Evidence for the Addition of the Superoxide Anion to the Anti-Oxidant n-Propyl Gallate in Aqueous Solution

n-Propyl gallate reacts with the superoxide radical anion in aqueous solution (k = 5.1 × 10⁵ mol^-1 dm³s^-1). The spectrum of the transient species so formed has been measured (absorbance maximum at 550nm, ε = 1360mol^-1dm³cm^-1). Electron or H atom transfer processes as well as proton abstraction have been excluded as possible mechanisms, and it is proposed that an addition reaction takes place.     

Evidence for the Addition of the Superoxide Anion to the Anti-Oxidant n-Propyl Gallate in Aqueous Solution

n-Propyl gallate reacts with the superoxide radical anion in aqueous solution (k = 5.1 × 10⁵ mol^?1 dm³s^?1). The spectrum of the transient species so formed has been measured (absorbance maximum at 550nm, ? = 1360mol^?1dm³cm^?1). Electron or H atom transfer processes as well as proton abstraction have been excluded as possible mechanisms, and it is proposed that an addition reaction takes place.     

Entropy Change for Free Polypeptide Chain upon Hydrogen Bonding

Formation probabilities of different hydrogen bonds between carbonyl oxygen and amide hydrogen were determined by Monte Carlo simulations using a computer model in the space of sterically allowable conformations of alanine and glycine oligopeptides, and the corresponding entropy losses for the peptide backbone, TS, were calculated. The model was studied at different criteria of steric interactions. Comparison with the data of other authors showed the values of TSto be mainly determined by overall extent and type of the state space and to be only slightly dependent on its energy profile. Both short-range and long-range steric interactions were shown to prevent hydrogen bonding, especially in alanine peptides. In the model studied, the initiation of (R)-helices is associated with TS= 8–10 kT, and prior formation of a 3/10-turn or one three-center H-bond does not appreciably decrease this entropy barrier. Elongation of the (R)-helix by one residue leads to TS= 3.0–3.7 kT, the helices begin to stabilize after at least three sequential H-bonds are formed. The difference in the probability of insertion of Ala and Gly into the helix is lower than it follows from comparison of their mobility. The results could be explained assuming that factors different from helical H-bonds take part in the stabilization of the helices. One may suppose upon modeling of folding that even three sequential H-bonds are unable to fix the structure of a flexible peptide loop, while the elongation of (R)-helices in the supersecondary helix-loop-helix structure is favorable as long as the loop conformation remains nearly optimal.     

Carbon-Oxygen Hydrogen Bonding in Biological Structure and Function

Carbon-oxygen (CH···O) hydrogen bonding represents an unusual category of molecular interactions first documented in biological structures over 4 decades ago. Although CH···O hydrogen bonding has remained generally underappreciated in the biochemical literature, studies over the last 15 years have begun to yield direct evidence of these interactions in biological systems. In this minireview, we provide a historical context of biological CH···O hydrogen bonding and summarize some major advancements from experimental studies over the past several years that have elucidated the importance, prevalence, and functions of these interactions. In particular, we examine the impact of CH···O bonds on protein and nucleic acid structure, molecular recognition, and enzyme catalysis and conclude by exploring overarching themes and unresolved questions regarding unconventional interactions in biomolecular structure.     

Optical Properties of DNA in Aqueous Solution

In the study of DNA electric birefringence, it is usual to use theories that consider that molecules in solution are small in relation to the light wavelength. In this work, we study the DNA electric birefringence using a broken-rod macroion (BRM) model composed of two cylindrical arms which does not restrict the size of the molecules. To achieve this, we include the inhomogeneity effect of the light electric field through the molecule and the interaction between its different parts. To analyze the interaction between a molecule and the incident beam of light, we apply the discrete dipole approximation (DDA), according to which each molecule is described as a finite array of electronic coupled oscillators. The electric birefringence is calculated from the oscillator polarizability. This is obtained from experimental data of electric birefringence saturation and from the increment of the solution refraction index in relation to that of the solvent. Furthermore, the oscillator polarizability is also estimated from DNA absorption spectrum using the Kronig–Kramers relations. This allows us to analyze the contributions of the different absorption bands of DNA to the electric birefringence. We analyze the influence of the inhomogeneity of the light electric field and of the intramolecular interactions in the characterization of DNA optical properties using electric birefringence measurements.     

Decomposition of Allyl Isothiocyanate in Aqueous Solution

Allyl isothiocyanate was gradually decomposed in aqueous solution to produce a garlic like odor. The decomposition of this isothiocyanate was not based on hydrolysis of R-NCS as in the case of p-hydroxybenzyl isothiocyanate, but the addition reaction on –N=C=S. Four substances formed with the decomposition of the isothiocyanate were isolated, and their chemical constitutions were clarified. Allyl isothiocyanate was decomposed to allyl allyldithiocarbamate (III), which was degradated to diallyl tetra- and penta-sulfide (II), and this poly-sulfide was further degradated to paraffin like hydrocarbon (I) and sulfur. Moreover, N,N′-diallylthiourea (IV) was produced by the addition reaction of allylamine, formed from the isothiocyanate by action of water, to residual isothiocyanate.     

