Calculation of the grain charge fluctuations in a dusty plasma

The time characteristics of grain charging, namely, the relaxation time of the steady grain charge and the charge fluctuations of grains of different sizes, are computed from particle simulations. The results obtained are compared with some theoretical predictions (primarily those derived from the drift-diffusion model). The simulations are carried out for nonmoving and moving two-temperature argon plasmas.     

Surface waves and space charge layers in a spatially inhomogeneous plasma

A theory of surface waves in a layer of a spatially inhomogeneous cold electron plasma is presented. Four types of surface waves are revealed, and the conditions under which they can exist are determined. Complex frequency spectra are obtained, and the mechanisms for wave damping by plasma inhomogeneity are discussed.     

Potential surface waves in anisotropic plasma

The dependences of the frequency and damping rate of a potential surface wave on the wavenumber and the degree of anisotropy of a bi-Maxwellian electron distribution characterized by different temperatures along and across the plasma surface are established. It is demonstrated that the influence of electron thermal motion along the plasma surface on the surface wave properties is similar to the influence of thermal motion on the properties of a bulk Langmuir wave. On the contrary, thermal motion across the surface qualitatively affects the dispersion relation and substantially increases the damping rate.     

Potential application of dot-immunobinding assay as a rapid diagnostic test in tuberculous meningitis

A simple dot-immunobinding assay (Dot-Iba) in nitrocellulose paper was developed for the detection of specific IgG antibody to Mycobacterium tuberculosis antigen 5 and mycobacterial antigen in cerebrospinal fluid of patients with tuberculous meningitis (TBM). The assay gave 77.1% sensitivity for the detection of IgG antibody to M. tuberculosis antigen 5 and 48.6% sensitivity for the detection of mycobacterial antigen in patients with TBM.     

Screening of the dust grain charge in a nonequilibrium plasma with two positive ion species

The screening of the grain charge in a nonequilibrium plasma is studied with allowance for electron and ion fluxes to the grain surface and the bulk processes of production and loss of charged particles in an argon plasma. The objective of the paper is to investigate how the conversion of monatomic Ar⁺ ions into diatomic Ar₂⁺ ions influences the screening of the dust grain charge in a plasma produced by an external gas ionization source. It is found that the conversion of positive ions leads to the onset of a second ion species in the plasma and, as a consequence, to a three-exponential screening of the grain charge; moreover, in a certain range of plasma parameters, all three screening constants are of the same order of magnitude. Analytical results are compared with the data of numerical simulations carried out based on the drift-diffusion approximation.     

A method for calculating the effective charge of ions decelerated in a hot dense plasma

A method for calculating the effective charge of fast ions decelerated in a hot dense plasma is proposed. The method is based on the known experimental dependence of the effective charge of an ion decelerated in cold matter on its velocity. The ion velocity in this dependence is replaced with the velocity of an ion relative to plasma electrons, averaged over the Fermi-Dirac distribution. Using results of numerical calculations performed in a wide range of plasma parameters (from a Maxwellian plasma to a fully degenerate one), a scale-invariant representation of the effective charge of a decelerating ion as a function of its initial velocity and the plasma temperature and density is obtained. An analytical formula fitting the calculated results to within 5% is derived. The obtained dependences of the effective charge are incorporated in the model describing deceleration of fast ions in plasma. Using this model, the stopping powers of krypton and lead ions in a relatively cold rarefied gas-discharge plasma and hot ICF plasma are calculated. The results of calculations are shown to agree satisfactorily with available experimental data.     

Influence of resonant charge exchange on the viscosity of partially ionized plasma in a magnetic field

The influence of resonant charge exchange for ion-atom interaction on the viscosity of partially ionized plasma embedded in the magnetic field is investigated. The general system of equations used to derive the viscosity coefficients for an arbitrary plasma component in the 21-moment approximation of Grad’s method is presented. The expressions for the coefficients of total and partial viscosities of a multicomponent partially ionized plasma in the magnetic field are obtained. As an example, the coefficients of the parallel and transverse viscosities for the ionic and neutral components of the partially ionized hydrogen plasma are calculated. It is shown that the account for resonant charge exchange can lead to a substantial change of the parallel and transverse viscosity of the plasma components in the region of low degrees of ionization on the order of 0.1.     

Changes in the surface charge of plasma lipoproteins during their auto-oxidation

Low density lipoproteins (LDL) and high density lipoproteins (HDL) surface potential (charge) changes were studied upon autooxidation, using positively charged spin probes. Lipid peroxidation product accumulation in LDL and HDL suspensions was found to be accompanied by a significant reduction in their surface area associated with a decreased negative surface charge, and probably, deposition of lipid peroxidation polar products and/or surface charge redistribution as a result of lipoprotein autooxidative modification.     

Potential plasma lipid biomarkers in early-stage breast cancer

Objective

To find new biomarkers for early diagnosis of breast cancer.

