Milk-Clotting Enzymes From Microorganisms

A total of 230 cultures of fungi and 43 cultures of bacteria, isolated from such sources as soil, butter, and milk, were screened for their milk-clotting activity. The fungi were cultivated on semisolid media, and the bacteria were grown in milk media in shake culture. Phytic acid, added as calcium phytate, was found to stimulate production of the enzyme in most of the bacterial isolates. Proteolytic activity was invariably found to be associated with the milk-clotting enzyme in bacterial isolates. There was considerable variation in the ratio of the two enzymes from strain to strain.     

盐碱地土壤微生物对不同改良方法的响应

实验室条件下分别模拟客土改良、排水改良、生物(苜蓿)改良等3种常用的盐碱地改良方法,以菜园土壤和盐碱土(未改良的原始土)作为对照,研究了土壤微生物生态特征对不同改良方法的响应。结果显示:①土壤微生物区系及生理生化指标均对不同改良方式有良好的响应,其中土壤脲酶活性随土壤盐碱胁迫加剧而提高;②3种改良方式中,客土法在短期内最能改善土壤微生物各指标,依次是排水法、生物法;③排水法对土壤微生物生态状况不利;④生物法对于改善土壤微生物生态状况速度相对较慢,但因其克服了客土法、排水法显见的缺点,相对有更好的应用前景。     

Comparative Mesocosm Study of Biostimulation Efficiency in Two Different Oil-Amended Sub-Antarctic Soils

Biological treatment has become increasingly popular as a remediation method for soils and groundwater contaminated with petroleum hydrocarbon, chlorinated solvents, and pesticides. Bioremediation has been considered for application in cold regions such as Arctic and sub-Arctic climates and Antarctica. Studies to date suggest that indigenous microbes suitable for bioremediation exist in soils in these regions. This paper reports on two case studies at the sub-Antarctic Kerguelen Island in which indigenous bacteria were found that were capable of mineralizing petroleum hydrocarbons in soil contaminated with crude oil and diesel fuel. All results demonstrate a serious influence of the soil properties on the biostimulation efficiency. Both temperature elevation and fertilizer addition have a more significant impact on the microbial assemblages in the mineral soil than in the organic one. Analysis of the hydrocarbons remaining at the end of the experiments confirmed the bacterial observations. Optimum temperature seems to be around 10 degrees C in organic soil, whereas it was higher in mineral soil. The benefit of adding nutrients was much stronger in mineral than in the organic soil. Overall, this study suggests that biostimulation treatments were driven by soil properties and that ex situ bioremediation for treatment of cold contaminated soils will allow greater control over soil temperature, a limiting factor in cold climates.     

Photoresponses of Halobacterium salinarum to repetitive pulse stimuli.

Halobacterium salinarum cells from 3-day-old cultures have been stimulated with different patterns of repetitive pulse stimuli. A short train of 0.6-s orange light pulses with a 4-s period resulted in reversal peaks of increasing intensity. The reverse occurred when blue light pulses were delivered as a finite train: with a 3-s period, the response declined in sequence from the first to the last pulse. To evaluate the response of the system under steady-state conditions of stimulation, continuous trains of pulses were also applied; whereas blue light always produced a sharply peaked response immediately after each pulse, orange pulses resulted in a declining peak of reversals that lasted until the subsequent pulse. An attempt to account for these results in terms of current excitation/adaptation models shows that additional mechanisms appear to be at work in this transduction chain.     

Photoresponses of the copepod Mesocyclops edax

The predatory copepod Mesocyclops edax is an important componentof many zooplankton communities where it typically makes extensivedid vertical migrations. To describe the effect of light onadults we measured their photoresponses in the laboratory. Theresponse spectrum is characterized by a wide plateau of greatestsensitivity from about 480 – 580 nm. These animals areadapted to perceive light during the day since their regionof maximum sensitivity overlaps the spectral region of highestquantal intensity underwater (575 – 700 nm). The thresholdintensity for positive phototaxis by dark adapted animals wasabout 5 x 10^–1 Wm^–2 at 540 nm, and they were positivelyphototactic up to an intensity of 5 x 10^–1 Wm^–2.Above this intensity phototaxis is no longer observed. Light-adaptedanimals were less sensitive than dark-adapted, but their generalpattern of response to light intensity did not differ. Thereis no rhythm in phototaxis. Their photoresponses may providea mechanism for controlling vertical migration so as to minimizeexposure to planktivorous fish. ¹Contribution No. 1375-AEL from UM-CEES, Appalachian EnvironmentalLaboratory.     

