Early post-metamorphic ontogenesis of deep-sea spatangoids (Echinoidea, Spatangoida) of the NE Atlantic Ocean

Abstract. The early juvenile development of 3 species of irregular deep-sea echinoids of the NE Atlantic was examined using scanning electron microscopy. Although the post-metamorphic development of these 3 spatangoids is very similar, the morphology and development of fascioles (specialized bands of heavily ciliated minute spines) facilitates distinguishing the species. In Hemiaster expergitus and Spatangus raschi , the fascioles present in the early juvenile develop to form adult fascioles. In Brissopsis lyrifera , a juvenile fasciole of unknown function disappears during ontogenesis, and new adult subanal and periproct fascioles arise. Fascioles of S. raschi and B. lyrifera are present at a very early stage of development (∼0.7 mm test length), whereas in H. expergitus the fasciole appears much later (∼3 mm test length). Animals smaller than 0.8 mm test diameter have not yet developed a functional mouth and are still considered as endotrophic postlarval stages. Mouth development is similar for all spatangoids examined.     

Systematic assessment of the Atelostomata (Spatangoida and Holasteroida; irregular echinoids) based on spine microstructure

Spines of irregular echinoids occur in very high abundance in each specimen, and display distinct architecture as a result of the specialized functions of the spines; however, studies on spine microstructure in atelostomate echinoids have rarely been carried out. Accordingly, little is known about their specific morphology. This work aims to elaborate differences in the spine morphology of selected Atelostomata (Spatangoida and Holasteroida) in detail, and to discuss spine microstructure for its potential systematic value. Based on 82 atelostomate species (56 spatangoids and 26 holasteroids), we show that the perforation pattern in the internal cylinder of the spine (helicoidal versus horizontal pattern) provides a safe distinction between the Spatangoida and Holasteroida. According to this character we discuss the geological history of atelostomate echinoids, in particular their migration into the deep sea, based on well‐preserved records of fossil spines. © 2015 The Linnean Society of London     

Evolution to the extreme: origins of the highly modified apical system in pourtalesiid echinoids

The apical system of the genus Pourtalesia displays a plate architecture that falls so far outside that typical of other echinoids that plate homologies remain problematic. A new approach using the Extraxial–Axial Theory (EAT) that develops homologies for the Echinodermata is proposed. The exploration of apical plate patterns throughout ontogenetic sequences shows that the typical holasteroid pattern found in the youngest specimens undergoes a series of disturbances that result in a multiple disjunction accompanied by isolation or disappearance of certain genital plates. We propose a new interpretation of the apical architecture of the genus that agrees with: (1) the plate addition processes as predicted by the EAT; (2) patterns observed in other genera of the Pourtalesiidae as well as in its sister‐group (plexechinids); and (3) the patterns known from Palaeocene holasteroids. In the context of the EAT, the genus Pourtalesia appears to represent the extreme in a reduction of the extraxial part of the body wall. © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society, 2004, 140 , 137–155.     

A revision and phylogenetic analysis of Stapeliopsis (Apocynaceae)

A survey of morphological characters is carried out for Stapeliopsis . The information obtained from this is combined with molecular data from the plastid trn L-F DNA region and ITS1 of the nuclear encoded 18S−26S rRNA cistron, to obtain a hypothesis of the evolutionary relationships among the species. It is shown that Stapeliopsis is monophyletic in a combined molecular and morphological analysis. Stapeliopsis is sister to a clade containing Huernia , Orbea and Tromotriche . The species of Stapeliopsis group into two clades. One contains S. khamiesbergensis , S. neronis and S. urniflora , and this is highly supported. The remaining species fall into an unsupported clade in which S. exasperata is sister to the others. The genera Hermanschwartzia Plowes and Neopectinaria Plowes are rejected. It is shown that a synapomorphy for Stapeliopsis is the laterally flattened inner corona-lobes, which touch the anthers only at their bases. Eight species of Stapeliopsis are recognized, with no subgeneric divisions.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 125–155.     