Chlorazol Black E in Aqueous Alkaline Solution

Chlorazol black E has a greater solubility in alkaline than in neutral aqueous solution. A method of preparing an alkaline solution (a 1% aqueous solution, heated 5 minutes at 70° C. with 0.2% concentrated ammonia water) for general tissue staining is described, together with notes on its use. The solution was unsatisfactory as a negative stain for bacteria.     

Fluorescence Detection of Carbon-Centered Radicals in Aqueous Solution

A simple, highly sensitive method for the simultaneous determination of arrays of carbon-centered radicals in aqueous systems is described. Radicals are efficiently trapped by an amino-nitroxide to form stable products which are then reacted with fluorescamine to produce highly fluorescent adducts. The adducts are easily separated by reversed-phase high performance liquid chromatography. The detection limit for individual radical adducts (0.5 to 2nM) is two to three orders of magnitude lower than those of current methods employing electron paramagnetic resonance detection. Results on the photolysis of ketones and z-keto acids demonstrate the potential of this technique. This approach should be widely applicable to the study of radical processes in biological and chemical systems.     

Fluorescence Detection of Carbon-Centered Radicals in Aqueous Solution

A simple, highly sensitive method for the simultaneous determination of arrays of carbon-centered radicals in aqueous systems is described. Radicals are efficiently trapped by an amino-nitroxide to form stable products which are then reacted with fluorescamine to produce highly fluorescent adducts. The adducts are easily separated by reversed-phase high performance liquid chromatography. The detection limit for individual radical adducts (0.5 to 2nM) is two to three orders of magnitude lower than those of current methods employing electron paramagnetic resonance detection. Results on the photolysis of ketones and z-keto acids demonstrate the potential of this technique. This approach should be widely applicable to the study of radical processes in biological and chemical systems.     

Hexagonal Substructure and Hydrogen Bonding in Liquid-Ordered Phases Containing Palmitoyl Sphingomyelin

All-atom simulation data are presented for ternary mixtures of palmitoyl sphingomyelin (PSM), cholesterol, and either palmitoyl oleoyl phosphatidyl choline or dioleoyl phosphatidyl choline (DOPC). For comparison, data for a mixture of dipalmitoyl phosphatidyl choline (DPPC), cholesterol, and DOPC are also presented. Compositions corresponding to the liquid-ordered phase, the liquid-disordered phase, and coexistence of the two phases are simulated for each mixture. Within the liquid-ordered phase, cholesterol is preferentially solvated by DOPC if it is available, but if DOPC is replaced by POPC, cholesterol is preferentially solvated by PSM. In the DPPC mixtures, cholesterol interacts preferentially with the saturated chains via its smooth face, whereas in the PSM mixtures, cholesterol interacts preferentially with PSM via its rough face. Interactions between cholesterol and PSM have a very particular character: hydrogen bonding between cholesterol and the amide of PSM rotates the tilt of the amide plane, which primes it for more robust hydrogen bonding with other PSM. Cholesterol-PSM hydrogen bonding also locally modifies the hexagonal packing of hydrocarbon chains in the liquid-ordered phase of PSM mixtures.     

Fiber-based Surface Plasmon Resonance Sensor for Lead Ion Detection in Aqueous Solution

Plasmonics - Maghemite/reduced graphene oxide nanocomposite has been successfully deposited onto the surface of a gold-coated D-shaped optical fiber. The synergetic combination of gold, graphene,...     

水相中氢气浓度检测方法的建立

近年来,研究表明氢分子具有广泛的生物学效应,饮用富氢水（hydrogen-rich water,HRW）是其主要的摄取方法,但目前对于水相中氢气浓度检测方法的研究甚少。为了建立适用于测定水相中氢气浓度的检测方法,利用纯水氢气发生器制备饱和富氢水。然后,利用氢气微电极直接测定水相中的氢气浓度,结果表明,在不同氢气浓度范围内（0～1.620 0 mg·L-1和0～0.202 5 mg·L-1）,氢气浓度与微电极信号值均呈现良好的线性关系,方法检出限（method detection limit,MDL）为4.3×10-3 mg·L-1。同时,采用顶空方式将水相中的氢气转移到气相中,通过气相色谱法测定氢气的浓度,结果表明,在不同氢气浓度范围内（0～1.620 0 mg·L-1和0～0.202 5 mg·L-1）,氢气浓度与气相色谱峰面积均具有良好的线性关系,MDL为8.7×10-4 mg·L-1。研究结果表明,氢微电极法和气相色谱法均可用于水相中氢气浓度的精确定量,即成功建立了采用氢气微电极及顶空气相色谱测定水相中氢气含量的检测方法。     

Studies on Radiation Chemistry of Halogenophenols in Aqueous Solution

In relation to the bactericidal action of γ-irradiated halogenophenol solution, radiolysis of p-bromophenol in the aqueous system under anaerobic condition was investigated. Several phenolic compounds could be isolated from the radiolysis products, and three of them were elucidated for their structures. One of them was hydroquinone and the other two were assigned as new asymmetrical dimers, 5-bromo-2,4′-dihydroxybiphenyl and 2-bromo-5,4′-dihydroxybiphenyl, which were confirmed by the syntheses of their methyl ethers.