Photoresponses of Chaoborus larvae

The diel vertical migration of Chaoborus larvae is a well known phenomenon. In order to quantify the ability of larvae to utilize underwater light cues in their migration, we measured photoresponses of fourth-instar Chaoborus punctipennis larvae in the laboratory. The action spectrum for these larvae was characterized by a maximum in sensitivity at 400 nm, a plateau at a lower sensitivity from 480 to 560 nm, and a region of much lower sensitivity at wavelengths longer than 620 nm. Dark-adapted larvae exhibited a positive phototaxis at low light intensity which shifted to a negative phototaxix as light intensity increased. At 540 nm the threshold intensity was 1.5 × 10^?9 W/m² for positive phototaxis and about 10^?6 W/m² for negative phototaxis. Light adaptation decreased sensitivity and altered the phototactic pattern. Larvae have a clear circadian rhythm in negative phototaxis, in which greatest responsiveness occurs early in the day. We suggest that the rhythm in photoresponsiveness primarily controls the timing of the downward migration at dawn.     

Photoresponses of wild-type and mutant dikaryons ofChlamydomonas

Photoaccumulation and random motility of wild-type and mutant gametes and dikaryons ofChlamydomonas reinhardtii were evaluated with quantitative assays and compared with those of vegetative cells. Gametes exhibited behavior similar to that of vegetative cells. Dikaryons constructed from (+) and (−) wild-type gametes exhibited strong photoaccumulation in the presence of a stimulus and normal random swimming in red light, which shows that the activity of flagella and other components from two cells can be integrated and coordinated to permit appropriate behavior. Dikaryons from crosses of the wild type with mutants exhibited intermediate photoaccumulation. suggesting that neither phenotype is dominant. In contrast, crosses between an abnormally swimming mutant and normally motile strains showed that wild-type swimming was dominant. Partial complementation of mutant photoresponse phenotypes occurred in some crosses, but recovery of fully normal behavior was not observed.     

Different Photoresponses of Staphylococcus aureus and Pseudomonas aeruginosa to 514, 532, and 633 nm Low Level Lasers In Vitro

Analysis of virulence mechanisms of plant pathogens is often limited by the lack of genetic tools that can be used to identify genes that are preferentially expressed during their interactions with plants. In the present study, we used the newly constructed IVET (in vivo expression technique) plasmid pIviGK and the corresponding antibiotic resistance–based selection method to identify genes that encode pathogenicity factors of the soft rot-causing bacterium Pseudomonas viridiflava. These included pel, the gene encoding pectate lyase, which is responsible for the development of soft rot symptoms. We have also isolated and characterized the gene mviN_pv encoding a putative novel membrane associated virulence factor of P. viridiflava. A mutation in mviN_pv was shown to influence motility as well as virulence of P. viridiflava. The mviN_pv gene is expressed to a moderate level in LB media and its expression increases under inducing conditions as was shown by measuring in planta expression dynamics of the fused gfp reporter gene.     

Photoresponses in Rhodobacter sphaeroides: role of photosynthetic electron transport.

Rhodobacter sphaeroides responds to a decrease in light intensity by a transient stop followed by adaptation. There is no measurable response to increases in light intensity. We confirmed that photosynthetic electron transport is essential for a photoresponse, as (i) inhibitors of photosynthetic electron transport inhibit photoresponses, (ii) electron transport to oxidases in the presence of oxygen reduces the photoresponse, and (iii) the magnitude of the response is dependent on the photopigment content of the cells. The photoresponses of cells grown in high light, which have lower concentrations of light-harvesting photopigment and reaction centers, saturated at much higher light intensities than the photoresponses of cells grown in low light, which have high concentrations of light-harvesting pigments and reaction centers. We examined whether the primary sensory signal from the photosynthetic electron transport chain was a change in the electrochemical proton gradient or a change in the rate of electron transport itself (probably reflecting redox sensing). R. sphaeroides showed no response to the addition of the proton ionophore carbonyl cyanide 4-trifluoromethoxyphenylhydrazone, which decreased the electrochemical proton gradient, although a behavioral response was seen to a reduction in light intensity that caused an equivalent reduction in proton gradient. These results strongly suggest that (i) the photosynthetic apparatus is the primary photoreceptor, (ii) the primary signal is generated by a change in the rate of electron transport, (iii) the change in the electrochemical proton gradient is not the primary photosensory signal, and (iv) stimuli affecting electron transport rates integrate via the electron transport chain.     

