Biomass of extramatrical ectomycorrhizal mycelium and fine roots in a young Norway spruce stand — a study using ingrowth bags with different substrates

Background and aims

The partitioning of below ground carbon inputs into roots and extramatrical ectomycorrhizal mycelium (ECM) is crucial for the C cycle in forest soils. Here we studied simultaneously the newly grown biomass of ECM and fine roots in a young Norway spruce stand.

Methods

Ingrowth mesh bags of 16 cm diameter and 12 cm height were placed in the upper soil and left for 12 to 16 months. The 2 mm mesh size allowed the ingrowth of fungal hyphae and roots whereas a 45 μm mesh size allowed only the ingrowth of hyphae. The mesh bags were filled with either EA horizon soil, pure quartz sand or crushed granite. Controls without any ingrowth were established for each substrate by solid tubes (2010) and by 1 μm mesh bags (2011). The fungal biomass in the substrates was estimated by the PLFA 18:2ω6,9 and ECM biomass was calculated as difference between fungal biomass in mesh bags and controls.

Results

The maximum ECM biomass was 438 kg ha^?1 in October 2010 in 2 mm mesh bags with EA substrate, and the minimum was close to zero in 2011 in 45 μm mesh bags with quartz sand. The high P content of the crushed granite did not influence the ECM biomass. Fine root biomass reached a maximum of 2,343 kg ha^?1 in October 2010 in mesh bags with quartz sand after 16 months exposure. In quartz sand and crushed granite, ECM biomass correlated positively with fine root biomass and the number of root tips, and negatively with specific root length.

Conclusion

The ratio of ECM biomass/fine root biomass in October ranged from 0.1 to 0.3 in quartz sand and crushed granite, but from 0.7 to 1.8 in the EA substrate. The results for the EA substrate suggest a large C flux to ECM under field conditions.     

The effect of heparin on the porcine lymphocyte chromatin—I. The comparative study of DNA in different chromatin fractions

• 1.1. Porcine lymphocyte chromatin in the solution of 0.15 M NaCl + 0.01 M Tris. pH 7 treated with heparin liberated 30% protein and 7.5% DNA to the supernatant.
• 2.2. DNA from the supernatant and the pellet fractions as well as from control chromatin were isolated in identical conditions.
• 3.3. No significant changes were observed in spectral properties and melting points in SSC of comparable DNA specimens.
• 4.4. It was noted, however, that DNA of the supernatant is subject to denaturation in the process of isolation, which, apart from the difference in protein composition of the supernatant and the pellet fractions, suggests different chromatin structure of these fractions.

     

Spitsbergen glacial bays macrobenthos – a comparative study

Macrobenthos was studied in seven glacial bays situated along the Spitsbergen coast between 77 and 79°N. The fauna was dominated by deposit-feeding or carnivorous polychaetes and bivalves. Only 4 of 118 species identified in the collected material occurred in all the west Spitsbergen localities examined (the polychaetes Chaetozone/Tharyx sp., Cossura longocirrata, Lumbrinereis fragilis s.l. (sensu lato), and the bivalve Thyasira flexuosa). Clustering of samples showed a difference between the faunas of east and west Spitsbergen; the latter formed two subgroups, localities open to Atlantic waters and those from inner fjord basins. The fauna in open basins was dominated by cosmopolitan species, whereas arctic elements shares were higher in inner basins and predominated in the fauna in Bettybukta (east Spitsbergen). This indicates arctic, relict character of the inner fjords sites. The biomass ranged from 6 to 310 g/m² and Shannon diversities from 0.49 to 2.54. Received: 16 July 1997 / Accepted: 9 February 1998     

Does size really matter? A comparative study on floral traits in orchids with two different pollination strategies

• The lock and key hypothesis assumes that male and female genitalia match in a unique system to prevent interspecific crosses. This hypothesis is largely investigated in animals, while there is a distinct lack of studies on plants. Nevertheless, we expect the lock and key hypothesis could apply to plants with complex floral morphologies, such as orchids.
• Here we apply a comparative approach to examine the variation of floral functional traits in food‐ and sex‐deceptive orchids. To understand if a specific deception strategy is related to a specific variation in floral traits evaluated the variation in sterile and fertile traits among species and subsequently examined the correlations between male and female reproductive organs of the same species with the aim of investigating the role of the lock and key hypothesis in deceptive orchids.
• Our results show that the functional morphology of fertile traits plays a pivotal role in limiting gene flow in species that grow in sympatry. In particular, it was observed that the Reproductive Standardisation Index (RSI) is significantly different in the two pollination strategies and that the correlation between pollinarium length and stigmatic cavity length is stronger in food‐deceptive species when compared to the sex‐deceptive species.
• These results reveal that the lock and key hypothesis contributes to maintain boundaries in plants with very complex floral morphology.

