in data gathered at smaller spatial scales in Victoria. The other gradients (geographic, macrophyte), however, were either not consistently repeated or not evident at smaller spatial scales. At small spatial scales (i.e. within a single drainage basin) gradients were related to variables that varied over restricted ranges, e.g. mean particle size of the substratum. 7. Species richness was very variable when plotted against river slope or distance of site from source; both of these are measures of position on the longitudinal gradients. In contrast to suggestions in the literature, species richness did not show a unimodal trend on these gradients, or any other trend. 8. Environmental gradients (apart from longitudinal gradients) that underlie predictive models of macroinvertebrate distribution are reflections of the spatial scale on which the model has been constructed and cannot be extrapolated to different scales. Models must be suited to the spatial scale over which predictions are required.     

Effects of Predation Risk on Habitat Selection by Water Column Fish, Benthic Fish and Crayfish in Stream Pools

Predation risk can affect habitat selection by water column stream fish and crayfish, but little is known regarding effects of predation risk on habitat selection by benthic fish or assemblages of fish and crayfish. I used comparative studies and manipulative field experiments to determine whether, (1) habitat selection by stream fish and crayfish is affected by predation risk, and (2) benthic fish, water column fish, and crayfish differ in their habitat selection and response to predation risk. Snorkeling was used to observe fish and crayfish in, (1) unmanipulated stream pools with and without large smallmouth bass predators (Micropterus dolomieui >200 mm total length, TL) and (2) manipulated stream pools before and after addition of a single large smallmouth bass, to determine if prey size and presence of large fish predators affected habitat selection. Observations of microhabitat use were compared with microhabitat availability to determine microhabitat selection. Small fish (60–100 mm TL, except darters that were 30–100 mm TL) and crayfish (40–100 mm rostrum to telson length; TL) had significantly reduced densities in pools with large bass, whereas densities of large fish and crayfish (> 100 mm TL) did not differ significantly between pools with and without large bass. Small orangethroat darters (Etheostoma spectabile), northern crayfish (Orconectes virilis), and creek chubs (Semotilus atromaculatus) showed significantly greater densities in pools without large bass. The presence of large smallmouth bass did not significantly affect depths selected by fish and crayfish, except minnows, which were found significantly more often at medium depths when bass were present. Small minnows and large and small crayfish showed the greatest response to additions of bass to stream pools by moving away from bass locations and into shallow water. Small darters and sunfish showed an intermediate response, whereas large minnows showed no significant response to bass additions. Response to predation risk was dependent on prey size and species, with preferred prey, crayfish and small minnows, showing the greatest response. Small benthic fish, such as darters, are intermediate between small water column fish and crayfish and large water column fish in their risk of predation from large smallmouth bass.     

A Large-scale Comparative Analysis of Riffle and Pool Fish Communities in an Upland Stream System

Fishes were sampled in riffle and pool habitats at 74 upland localities in the Little River system, southeastern Oklahoma and southwestern Arkansas, U.S.A. I asked how these two habitat-defined communities differed with regard to species abundance and incidence patterns, and how these differences varied along othree environmental gradients: elevation, stream gradient, and stream size. Riffle and pool communities showed distinct and significant differences when ordinated in multivariate space defined by species abundance patterns. Sites with similar pool communities did not have similar riffle communities, and riffle and pool communities responded to environmental gradients in different ways. Elevation was the best predictor of pool community structure, whereas stream size was the best predictor of riffle communities. Overall, riffle habitats had fewer species than pool habitats and formed significant subsets of pool communities at 12 of 74 sites. I predicted that at small stream localities where riffles were unstable, riffle species would form subsets of the pool species communities, and both community types should show high similarities. The presence of faunal subsets was not associated with stream size, but faunal similarities were significantly higher at small stream localities. At the species level, 14 species were significantly associated with pool habitats, while only two were associated with riffle habitats. Riffle and pool communities, although linked by a continuous habitat gradient at the local scale, responded differently to large-scale environmental gradients. Local differences between these communities were predictable based on stream size.     