Results

847 lipid species were identified from 78 plasma samples (37 breast cancer samples and 41 healthy controls) by ultra HPLC coupled with quadrupole time-of-flight tandem mass spectrometry. These include 321 glycerophospholipids (GPs), 265 glycerolipids (GLs), 91 sphingolipids (SPs), 77 fatty acyls (FAs), 68 sterol lipids (STs), 18 prenol lipids (PRs), 6 polyketides (PKs), and 1 saccharolipid (SL). Separation was observed from an orthogonal signal correction Partial Least Square Discrimination Analysis model. Based on this analysis, six differentiating lipids were identified: PC (20:2/20:5), PC (22:0/24:1), TG (12:0/14:1), and DG (18:1/18:2) had high levels, whereas PE (15:0/19:1) and N-palmitoyl proline had low levels in the breast cancer samples compared with the healthy controls. Furthermore, significant differences in metabolites were found among some clinical characteristics.

Conclusions

Our results reveal that six specific lipids could serve as potential biomarkers for early diagnosis of breast cancer.

     

Detection of peptidoglycan in human plasma using the silkworm larvae plasma test

Silkworm larvae plasma (SLP) reagent, which is prepared from the body fluid of the silkworm, reacts with peptidoglycan (PG), a fragment of both the Gram-positive and Gram-negative bacterial cell wall, as well as with beta-glucan, a component of fungi. We developed a quantitative method for the detection of PG in human plasma from cases with bacterial infection using the SLP reagent. Tested in this way, the SLP method showed 86.2% sensitivity, 90.6% specificity, 89.3% positive predictive value, and 88.5% efficiency. The SLP method provides a valuable tool for the diagnosis of systemic infection using patients' blood.     

Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens

Whole‐genome shotgun sequencing of multispecies communities using only a single library layout is commonly used to assess taxonomic and functional diversity of microbial assemblages. Here, we investigate to what extent such metagenome skimming approaches are applicable for in‐depth genomic characterizations of eukaryotic communities, for example lichens. We address how to best assemble a particular eukaryotic metagenome skimming data, what pitfalls can occur, and what genome quality can be expected from these data. To facilitate a project‐specific benchmarking, we introduce the concept of twin sets, simulated data resembling the outcome of a particular metagenome sequencing study. We show that the quality of genome reconstructions depends essentially on assembler choice. Individual tools, including the metagenome assemblers Omega and MetaVelvet, are surprisingly sensitive to low and uneven coverages. In combination with the routine of assembly parameter choice to optimize the assembly N50 size, these tools can preclude an entire genome from the assembly. In contrast, MIRA, an all‐purpose overlap assembler, and SPAdes, a multisized de Bruijn graph assembler, facilitate a comprehensive view on the individual genomes across a wide range of coverage ratios. Testing assemblers on a real‐world metagenome skimming data from the lichen Lasallia pustulata demonstrates the applicability of twin sets for guiding method selection. Furthermore, it reveals that the assembly outcome for the photobiont Trebouxia sp. falls behind the a priori expectation given the simulations. Although the underlying reasons remain still unclear, this highlights that further studies on this organism require special attention during sequence data generation and downstream analysis.     

Potential of a dust grain in a nitrogen plasma with a condensed disperse phase at room and cryogenic temperatures

The first numerical study is presented of the self-consistent potential of a dust grain in a nitrogen plasma with a condensed disperse phase at room and cryogenic temperatures and at high gas pressures for which the electron and ion transport in the plasma can be described in the hydrodynamic approximation. It is shown that the potential of the dust grain is described with good accuracy by the Debye potential, in which case, however, the screening radius turns out to be larger than the electron Debye radius. The difference between the radii is especially large in a plasma with high ionization rates (about 10¹⁶–10¹⁸ cm^?3 s^?1) at room temperature. It is found that, in a certain range of the parameters of a nitrogen dusty plasma, the parameter describing the interaction between the grains exceeds the critical value above which one would expect the formation of plasma-dust structures such as Coulomb crystals. For a plasma at cryogenic temperature (T=77 K), this range is significantly wider.     

Roles of plasma proteins and surface negative charge of erythrocytes in erythrocyte aggregation

The effect of plasma proteins (and IgG fragments) and sialic acid content of erythrocytes on the aggregation of human erythrocytes was quantitatively examined by using a rheoscope combined with a television image analyser and a computer. (1) The velocity of erythrocyte aggregation by plasma proteins was increased with increasing in their molecular weight, i.e., IgG less than IgA less than fibrinogen less than IgM. F(ab')2. Fab and Fc could not induce the aggregation. (2) The aggregation induced by fibrinogen was accelerated by IgG and its peptic fragment, F(ab')2, but was unaffected by the plasmic fragments, Fab and Fc. The accelerating effect by IgG and F(ab')2 was inhibited by Fab and Fc. (3) The aggregation of erythrocytes was accelerated by decreasing the sialic acid content (due to the reduction of the electrostatic repulsive force among erythrocytes), and the effect of desialylation on the IgG-induced aggregation was greater than that of desialylation on the fibrinogen-induced aggregation. (4) The roles of plasma proteins and of sialic acid content of erythrocytes on the aggregation of erythrocytes were discussed.     

