象甲科昆虫转录组研究进展

转录组是细胞在特定发育阶段或生理条件下的全部转录本及其数量总和,并能揭示特定状态下的基因表达模式及分子机理。象甲科昆虫拥有动物界中最多的物种种类,该科许多昆虫也是我国粮食仓储和农林产业上的重大害虫。通过研究象甲科昆虫转录组,从分子水平揭示其生命过程中相关的基因及其功能,对寻找害虫防治的新方法具有重要意义。本文对象甲科昆虫转录组研究现状进行了浅析,涉及象甲科不同发育阶段基因差异、昆虫触角、与植物互作、防治、免疫机制、进化、基因沉默7个方面的分析,可在理论上丰富对象甲科昆虫遗传发育、免疫、潜在RNA干扰靶点筛选等方面的理解,并在此基础上提出了象甲科转录组今后的研究热点与应用前景,为害虫防控提供理论指导。     

Web-based analysis of the mouse transcriptome using Genevestigator

Background  

Gene function analysis often requires a complex and laborious sequence of laboratory and computer-based experiments. Choosing an effective experimental design generally results from hypotheses derived from prior knowledge or experimentation. Knowledge obtained from meta-analyzing compendia of expression data with annotation libraries can provide significant clues in understanding gene and network function, resulting in better hypotheses that can be tested in the laboratory.     

Comparative studies on biological activity of certain microtubule-interacting taxanes

We have compared the nature of interaction of certain taxanes with microtubular protein, and the mechanism of action underlying cytotoxic activity. Taxanes induced tubulin assembly in vitro, but only taxanes bearing side chain were capable of inducing the formation of stable tubulin polymers. Electron microscopy detections showed that taxane-induced polymers are structurally similar to microtubules formed by paclitaxel, with differences in length. Otherwise, light microscopy views have shown that intracellular microtubule network is deeply reorganized by taxanes into short fibers, unlike paclitaxel-bundled microtubules. Taxanes inhibited the growth of various human tumor cell lines, but cell cycle analysis did not always indicate a block in the G2/M phase. These agents alter some apoptotic signal transduction pathways, probably by a mechanism distinct from microtubule interaction. Briefly, the effectiveness of taxanes is closely related to their chemical structure, and depends on their interaction with microtubular protein. By virtue of this mechanism, some of these taxanes may provide usefulness for therapeutic improvements.     

Localization of a 210-kDa microtubule-interacting protein in the yeast Saccharomyces cerevisiae.

Using the monoclonal antibody MA-01, which recognizes a 210-kDa protein in cell-free extracts, spindle and cytoplasmic microtubules were visualized in budding yeast, Saccharomyces cerevisiae. In additional, a spot-like staining was found beneath the plasma membrane, revealing in part correlation with F-actin distribution. This pattern was common for cells of all cell-cycle stages. The interaction of the protein recognized by MA-01 with microtubules was confirmed in the double labeling with a polyclonal antitubulin antibody and by the sensitivity of intranuclear structures stained by MA-01 to the microtubule disrupting drug nocodazole.     

Concatenation cDNA sequencing for transcriptome analysis

We describe a high-throughput cDNA sequencing pipeline (http://www.hgsc.bcm.tmc.edu/projects/cdna) built in response to the emerging need for rapid sequencing of large cDNA collections. Using this strategy cDNA inserts are purified and joined through concatenation into large molecules. These 'pseudo-BACs' are subjected to random shotgun sequencing whereby the majority of cDNA inserts in the pool are sequenced. Using this concatenation cDNA sequencing platform, we have contributed more than 13000 full-length cDNA sequences from human and mouse to the Mammalian Gene Collection (MGC).