The potential utility of postnatalskeletal developmental patterns in squamate phylogenetics

Postnatal patterns of skeletal development, includingthe sequence of appearance of ossification centres and the distributionof sesamoids, appear to be highly conserved species-level phenomenain squamates. As such, they are a potential source of charactersfor phylogenetic inquiry. These patterns, from 21 species representing14 crown squamate clades, form the basis for two analyses. In thefirst, the sequence of postnatal skeletal events is coded as charactersusing the sequence unit approach. This analysis reveals that thesequence of postnatal skeletal events might be useful for determiningrelationships at or above the level of crown clades, but not amongthem. The second analysis utilizes discrete data from postnatalskeletal development, such as the presence/absence of sesamoidsand the number of secondary centres in epiphyseal cartilages. Thesediscrete data appear capable of recovering the deeper divergenceswithin Squamata, but evolve too slowly to be informative at thelevel of crown clades. Thus, patterns of postnatal skeletal developmenthave the potential to help illuminate relationships throughout thesquamate tree. Further progress in this area will require the examinationof additional squamate species, the exploration of alternative codingschemes for developmental sequences, and comparable postnatal datafor Sphenodon .  © 2002 The Linnean Societyof London, Zoological Journal of the Linnean Society, 2002, 136 ,277−313.     

Phylogenetic taxonomy of the Cercosaurini (Squamata: Gymnophthalmidae), with new genera for species of Neusticurus and Proctoporus

The tribe Cercosaurini is one of the most poorly studied groups of the lizard family Gymnophthalmidae. Recent studies have suggested that two cercosauriine genera, Neusticurus and Proctoporus , are polyphyletic. The aim of the current study was to rectify the polyphyletic relationships and construct a phylogenetic taxonomy of the Cercosaurini that is congruent with evolutionary history. Neusticurus is divided into two genera, one of them new ( Potamites ), based on the clades recovered by molecular studies and previously discussed morphological data. Proctoporus is divided into three genera, one of which is new ( Petracola ), while an older name ( Riama ) is resurrected for another. All five genera are described and defined and taxonomic keys are presented. This study represents an important advance in rectifying the taxonomy of the Cercosaurini. Many other para- and polyphyletic genera remain in the Gymnophthalmidae and much future work on this group is warranted.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 143 , 405–416.     

Allopolyploid origin of Cardamine silana (Brassicaceae) from Calabria (southern Italy): karyological, morphological and molecular evidence

Endemic Cardamine silana from Calabria (southern Italy) previously reported to be related to C. raphanifolia was found to be hexaploid. Morphological characters and AFLP data were analysed to evaluate the degree of differentiation of C. silana from closely related taxa and to find parental taxa of this polyploid. Cardamine apennina from the C. pratensis group was examined as one putative parent, as indicated in previous studies of nuclear ITS sequences, along with other related taxa based on both cpDNA and ITS sequences. Both multivariate morphometric analyses of quantitative characters and evaluation of qualitative morphological characters showed: (1) closest position of C. silana to two diploids: C. acris from the Balkan Peninsula and C. apennina from Central Italy; (2) good extent of morphological separation of C. silana from related taxa; and (3) within C. acris subspecies, C. acris ssp. vardousiae from Central Greece as closest to C. silana . Neighbour-joining tree and PCoA ordinations of AFLP data, as well as patterns of AFLP bands sharing, corroborated results of multivariate morphometrics. This evidence supports an allopolyploid origin of C. silana , with C. apennina and C. acris as parental taxa. Its origin may be dated to Pleistocene glacial events, because of the presumably wider geographical distributions of its parental taxa during more humid periods at that time.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 101–116.     