     

Production of biomass, carotenoid and other lipid metabolites by several red yeast strains cultivated on waste glycerol from biofuel production – a comparative screening study

This study was focused on a comparison of growth and production properties of seven red yeast strains of the genus Rhodotorula, Sporobolomyces and Cystofilobasidium cultivated on glycerol substrate. Production of enriched yeast biomas and specific yeast metabolites (carotenoids, ergosterol, lipids) was evaluated on medium with glucose, pure technical glycerol and/or waste glycerol from biofuel production (40 g/L) and mixture of glycerol and glucose (1:3, 1:1, 3:1; C/N ratio 57 in all cultivations). All tested strains were able to utilize glycerol as the only carbon source. Production of biomass on waste glycerol was in most strains higher than in control as well as in medium with pure technical glycerol and reached 15.97–21.76 g/L. Production of carotenoids and ergosterol was better in glucose medium than in medium with glycerol only. Nevertheless, using glycerol medium with addition of glucose, higher yields of total carotenoids, beta-carotene and ergosterol were obtained than in control. The highest yields of total pigments were reached by Sporobolomyces roseus (3.60 mg/g cell dry weight (CDW); glycerol:glucose 1:3), Sporobolomyces salmonicolor (2.85 mg/g CDW; glycerol:glucose 1:3) and Rhodotorula glutinis (2.80 mg/g CDW; glycerol:glucose 3:1) In glucose medium, most tested strains except Cystofilobasidium capitatum (22.6 %) produced neutral lipids in the range of 11–15 %. Production of triacylglycerols in all strains was in 10–30 % better in glycerol medium, in which Rhodotorula aurantiaca and Sporobolomyces shibatanus also reached intracellular triacylglycerol concentrations up to 20 % of biomass. This study has shown that oleaginous red yeasts could have great potential for converting crude glycerol to valuable lipids and carotenoids in respect of efficient bioresources utilization.     

Activity and stability of hyperthermophilic enzymes: a comparative study on two archaeal β-glycosidases

Sβgly and CelB are well-studied hyperthermophilic glycosyl hydrolases, isolated from the Archaea Sulfolobus solfataricus and Pyrococcus furiosus, respectively. Previous studies revealed that the two enzymes are phylogenetically related; they are very active and stable at high temperatures, and their overall three-dimensional structure is very well conserved. To acquire insight in the molecular determinants of thermostability and thermoactivity of these enzymes, we have performed a detailed comparison, under identical conditions, of enzymological and biochemical parameters of Sβgly and CelB, and we have probed the basis of their stability by perturbations induced by temperature, pH, ionic strength, and detergents. The major result of the present study is that, although the two enzymes are remarkably similar with respect to kinetic parameters, substrate specificity, and reaction mechanism, they are strikingly different in stability to the different physical or chemical perturbations induced. These results provide useful information for the design of further experiments aimed at understanding the structure–function relationships in these enzymes. Received: May 20, 1999 / Accepted: January 10, 2000     

Transferrin-receptor interaction and iron uptake by reticulocytes of vertebrate animals — a comparative study

Summary Transferrin-receptor interactions and iron uptake were studied in eleven different species of vertebrate animals (3 eutherian mammals, 3 marsupials, 2 reptiles and 1 bird, amphibian and bony fish). In the initial experiments it was shown that the uptake of transferrin-bound iron by immature erythroid cells from marsupial and reptilian species occurs by receptor-mediated endocytosis as in other vertebrate animals.Reticulocytes were incubated with¹²⁵I-⁵⁹Fe-labelled transferrins from heterologous species and the results for iron and transferrin uptake compared with those obtained with the homologous protein. Cells from eutherian mammals were able to take up transferrin and iron from other eutherians and from the bob-tailed lizard but not from marsupials and other submammalian species. With marsupials and reptiles a similar specificity was observed, and the marsupial cells could also utilize chicken transferrin but not vice versa.The results were extended by performing competition experiments in which the cells were incubated with radiolabelled homologous transferrin in the presence of increasing concentrations of non-radioactive heterologous transferrins. From the ability of the heterologous proteins to inhibit uptake of the homologous protein relative association constants (K _a ¹) for the transferrin-receptor interactions could be calculated. TheseK _a ¹ values reflected the patterns observed in the first series of experiments.These studies demonstrate that, although specificity exists in transferrin-receptor interactions throughout the range of vertebrate animals, in several instances reactivity between widely divergent species is also observed. Hence, structural similarities have been maintained throughout evolution. Nevertheless, no evidence of interaction between transferrin and its receptor from the two divisions of the Mammalia, the eutherians and the marsupials, was observed.Abbreviations BSS Hanks balanced salt solution - PBS phosphate-buffered saline - RRS Rana Ringer solution     