Surface charge of plasma lipoproteins from the data of potentiometric studies

The method of potentiometric titration is used to measure a surface very low, low- and high-density charge of the human blood plasma lipoproteins. Density of the surface charges is -0.5 X 10(-2); -0.2 X 10(-2); -3.4 X 10(-2) K/m2, respectively. The surface area of the lipoproteins determined by the method of radiation-free energy transfer between fluorescent probes amounts to 185.9; 241.7 and 426.8 m2 per 1 g of lipoprotein, respectively. Results of the experiments satisfactorily coincide with the data, obtained by other methods.     

Investigation of the charge and potential of a dust grain in a low-pressure plasma with allowance for ionization in the intergrain space

The formation of the ion flow to a dust grain and the distribution of the electric potential in a low-pressure dusty plasma are investigated theoretically with allowance for ionization in the intergrain space. Poisson’s equation similar to the Langmuir plasma-sheath equation is solved numerically with the use of partial analytic solutions at the boundary of the Seitz-Wigner cell and in thin layers in the intergrain space. The charge and potential of a dust grain are found as functions of the grain radius and cell size. The grain potential and the total cell potential energy as functions of the cell size display weak minima, whose positions correspond to the observed intergrain distance in dusty crystals.     

Isolation of plasma membrane from amphibian epidermis: evidence for a basal-to-apical charge and activity gradient

Aqueous two-phase partition and preparative free-flow electrophoresis were used in series to isolate the plasma membranes of amphibian epidermis. Fractions obtained by two-phase partition were 40-fold enriched in a K+-stimulated, ouabain-inhibited, p-nitrophenylphosphatase relative to the total homogenate and based on morphology were representative isolates of all epidermal cells together. Small mucosal granules and mucin aggregates were the primary contaminants. Based on activities of marker enzymes, contents of mitochondria, Golgi apparatus and endoplasmic reticulum were low (0.15 that of total homogenate) or absent. When plasma membranes isolated by aqueous two-phase partition were subjected to preparative free-flow electrophoresis, they were distributed toward the anode in a series of fractions of increasing net negative charge, sialic acid content and specific activity of the K+-stimulated, ouabain-inhibited, p-nitrophenylphosphatase reminiscent of the activity gradient from base to apex for frog epidermis observed from cytochemical investigations. The most electronegative fractions nearest the anode and to the left of the main protein peak were enriched in both sulfate groups and thick membranes of the stratum corneum. A fraction migrating less toward the anode and to the right of the main protein peak contained hemidesmosomes together with the lowest enrichments of sialic acid, sulfate and the phosphatase. The results suggest that the plasma membranes isolated from mixed cell populations, such as those encountered in epidermal homogenates, may be resolved by free-flow electrophoresis according to cell type of origin following activity gradients present in the original tissue. Additionally, the findings provide independent biochemical confirmation of a base-to-apex gradient of transport (ATPase) activity associated with the plasma membranes of cells of the different strata of the amphibian epidermis.     

Potential charge transfer probe induced conformational changes of model plasma protein human serum albumin: Spectroscopic, molecular docking, and molecular dynamics simulation study

The nature of binding of specially designed charge transfer (CT) fluorophore at the hydrophobic protein interior of human serum albumin (HSA) has been explored by massive blue-shift (82 nm) of the polarity sensitive probe emission accompanying increase in emission intensity, fluorescence anisotropy, red edge excitation shift, and average fluorescence lifetimes. Thermal unfolding of the intramolecular CT probe bound HSA produces almost opposite spectral changes. The spectral responses of the molecule reveal that it can be used as an extrinsic fluorescent reporter for similar biological systems. Circular dichrosim spectra, molecular docking, and molecular dynamics simulation studies scrutinize this binding process and stability of the protein probe complex more closely.     

Confidence intervals for the mean of diagnostic test charge data containing zeros

In this paper, we consider the problem of interval estimation for the mean of diagnostic test charges. Diagnostic test charge data may contain zero values, and the nonzero values can often be modeled by a log-normal distribution. Under such a model, we propose three different interval estimation procedures: a percentile-t bootstrap interval based on sufficient statistics and two likelihood-based confidence intervals. For theoretical properties, we show that the two likelihood-based one-sided confidence intervals are only first-order accurate and that the bootstrap-based one-sided confidence interval is second-order accurate. For two-sided confidence intervals, all three proposed methods are second-order accurate. A simulation study in finite-sample sizes suggests all three proposed intervals outperform a widely used minimum variance unbiased estimator (MVUE)-based interval except for the case of one-sided lower end-point intervals when the skewness is very small. Among the proposed one-sided intervals, the bootstrap interval has the best coverage accuracy. For the two-sided intervals, when the sample size is small, the bootstrap method still yields the best coverage accuracy unless the skewness is very small, in which case the bias-corrected ML method has the best accuracy. When the sample size is large, all three proposed intervals have similar coverage accuracy. Finally, we analyze with the proposed methods one real example assessing diagnostic test charges among older adults with depression.