Comparing entire colour patterns as birds see them

Colour patterns and their visual backgrounds consist of a mosaic of patches that vary in colour, brightness, size, shape and position. Most studies of crypsis, aposematism, sexual selection, or other forms of signalling concentrate on one or two patch classes (colours), either ignoring the rest of the colour pattern, or analysing the patches separately. We summarize methods of comparing colour patterns making use of known properties of bird eyes. The methods are easily modifiable for other animal visual systems. We present a new statistical method to compare entire colour patterns rather than comparing multiple pairs of patches. Unlike previous methods, the new method detects differences in the relationships among the colours, not just differences in colours. We present tests of the method's ability to detect a variety of kinds of differences between natural colour patterns and provide suggestions for analysis.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 86 , 405–431.     

A phylogenetic study of chthamaloids (Cirripedia; Thorcica; Chthamaloidae) based on 16S rDNA and COI sequence analysis

The sequences of gene fragments encoding cytochrome  c oxidase subunit I (COI) and 16S rDNA were obtained and used to construct phylograms of eight taxa of chthamaloid barnacles using the scalpelloid Calantica as an out-group. The phylograms support the basal position of Catomerus within the chthamaloids . Analysis of 16S rDNA shows that Octomeris and the four-plated barnacle Chamaesipho are located on the same clade, while Chthamalus , Euraphia and Tetrachthamalus are located on a second clade, indicating that reduction in the number of shell plates occurred twice in the evolution of the chthamaloids. The topology of phylograms based on COI sequences is poorly resolved: 93% of third position nucleotides in this fragment are polymorphic while the amino acid sequences are strictly conserved. We assume that in the chthamaloids, at least at the generic level, polymorphism in the COI gene is saturated beyond phylogenetic information and cannot resolve the phylogenetic relationships within this superfamily.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 39–45.     

Phylogeography and species limits in the Gymnodactylus darwinii complex (Gekkonidae, Squamata): genetic structure coincides with river systems in the Brazilian Atlantic Forest

Phylogenetic analyses based on mtDNA cytochrome  b were performed in 42 lizards of the Gymnodactylus darwinii complex from three regions within Brazil's Atlantic Forest. Mainland regions and continental shelf islands in the south-eastern range and mainland areas from the north-east were sampled. The criteria of maximum parsimony (MP), maximum likelihood (ML) and Bayesian methods were explored, with the robustness for nodes assessed by bootstrapping (MP and ML) and posterior probabilities (Bayesian searches). By all methods, three distinctive phylogroups were recovered: a south-eastern clade (SE) and two clades from northern regions (NE₁ and NE₂). The pattern of genetic structure of the major clades coincided with the presence of river systems in the Atlantic Forest, and based on corrected genetic distances between those clades, divergence times were tentatively estimated using mtDNA rates calibrated for squamate reptiles. The putative role of Atlantic Forest rivers in generating differentiation is discussed. We present a hypothesis of species limits for G. darwinii , based on concordant lines of evidence including cytogenetic and mtDNA analyses. Two chromosome races (cytotype A, 2n = 38; and cytotype B, 2n = 40) had distributions concordant with clades SE and NE₁ + NE₂, respectively. These races are interpreted to be full species on the basis of a number of empirical criteria.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 85 , 13–26.     

Geographical pattern of genetic variation in the Robertsonian system of Mus musculus domesticus in central Italy

The Robertsonian (Rb) system of Mus musculus domesticus in central Italy consists of three Rb races (CD, 2 n  = 22; CB, 2 n  = 22; ACR, 2 n  = 24), and additional Rb populations with new metacentrics have recently been reported. The aim of the present paper is to provide insight into the process of house mouse raciation in this area. Here we present new data concerning the geographical distribution of mtDNA haplotypes (control region sequence) in the three Rb races and in the surrounding standard populations. The presence of exclusive clades in all the three Rb races supports the idea of a past fragmentation event and a subsequent period of isolation. However, comparison of mtDNA polymorphism between Rb and standard races, and the shape of the mismatch distribution within the races, does not reveal any clear sign of a strong reduction in population size, at this geographical scale, related to race formation.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 84 , 395–405.     