Where to sleep in a rural landscape? A comparative study of resting sites pattern in two syntopic Martes species

The niche‐complementarity hypothesis predicts that two sympatric species must differ in their requirements for one of the three main ecological dimensions (i.e. habitat use, diet, and activity time) to coexist. European pine marten Martes martes and stone marten M. foina are syntopic medium‐sized mustelids with very similar morphology and ecology for which resting sites are a key resource. To better understand how these species coexist, we investigated whether key features of their resting site pattern (number of resting sites, area over which they are distributed, main habitat type used for resting) differed. We used diurnal telemetry to identify resident individuals (e.g. spatially stable individuals over time) and to locate them during resting periods in a fragmented forested area in France. Stone marten used fewer resting sites distributed over a smaller surface area than pine marten. Most stone marten resting sites were located in open habitat (83%) in the proximity of human habitations, whereas pine martens rested almost exclusively in forest (98%). Sex, age, and season explained some variability in both the number of resting sites and the probability of resting within forested habitat for stone marten but not pine marten. The area covered by resting sites was larger in males than in females, but age modulated this difference in an opposite way for the two species. Such a pattern was expected given the intra‐sexual territoriality and the reproductive phenology of these species. Overall, stone marten showed higher inter‐individual variability in resting site pattern than pine marten. The particular pattern observed in subadult male stone martens during summer (increase in resting site surface area and in the probability to rest in forest) may reflect an attempt to settle in forests, and we discuss these implications in the context of interspecific competition.     

The heart—a different approach

The study of bryophytes forms an obvious part of school, college, and university courses which deal with cytology and developmental behaviour. They are readily obtained, conveniently cultured, and require fewer specialized skills than are necessary for similar work on other organisms. Information on preparing mitotic chromosomes for examination is provided, as are details of a technique by which Giemsa C-banding of chromosomes becomes for the first time a realistic proposition at all levels of education. Practical firsthand experience of the latter technique provides a useful way of coordinating the teaching of microscopic and molecular aspects of cell biology. Cytological behaviour can also be related to experiments on developmental aspects of the life cycle, a cycle which is noted for its well-marked alternation of generations. These include suggestions for monitoring the seasonal maturation of gametangia and sporophytes, as well as for examining photolropic responses made in liverworts by diploid setae and haploid archegoniophores.     

Effect of cadmium on physiological parameters of cereal and millet plants—A comparative study

Metal load is an abiotic stress that becomes stronger by continual industrial production, wastage, and long-range transport of contaminants. It deteriorates the conditions of agricultural soil that leads to lower growth of cereals as well as decreasing nutritional value of harvested grains. Cadmium (Cd) entry by food chain also affects the health of population. The present study is focused on finding out the superior cereal variety under increasing Cd regime. The plants were grown in increasing Cd levels (0–1000 µM) in the medium and were investigated on 15th day of the exposure. Various parameters like antioxidative enzymes and osmoprotectant levels were studied in both roots and shoots. Cd accumulation in plant organs was determined by atomic absorption spectrophotometry (AAS). Analysis of stress tolerance mechanisms through reactive oxygen species (ROS) scavenging and better partitioning of Cd in roots indicated kodo millet to be more stress tolerant than wheat.     

The aftermath of coral bleaching on a Maldivian reef—a quantitative study

Since the bleaching event of 1998, the development of the reef flat and upper reef slope on a Maldivian reef (the Komandoo house reef; Komandoo Island, Lhaviyani atoll or Fadiffolu atoll) is under detailed observation. We quantitatively recorded specific losses, re-colonisation by coral larvae on transects on the reef flat and on dead Acropora tables at the reef slope and regeneration of partly damaged large Porites and Diploastrea—colonies over the period from 1999 to 2004. The detrimental effects on the reef structure by bioerosion and hydrodynamics, as well as the overall status of the reef community were qualitatively assessed. Recruitment soon after the bleaching was more pronounced than in the following years, Pavona varians being a main constituent. The temporal re-colonisation pattern points at an emergency spawning of local Scleractinia just prior to the bleaching, whereas a sharp decrease of young settlers in 2001 and 2002 confirms a reduction of fertile colonies. The dominant species in the coral community shifted from acroporids and pocilloporids to agariciids. The skeletal deposition of recovering Diploastrea heliopora was equivalent to that before the bleaching, but much less than that of neighbouring Porites lobata colonies. The slow and scattered formation of new reef substance, which would structurally strengthen the reef, is however outweighed by the collapse of dead protruding and spacious colonies (e.g., Acropora tables). Six years after the bleaching, the formerly three-dimensional structure of the reef flat and upper reef slope presents as a levelled field of rubble, only partly consolidated by incrusting corals. Considering the recurrence of bleaching events (1987, 1998) and the results of the present study, one may assume a cascading deterioration of the status of the reef for the future.     