Use of Biochemical Endpoints to Determine Relationships between Contaminants and Impaired Fish Health in a Freshwater Stream

Bayou Bartholomew is a low gradient stream predominantly influenced by agricultural inputs and stormwater discharge from the urban areas of Pine Bluff, Arkansas. Preliminary studies indicated induction of hepatic cytochrome P450 1A protein (CYP1A) and CYP1A-catalyzed enzyme activity (ethoxyresorufin O-deethylase-EROD) in several fish species collected in the waterway, which meanders through residential areas of Pine Bluff, and forested regions in the outskirts of the city. Largemouth bass (Micropterus salmoides) showed CYP1A repression and a lack of correlation between CYP1A and EROD activity. In addition, hepatic heme oxygenase activity was elevated in several species and demonstrated an inverse relationship with hepatic CYP1A. Hepatic metallothionein was unchanged in any species collected from these locations. Four years after this evaluation, sediments were collected and analyzed for agents that could be mechanistically consistent with the biochemical responses observed. Utilizing seven criteria for causality, these data indicated that PCBs appear to be at least one group of agents responsible for the biological effects observed in fish species from the upper Bayou Bartholomew. While this supports causality under the criteria, further studies in this waterway would strengthen the relationship between this class of compound and the effects observed in resident fish species.     

Recovery of Potamogeton pectinatus L. stands in a shallow eutrophic lake under extreme grazing pressure

In shallow lakes, submerged macrophytes contribute to the stabilization of the clear water state. If lost, a number of mechanisms prevent re-colonization. Lake Müggelsee (730 ha) lost its submerged vegetation due to increasing eutrophication and switched to phytoplankton dominance in 1970. After the reduction of nutrient loading in 1990, Potamogeton pectinatus L. started re-colonizing the lake. During the following years, it spread at a mean rate of 2.5 ha per year to all available areas <80 cm depth. Between 1993 and 1999, decreasing maximum biomass indicated hampered growth. Exclosure experiments revealed that herbivory reduced the aboveground biomass by more than 90%. Both waterfowl and fish were found to contribute to the grazing pressure despite a low abundance of the known herbivorous fish species and waterfowl in spring and summer. Protection of stands against grazing resulted in higher biomass of shoots, whereas shoot and tuber density did not change. Both shading by phytoplankton and periphyton, as well as grazing pressure, prevented the submerged vegetation of Lake Müggelsee from developing back to a dense zone that contributed to the reduction of turbidity.     

Effects of Biomanipulation on Fish and Plankton Communities in Ten Eutrophic Lakes of Southern Finland

The effects of biomanipulation were studied in ten Finnish lakes to determine responses in fish and plankton communities and water quality after mass removal of cyprinids. From 1997 to 2001, the fish communities shifted from the dominance of large cyprinids to an explosion of small cyprinids and a higher proportion of piscivores in effectively biomanipulated lakes (>200 kg ha⁻¹ 3 yr⁻¹). The biomass of cyanobacteria decreased, and the duration of the blooms shortened and shifted towards the autumn. Decreased concentrations and slower cycling of nutrients and increased grazing by cladocerans probably affected the declined biomass of cyanobacteria. Less intensive sediment disturbance and increased phosphorus-retention in fast growing fish biomass may have turned the role of the fish assemblage from ‘nutrient recycler’ to ‘nutrient storage’. Increased potential grazing pressure, higher proportion of edible algae, and lower chlorophyll a:total phosphorus ratio indicated strengthened herbivore control. A high mass removal catch in relation to trophic state, low background turbidity, and bearable external loading favoured the successful biomanipulation, whereas intensive cyprinid reproduction, high nutrient loading and non-algal turbidity hindered the recovery. Three important issues should be noticed before biomanipulation in Finland: (1) careful selection of target lake, (2) well-planned, effective and long-lasting biomanipulation and (3) sustainable management of piscivores. An erratum to this article is available at .     