Karyotype differentiation between Koelreuteria bipinnata and K. elegans ssp. formosana (Sapindaceae) based on chromosome banding patterns

Koelreuteria Laxm., a genus in the tribe Koelreuterieae (Sapindaceae), includes three tree species that are widely recognized as having horticultural merit. The two more closely related species, K. bipinnata Franch. and K. elegans (Seem.) A. C. Sm., are easily distinguished from K. paniculata Laxm. by their bipinnate leaves. In this study, both species were investigated cytogenetically and their karyotypes and heterochromatic patterns were compared. Koelreuteria bipinnata and K. elegans ssp. formosana (Hayata) F. G. Mey. both have 2 n  = 32 but their karyotypes present slight morphological differences when observed using conventional staining. Chromosome banding patterns are reported for the first time for this genus. Both species exhibit terminal heterochromatic blocks, as revealed by C-Giemsa and C-CMA₃, but the band size varies between the species. Koelreuteria bipinnata has larger heterochromatic blocks and more GC-rich segments, while in K. elegans ssp. formosana these bands are smaller. The relationship between the karyotype features in these closely related species is discussed.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 149 , 451–455.     

Karyomorphology, heterochromatin patterns and evolution in the genus Ophrys (Orchidaceae)

Karyotype structures and heterochromatin distribution in representative taxa of the genus Ophrys are compared, based on Feulgen-stained and banded somatic metaphase chromosomes. The karyotypes of Ophrys iricolor , O. lupercalis , O. caesiella , O. lutea , O. lunulata , O. x. tardans , O. apifera , O. praecox , O. lacaitae and O. insectifera are described for the first time. The karyological analyses indicate the relationships among the species with respect to asymmetry indices and heterochromatin content. Chromosomal differences have been helpful in clarifying the taxonomic position of Ophrys species that do not have clear affinities. The representative species of Araniferae , Fuciflorae and Ophrys sections exhibited the most asymmetrical karyotypes, while chromosome complements of the O. fusca–O. lutea group, of O. tenthredinifera and of O. bombyliflora proved to be less asymmetrical. Weakly heterochromatic chromosomes, with heterochromatin present mostly in thin centromeric bands, characterize Ophrys C-banded karyotypes. Chromomycin A₃ (CMA) staining revealed that the analysed species exhibit a weak pattern of CMA⁺ bands at centromeric, intercalary or telomeric regions. No DAPI bright blocks were observed. The significance of the karyological data is discussed with regard to the relationships between the analysed species. © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 87–99.     

Uncovering tropical diversity: six sympatric cryptic species of Blepharoneura (Diptera: Tephritidae) in flowers of Gurania spinulosa (Cucurbitaceae) in eastern Ecuador

Diversification of phytophagous insects is often associated with changes in the use of host taxa and host parts. We focus on a group of newly discovered Neotropical tephritids in the genus Blepharoneura , and report the discovery of an extraordinary number of sympatric, morphologically cryptic species, all feeding as larvae on calyces of flowers of a single functionally dioecious and highly sexually dimorphic host species ( Gurania spinulosa ) in eastern Ecuador. Molecular analyses of the mitochondrial cytochrome oxidase-I gene from flies reared from flowers of G. spinulosa reveal six distinct haplotype groups that differ by 7.2–10.1% bp (uncorrected pairwise distances; N  = 624 bp). Haplotype groups correspond to six distinct and well-supported clades. Members of five clades specialize on the calyces of flowers of a particular sex: three clades comprise male flower specialists; two clades comprise female flower specialists; the sixth clade comprises generalists reared from male and female flowers. The six clades occupy significantly different morphological spaces defined by wing pigmentation patterns; however, diagnostic morphological characters were not discovered. Behavioural observations suggest specific courtship behaviours may play a role in maintaining reproductive isolation among sympatric species. Journal compilation  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 779–797. No claim to original US government works.     