Visualization of lateral phases in cholesterol and phosphatidylcholine monolayers at the air/water interface — a comparative study with two different reporter molecules

This study has compared two chemically distinct NBD-lipids with regard to their partitioning properties into lateral phases of pure and mixed cholesterol/phosphatidylcholine monolayers. Pure NBD-cholesterol (22-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)-23,24-bisnor-5-cholen-3-ol), which has the NBD-function in the sterol side chain (at carbon 22), gave a liquid-expanded force-area isotherm on water at 22°C (having a compressibility of 0.005 to 0.007 m/mN), although epifluorescence microscopy of the compressed NBD-cholesterol monolayer revealed that it had a solid-like surface texture. When the compressed NBD-cholesterol monolayer was allowed to expand, it fragmented into large flakes (tens to hundreds of μm in width) which eventually dissolved into a liquid state. The force-area isotherm of pure NBD-phosphatidylcholine (1-hexadecanoyl-2-(12-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino)dodecyl-sn-glycero-3-phosphocholine) was also liquid-expanded. When a compressed (30 mN/m) monolayer of NBD-phosphatidylcholine was examined by microscopy, it displayed many bright crystalline spots (about 50 μm across) which appeared to form when the monolayer was allowed to stabilize at this lateral surface pressure. These bright spots disappeared when the monolayer was expanded. When the surface texture of a pure cholesterol monolayer was examined, both probes (at 1 mol%) partitioned very similarly in the sterol monolayer. At low lateral surface pressures (1 and 5 mN/m) the probes appeared to be excluded from the cholesterol phase, forming very bright liquid-like areas against a uniformly black cholesterol phase. At 30 mN/m, NBD-phosphatidylcholine appeared to distribute increasingly into the cholesterol phase, whereas NBD-cholesterol still did not to mix with cholesterol. The characteristic surface texture of the liquid-expanded to liquid-condensed lateral phase transition of pure dipalmitoyl phosphatidylcholine (DPPC) monolayers could be visualized identically with both probes, indicating that these were similarly excluded from the liquid-condensed solid phase of DPPC. Finally, in mixed monolayers containing cholesterol and DPPC (molar ratio 33:67), both probes (at 1 mol%) revealed a similar surface texture of the monolayers (examined at a lateral surface pressure of 0.5 mN/m), suggesting that these partitioned similarly between the different lateral phases present in the mixed monolayer. In conclusion, although the two NBD-probes differed from each other in chemical and physical properties, both acted like ‘impurities’ when admixed into pure or mixed monolayers, and appeared to be equally excluded from lateral phases in which the packing density was high.     

Rat small-intestinal β-galactosidases: Influence of pH on the hydrolysis of different substrates

1. The influence of pH and the kind of buffer on the hydrolysis of lactose and four hetero-β-galactosides (phenyl β-galactoside, o-nitrophenyl β-galactoside, p-nitrophenyl β-galactoside and 6-bromo-2-naphthyl β-galactoside) by homogenates of rat small-intestinal mucosa has been studied. 2. There are at least two β-galactosidases present in the homogenates, one with optimum pH3–4 and another with optimum pH5–6. 3. The enzyme with the lower pH optimum is mainly a heterogalactosidase. It hydrolyses lactose slowly. The other enzyme is mainly a disaccharidase, since it hydrolyses lactose much more rapidly than the heterogalactosides. 4. Under the conditions used, citrate had an inhibitory effect on the 6-bromo-2-naphthyl β-galactosidase activity at pH3–4, but did not influence the 6-bromo-2-naphthyl β-galactosidase activity at pH5–6 or the hydrolysis of the other substrates at any pH.     