Stream corridor restoration research: a long and winding road

Stream corridor restoration research and practice is presented as an example of the application of ecology and engineering to solve a class of environmental problems. Interest and public investment in stream corridor restoration has increased sharply in developed nations over the last two decades, as evidenced by the volume of technical and refereed literature. However, real progress at the regional and national scale depends on successful research outcomes. Research addressing problems associated with stream corridor ecosystem restoration is beset by numerous problems. First, terms referring to restoration are loosely defined. Secondly, stream ecosystems are not amenable to rigorous experimental design because they are governed by a host of independent variables that are heterogeneous in time and space, they are not scalable, and their response times are often too long for human attention spans. These problems lead to poorly controlled or uncontrolled experiments with outcomes that are not reproducible. Extension of results to other sites or regions is uncertain. Social factors further complicate research and practice—riparian landowners may or may not cooperate with the experiment, and application of findings normally occurs through a process of suboptimal compromise. Economic issues, namely assigning costs for present and future ecosystem services that provide off-site benefits, further impede progress. Clearly, the situation calls for a hybrid approach between the rigor of the ecologist and the judgment and pragmatism of the engineer. This hybrid approach can be used to develop creative, low-cost approaches to address key factors limiting recovery.     

Microbial Diversity in Ngari,Hentak and Tungtap,Fermented Fish Products of North-East India

Ngari, hentak and tungtap are traditional fermented fish products of North-East India. Eighteen samples of ngari, hentak and tungtap were collected and were analysed for microbial load. Lactic acid bacteria, endospore-forming rods, yeasts and aerobic mesophilic counts ranged from 4.0 to 7.2, 3.3–4.6, <1–3.5 and 4.3–7.3 log c.f.u./g, respectively. Lactic acid bacteria were identified as Lactococcus lactis subsp. cremoris, Lactococcus plantarum, Enterococcus faecium, Lactobacillus fructosus, Lactobacillus amylophilus, Lactobacillus coryniformis subsp. torquens and Lactobacillus plantarum. Endospore-forming rods were identified as Bacillus subtilis and Bacillus pumilus, aerobic coccal strains were identified as Micrococcus. Yeasts were identified as species of Candida and Saccharomycopsis. Pathogenic contaminants were detected in all samples, however, none of the sample contained more than 10² c.f.u./g of Bacillus cereus, 10³ c.f.u./g of Staphylococcus aureus and enterobacteriaceae population, respectively. Enzymatic and antimicrobial activities of the isolates were tested. None of the strains produced biogenic amines in the method applied. Most strains of LAB had a high degree of hydrophobicity, indicating their ‘probiotic’ characters. This study has demonstrated the microbial diversity within the species of lactic acid bacteria, Bacillus and yeasts. This revised version was published online in July 2006 with corrections to the Cover Date.     

The influence of ants on patterns of colonization and establishment within a set of coexisting lycaenid butterflies in a south-east Asian tropical rain forest

In Peninsular Malaysia ten species of lycaenid butterflies use leaf flushes or inflorescences of the legume tree Saraca thaipingensis as larval hostplant. Resource partitioning among these species is regulated by a complex mixture of patterns of interaction with ants. Females of obligately myrmecophilous species lay their eggs exclusively on trees colonized by their specific host ants. On trees colonized by weaver ants, only specialist mutualists adapted to these territorial ants are able to survive, while larvae of other species are killed. The formicine ant Cladomyrma petalae, which inhabits hollow twigs of the myrmecophytic hostplant, likewise precludes oviposition by female butterflies. Lycaenid larvae confronted with this ant species never survive, but one concealed feeding species (Jamides caeruleus) escapes removal due to the cryptic life-habits of the larvae. Two facultative myrmecophiles associate in a mutualistic way with a wide and largely overlapping range of ant genera which forage at the extrafloral nectaries of leaf flushes. One species (Cheritra freja) is not myrmecophilous, but is tolerated by all but the most territorial ants. Ant-dependent hostplant selection and egg-clustering characterize the obligate mutualists, whereas facultative myrmecophiles and the non-myrmecophile distribute their eggs singly over appropriate hostplants. Signals mediating caterpillar-ant communication are highly specialized in one obligate myrmecophile (Drupadia theda), but rather unspecific in four other species tested. Altogether our observations indicate that colonization and establishment of lycaenid butterflies on S. thaipingensis trees are governed by specializations as well as opportunistic use of resources (ants and hostplant parts). Therefore, the diversity of this species assemblage is maintained by deterministic as well as stochastic factors.     