Falling apart and merging: diversification of slender salamanders (Plethodontidae: Batrachoseps) in the American West

The plethodontid genus Batrachoseps , the slender salamanders, is the most diverse clade of salamanders in western North America, but it has posed taxonomic difficulties because it contains many morphologically cryptic species. A segment of the mitochondrial DNA gene cytochrome b was studied for 278 individuals densely sampled from throughout the range of all 18 described species and several undescribed species. Phylogenetic analyses of the mtDNA data identify six major clades, one corresponding to the subgenus Plethopsis and five within a monophyletic subgenus Batrachoseps. All major clades and most species within these clades display strong phylogeographic structuring. Comparisons of mtDNA and allozyme data show that several allozymically cohesive groups are not monophyletic with respect to mtDNA. We suggest that this phenomenon results from fragmentation of populations, divergence in allopatry, and then recontact and gradual merging of units caused predominantly by male-mediated gene flow. The mtDNA offers evidence that populations were once more isolated than they are now, while the patterns of allozyme variation reflect recent and current interactions among populations. The complex patterns of morphological, allozymic and mtDNA variation associated with the constantly changing geological landscape give insight into the nature of processes responsible for species formation in Batrachoseps .  © 2002 The Linnean Society of London. Biological Journal of the Linnean Society , 2002, 76 , 361–391.     

Application of parsimony analysis of endemicity to Mexican gymnosperm distributions: grid-cells, biogeographical provinces and track analysis

Parsimony analysis of endemicity (PAE) was used to analyse the distributional patterns of 124 species of Mexican gymnosperms, using two different sample units: grid-cells and biogeographical provinces. PAE analyses were based on distributional data from herbarium specimens and specialized literature. Two data matrices were constructed for 60 grid-cells of 2° and 14 biogeographical provinces. The analysis of the 2° grid-cell matrix led to 7084 cladograms. The strict consensus cladogram showed several clades equivalent to the results obtained with the biogeographical provinces. Three clades agree with some principal regions of distribution of Mexican pines, previously identified by several authors, located at the northern portion of the Baja California peninsula, the Sierra Madre Occidental, and the Sierra Madre Oriental. These areas represent important centres of species diversity and endemism for Mexican gymnosperms. The analysis of the province matrix led to two most parsimonious cladograms, which only differed in the position of the Sierra Madre Occidental province. The iterative procedure PAE with progressive character elimination was applied to identify generalized tracks, where clades of provinces were considered equivalent to generalized tracks, and each time a cladogram was obtained, species defining its clades were deleted and a new run was undertaken. We found five generalized tracks, mainly located in montane provinces. The distribution patterns of gymnosperms agree with the existence of several Mexican biogeographical provinces, and a different historical biogeography of the Mexican peninsulas from the rest of the country is evident.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 92 , 405–417.     

Phylogeny of the Zoroasteridae (Zorocallina; Forcipulatida): evolutionary events in deep-sea Asteroidea displaying Palaeozoic features

The Zoroasteridae comprise a small but widespread family of asteroids distributed throughout the deep sea. Although poorly understood, they are often collected in the hundreds, suggesting that they occupy important ecological roles. A phylogenetic analysis including 24 terminal taxa and 70 morphological characters was performed, resulting in a single most-parsimonious tree. The tree separated zoroasterids with open, reticulate skeletons (e.g. Myxoderma ) as more basal than those with more heavily armored, imbricate skeletons (e.g. Zoroaster ), which were more derived. In addition to agreement with established genera, a new genus is supported by the phylogeny as the sister taxon to Myxoderma . The cladistic analysis was performed in conjunction with a revisionary survey of zoroasterid species, resulting in taxonomic changes to species in nearly every genus. Bathymetric and physiographic shifts were observed between the reticulate and imbricate zoroasterid clades. Zoroasterids possess a single marginal plate series, which occurs in basal sister-group neoasteroids (crown-group asteroids). Phylogenetic results suggest that the morphololgical resemblance between zoroasterids and Palaeozoic taxa, such as Calliasterella , is convergent but a paraphyletic Zoroasteride cannot be rejected and remains consistent with basal crown-group affinities. Although the phylogenetic position of the Eocene Zoroaster aff. fulgens was not strongly supported, its presence within a derived cluster of Zoroaster spp. suggests a relatively recent (i.e. Cenozoic) diversification into the deep sea. Taxonomic revisions, and geographical and bathymetric range extensions are also included.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 150 , 177–210.     