Antibacterial Effects of Water-Soluble Low-Molecular-Weight Chitosans on Different Microorganisms

Low-molecular-weight chitosans with a viscosity-average molecular weight (M) of 5 to 27 kDa and an equal degree of deacetylation (DD, 85%) were highly active against Pseudomonas aureofaciens, Enterobacter agglomerans, Bacillus subtilis, and Bifidobacterium bifidum791, causing death in 80 to 100% of cells. An exception to this tendency was Escherichia coli, for which the rate of cell death induced by the 5-kDa chitosan, was 38%. The antibacterial effect was manifested as early as 10 min after the incubation of 12-kDa chitosan with B. subtilis or E. coli cells. Candida krusei was almost insensitive to the above crab chitosans. However, Candida krusei was highly sensitive to chitosans with M 5, 6, 12, 15.7, and 27 kDa: the minimum inhibitory concentration (MIC) varied from 0.06 to 0.005%. Chitosans with M 5, 12, and 15.7 kDa exerted an antibacterial effect on Staphylococcus aureus. Chitosans with M 5, 15.7, and 27 kDa had no effect on Bifidobacterium bifidum ATCC 14893. The antibacterial effect of the 4-kDa chitosan on E. coli and B. bifidum 791 increased with DD in the range 55–85%.     

Photoresponses of second-instar Chaoborus larvae

The diel vertical migration of Chaoborus larvae varies with larval instar. Although light is involved in the control of vertical migration the contribution of larval photoresponses is unknown. In order to describe ontogenetic changes in larval photoresponses we measured photoresponses of second-instar Chaoborus punctipennis larvae in the laboratory. The response spectrum of these larvae had peaks in sensitivity at 420 and 620 nm with a wide plateau of lower sensitivity from 460 to 600 and 640 to 680 nm. Dark adapted larvae were positively phototactic at intensities from 10^?7 to 10¹ Wm^?2 at 420 nm. The level of response decreased somewhat above 10^?4 Wm^?2, and above 10^?2 Wm^?2 a small proportion of larvae shifted to a negative phototaxis. At 420 nm the threshold intensity was about 10^?7 Wm^?2 for positive phototaxis and 10^?2 Wm^?2 for negative phototaxis. Light adaptation increased the threshold intensity for positive phototaxis. The differences in larval photoresponses between second- and fourth-instar larvae suggests that the young instars are adapted to the photoenvironment of the water column and older larvae are adapted to avoid the water column except at very low light intensities. These predictions match the diel distribution of these larvae.     

Flagellar Photoresponses of Chlamydomonas Cells Held on Micropipettes: III. Shock Response

Using high-speed microcinematography flagellar shock responses of a great number of Chlamydomonas cells, free-swimming as well as immobilized on micropipettes, were investigated in this study. Responses were elicited by flashes, by blue, red or white light steps or occurred “spontaneously”. A large variety of shock responses has been found, in part due to various kinds of flagellar deactivations. Typical courses of flagellar responses are described in detail. The major part of the analyzed responses consists of a transition back from undulatory beats, characteristic for shock responses, to the normal breaststroke beats, probably as a result of a decreasing Ca⁺⁺ concentration at the axoneme. It is known that undulatory beats are triggered by a transient strong influx of Ca⁺⁺ ions into the flagella. Responses are initiated simultaneously in the two flagella but are finished independently. Differences in cis (= next to the stigma) and trans (= far from it) flagella were observed but were not consistent. The origin of the deactivations during the shock responses is discussed, as well as an involvement of basal body-associated structures in flagellar beating and in the change between the two beating modes. The comparison of the two fundamentally different types of beating and a close study of transitional beats may convey insight into the complexity of flagellar beating in Chlamydomonas.     

Photoresponses of Matteuccia struthiopteris (L. ) Todaro

The germination of Malleucciu struthiopteris spores is lightdependent. All wavelengths between 400 and 750 nm promote germination,but two major peaks of promotion occur at 550 and 625 nm, anda minor peak of 450nm. A small number of spores germinato whom incubated in the darkwith IAA, kinetin, or gibberollie acid, but they do not undergofurther development. In red or white light no promotion of germinationover the control level is induced by the growth substances,only an inhibition at the higher concentrations.     