Relative Importance of Bacteria and Fungi in a Tropical Headwater Stream: Leaf Decomposition and Invertebrate Feeding Preference

Bacteria and fungi provide critical links between leaf detritus and higher trophic levels in forested headwater food webs, but these links in tropical streams are not well understood. We compared the roles of bacteria and fungi in the leaf decomposition process and determining feeding preference for two species of freshwater shrimp found in the Luquillo Experimental Forest, Puerto Rico, using experimental microcosms. We first tested the effects of four treatments on decomposition rates for leaves from two common riparian species, Cecropia scheberiana (Moraceae) and Dacryodes excelsa (Burseraceae), in laboratory microcosms. Treatments were designed to alter the microbial community by minimizing the presence of bacteria or fungi. The fastest decay rate was the control treatment for D. excelsa where both bacteria and fungi were present (k = −0.0073 day⁻¹) compared to the next fastest rate of k = −0.0063 day⁻¹ for the bacterial-conditioned D. excelsa leaves. The fastest decay rate for C. scheberiana was also the control treatment (k = −0.0035 day⁻¹), while the next fastest rate was for fungal-conditioned leaves (k = −0.0029 day⁻¹). The nonadditive effect for leaf decomposition rates observed in the control treatments where both fungi and bacteria were present indicate that bacteria and fungi perform different functions in processing leaf litter. Additionally, leaf types differed in microbial colonization patterns. We next tested feeding preference for leaf type and microbe treatment in microcosms using two species of freshwater shrimp: Xiphocaris elongata, a shredder, and Atya lanipes, a scraper/filterer. To estimate feeding preferences of individual shrimp, we measured change in leaf surface area and the amount of particles generated during 5-day trials in 16 different two-choice combinations. X. elongata preferred D. excelsa over C. scheberiana, and leaves with microbial conditioning over leaves without conditioning. There was no clear preference for fungal-conditioned leaves over bacterial-conditioned leaves. This lack of preference for which microbes were responsible for the conditioning demonstrates the importance of both bacterial and fungal resources in these tropical stream food web studies.     

Antioxidant Defenses in Fish: Biotic and Abiotic Factors

Oxygen in its molecular state O₂, is essential for many metabolic processes that are vital to aerobic life. Aerobic organisms cannot exist without oxygen, which nevertheless is inherently dangerous to their lives. Like all aerobic organisms, fish are also susceptible to the effects of reactive oxygen and have inherent and effective antioxidant defenses that are well described in the literature. This review investigates the influence of different biotic and abiotic factors (age, phylogenetic position, feeding behavior, environmental factors, oxygen, temperature, presence of xenobiotics) on antioxidant defenses in fish. Studies of antioxidant activity in fish open a number of novel research lines providing greater knowledge of fish physiology, which will benefit various aspects of fish farming and artificial production.     

Relationships between water,nutrients and productivity in Australian forests: Application to wood production and quality

The application of knowledge of water and nutrient relationships to improve forest management is discussed from an Australian perspective. The objectives of tree planting and forest management have become diverse, and there are outstanding examples of successful application of research results to forestry.Experiments seeking to explain the way water and nutrients influence growth tend to use treatments designed to ensure large differences in growth to increase the opportunities for identifying the mechanisms involved. The application of results from such research to many forestry situations, however, is harder than from research in which there is a closer match between treatments and management practices. The expectations of process-based models as management tools for economic decision-making is yet to be fulfilled. More progress is required in our ability to predict accurately the effects of soil and stand management practices on the production of marketable wood.The extent to which results of research on silvicultural practices are applied in practice is ultimately dependent upon economic return from investment. Water and nutrient relations have a significant influence on production, harvest index and log and wood quality. Recognition and understanding of this influence and the availability of management-oriented growth models incorporating process-based information, will permit better assessment of potential returns from management options.