Tuberculation in spatangoid fascioles: Delineating plausible homologies

The existing definition of spatangoid fascioles as a narrow band of minute tubercles (miliaries) is inadequate. One reason is that many intermediates between the presence of indisputable fascioles and their total absence are known. Although fascioles are widely used in the classification of spatangoids, diversity of fasciole tuberculation has largely been ignored. We examine fascioles in about 100 spatangoid species, focusing on the earliest manifestations of fascioles (both developmentally and phylogenetically) and on their variable tuberculation. Qualitative observations are complemented by quantitative analyses (ANOVA and PCA) of 21 species. Three types of fascioles are defined according to tubercle pattern: protofascioles for localized concentrations of miliaries; parafascioles for bands of miliaries with a progressive transition to the surrounding tuberculation; orthofascioles for strongly differentiated, well-circumscribed bands of miliaries. Ontogenetic, architectural, ecological, and taxonomic variations of these three patterns are qualitatively and quantitatively investigated. We attempt to delineate plausible homologies, origins, and subsequent evolution of the different kinds of fascioles.     

A Late Jurassic salamander (Amphibia: Caudata) from the Morrison Formation of North America

Despite some remarkable recent discoveries, the Mesozoic fossil record of salamanders remains limited, particularly for the Jurassic. Here we describe the first articulated salamander skeleton from the Jurassic of Euramerica, recovered from Upper Jurassic deposits of the Morrison Formation, Dinosaur National Monument, USA. The specimen was studied using both conventional methods and high-resolution computed tomography. It shows a combination of primitive and derived character states that distinguish it from all known Mesozoic salamanders and which permit the erection of a new genus and species, Iridotriton hechti . The derived states (including the presence of spinal nerve foramina in the tail) suggest a position on the stem of the Salamandroidea. Together with microvertebrate material from Britain, Portugal, and North America, this specimen confirms the presence of both stem- and crown-group salamanders in Euramerica from the Middle Jurassic (Bathonian) onwards, paralleling their evolution in Central and eastern Asia. This, in turn, provides qualified support for the current vicariance model of salamander evolution whereby basal caudates on an undivided Laurasian plate became separated into two populations by the incursion of the Turgai Sea in the Middle Jurassic, yielding Cryptobranchoidea in Asia and Salamandroidea in Euramerica.  © 2005 The Linnean Society of London , Zoological Journal of the Linnean Society , 2005, 143 , 599−616.     

Phylogeography of the freshwater crayfish Cherax destructor Clark (Parastacidae) in inland Australia: historical fragmentation and recent range expansion

The yabby, Cherax destructor Clark, is the most widespread species in the most widespread genus of Australian freshwater crayfish. It has a distribution that spans several distinct drainage basins and biogeographical regions within semiarid and arid inland Australia. Here we report a study designed to investigate patterns of genetic variation within the species and hypotheses put forward to account for its extensive distribution using DNA sequences from the mitochondrial 16S rRNA gene region. Results of phylogenetic analyses contradicted previous allozyme data and revealed relatively deep phylogenetic structure in the form of three geographically correlated clades. The degree of genetic divergences between clades (8–15 bp) contrasted with the relatively limited haplotype diversity within clades (1–3 bp). Network-based analyses confirmed these results and revealed genetic structure on both larger and more restricted geographical scales. Nevertheless some haplotypes and 1-step clades had large distributions, some of which crossed boundaries between river basins and aquatic biogeographical regions. Thus both older and more recent historical processes, including fragmentation on a larger geographical scale and more recent range expansion on a local scale, appear to be responsible for the observed pattern of genetic variation within C. destructor . These results support elements of alternative hypotheses previously put forward to account for the evolutionary history of C. destructor and the origin of its large distribution.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 83 , 539–550.