Influence of hydroxypropyl-β-cyclodextrin on phytosterol biotransformation by different strains of Mycobacterium neoaurum

Cyclodextrins (CDs) can improve productivity in the biotransformation of steroids by increasing conversion rate, conversion ratio, or substrate concentration. However, little is known of the proportion of products formed by multi-catabolic enzymes, e.g., via sterol side chain cleavage. Using three strains with different androst-1,4-diene-3,17-dione (ADD) to androst-4-ene-3,17-dione (AD) ratios, Mycobacterium neoaurum TCCC 11028 (MNR), M. neoaurum TCCC 11028 M1 (MNR M1), and M. neoaurum TCCC 11028 M3 (MNR M3), we found that hydroxypropyl-β-cyclodextrin (HP-β-CD) can appreciably increase the ratio of ADD to AD, the reaction rate, and the molar conversion. In the presence of HP-β-CD, conversion of 0.5?g/L of phytosterol (PS) was 2.4, 2.4, and 2.3 times higher in the MNR, MNR M1, and MNR M3 systems, respectively, than in the controls. The ADD proportion increased by 38.4, 61.5, and 5.9?% compared with the control experiment, which resulted in a strong shift in the ADD/AD ratio in the ADD direction. Our results imply that the three PS-biotransforming strains cause efficient side chain degradation of PS, and the increased conversion of PS when using HP-β-CD may be associated with the higher PS concentration in each case. A similar solubilizing effect may not induce a prominent influence on the ADD/AD ratio. However, the different activities of the Δ(1)-dehydrogenase of PS-biotransforming strains result in different incremental percentage yields of ADD and ADD/AD ratio in the presence of HP-β-CD.     

Trabecular bone strains around a dental implant and associated micromotions—A micro-CT-based three-dimensional finite element study

The first objective of this computational study was to assess the strain magnitude and distribution within the three-dimensional (3D) trabecular bone structure around an osseointegrated dental implant loaded axially. The second objective was to investigate the relative micromotions between the implant and the surrounding bone. The work hypothesis adopted was that these virtual measurements would be a useful indicator of bone adaptation (resorption, homeostasis, formation).In order to reach these objectives, a μCT-based finite element model of an oral implant implanted into a Berkshire pig mandible was developed along with a robust software methodology. The finite element mesh of the 3D trabecular bone architecture was generated from the segmentation of μCT scans. The implant was meshed independently from its CAD file obtained from the manufacturer. The meshes of the implant and the bone sample were registered together in an integrated software environment. A series of non-linear contact finite element (FE) analyses considering an axial load applied to the top of the implant in combination with three sets of mechanical properties for the trabecular bone tissue was devised. Complex strain distribution patterns are reported and discussed. It was found that considering the Young’s modulus of the trabecular bone tissue to be 5, 10 and 15 GPa resulted in maximum peri-implant bone microstrains of about 3000, 2100 and 1400. These results indicate that, for the three sets of mechanical properties considered, the magnitude of maximum strain lies within an homeostatic range known to be sufficient to maintain/form bone. The corresponding micro-motions of the implant with respect to the bone microstructure were shown to be sufficiently low to prevent fibrous tissue formation and to favour long-term osseointegration.     

Vesicle deposition and subsequent membrane–melittin interactions on different substrates: A QCM-D experiment

Quartz crystal microbalance with dissipation (QCM-D) technique is one of the most effective methods to monitor the dynamic behaviors of a layer on a solid surface. Moreover, it has been reported recently that it is able to provide a fingerprint for the peptide–membrane interactions. In this work, QCM-D technique combined with computer simulations was employed to investigate the deposition and transformation of vesicles, as well as the subsequent membrane–melittin interactions on different substrates. A range of substrate surfaces, i.e. naked SiO₂ without or with Au/polyelectrolyte coating, were produced. The nature of the substrate determined whether the adsorbed vesicles were present as a high-quality supported bilayer or an assembled vesicle matrix, which consequently influenced the membrane–melittin interactions. It was indicated by the related computer simulations that the lipid packing state of the membrane was a key factor to determine the mechanism of membrane–peptide interactions. Furthermore, this work might be a good example of the application of QCM-D for the exploration of membrane-active peptides.     

Modelling and design of a high productivity ethanol process using Zymomonas mobilis — I

Growth kinetics and ethanol production of Zymomonas mobilis in a bioreactor with cell recycle were modelled. High specific growth rates can be used to control excessive biomass accumulation in the system. Predicted peak productivity with a cell concentration of 80 g l⁻¹, a dilution rate of 6.5 h⁻¹, and a feed glucose concentration of 120 g l⁻¹ is 350 g l⁻¹ h⁻¹. The design of a special recycle reactor using a filter which should permit the operating conditions required for the validation of the model is proposed.