Siderophore Production by Microorganisms Isolated From a Podzol Soil Profile

Siderophore-producing bacteria/actinobacteria and fungi were isolated from O- (organic), E- (eluvial), B- (upper illuvial), and C- (parent material) horizons of podzol soil. Siderophores were isolated and hydroxamate type siderophores were detected and quantitated by high-performance liquid chromatography coupled to electrospray ionization mass spectrometry. The molecular identification of siderophore-producing isolates showed that there was a high diversity of fungal and bacterial/actinobacterial species throughout the soil profile. The isolated bacteria/actinobacteria showed different abilities in the production of ferrioxamines (E, B, G and D). Moreover, the isolated fungal species showed great variety in the production of ferrichromes, coprogens and fusarinines.     

Transretinal ERG Recordings from Mouse Retina: Rod and Cone Photoresponses

There are two distinct classes of image-forming photoreceptors in the vertebrate retina: rods and cones. Rods are able to detect single photons of light whereas cones operate continuously under rapidly changing bright light conditions. Absorption of light by rod- and cone-specific visual pigments in the outer segments of photoreceptors triggers a phototransduction cascade that eventually leads to closure of cyclic nucleotide-gated channels on the plasma membrane and cell hyperpolarization. This light-induced change in membrane current and potential can be registered as a photoresponse, by either classical suction electrode recording technique^1,2 or by transretinal electroretinogram recordings (ERG) from isolated retinas with pharmacologically blocked postsynaptic response components^3-5. The latter method allows drug-accessible long-lasting recordings from mouse photoreceptors and is particularly useful for obtaining stable photoresponses from the scarce and fragile mouse cones. In the case of cones, such experiments can be performed both in dark-adapted conditions and following intense illumination that bleaches essentially all visual pigment, to monitor the process of cone photosensitivity recovery during dark adaptation^6,7. In this video, we will show how to perform rod- and M/L-cone-driven transretinal recordings from dark-adapted mouse retina. Rod recordings will be carried out using retina of wild type (C57Bl/6) mice. For simplicity, cone recordings will be obtained from genetically modified rod transducin α-subunit knockout (Tα^-/-) mice which lack rod signaling⁸.     

Kinetic Modeling and Error Analysis for Decontamination of Different Petroleum Hydrocarbon Components in Biostimulation of Oily Soil Microcosm

A microcosm study was constructed to investigate the effect of complex co-substrate (corn steep liquor, CSL) addition on indigenous bacterial community, rate and extent of petroleum hydrocarbons (PH) degradation in an oily soil with total petroleum hydrocarbons (TPH) content of 63353 mg kg^?1. TPH degradation was found to be characterized by a rapid phase of degradation during the first three weeks where 76% removal of TPH occurred, followed by a slower degradation phase, where further 7% of the initial TPH was removed by the end of incubation period, 35 d. Branched alkanes are more resistant to microbial degradation than n-alkanes. Furthermore, the unresolved complex mixtures (UCM) of hydrocarbons are less degradable than n- and iso-alkanes. Pristane (Pr) was the most recalcitrant aliphatic compound studied in this work. These results in addition to the extensive bacterial growth observed (from 10⁷ to 10¹⁰ CFU g^?1 soil) give strong support that the addition of CSL resulted in increased degradation rates. The indigenous bacteria grew exponentially during the incubation period of 35 d with a growth rate of 0.26 d^?1. Kinetic modeling was performed to estimate the rates of biodegradation of each hydrocarbon type component in the studied system. Five different error functions were used in this study to evaluate the fitness of the model equation to the obtained experimental data. This showed that the degradation of ∑nC₂₀-nC_24, ∑nC₃₅-nC₄₂ and nC₁₈ can be better represented by a second order model, whereas the TPH, total resolvable peaks (TRP), nC₁₇, UCM, ∑nC₁₀-nC₁₄, ∑nC₁₅-nC_19, ∑nC₂₅-nC₂₉, ∑nC₃₀-nC_34, ∑nC_n, and ∑isoC_n and isoprenoids Pr and phytane (Ph) were similarly following the first order model.