The mechanism of sugar-dependent repression of synthesis of catabolic enzymes in escherichia coli

Previous studies have indicated that the Escherichia coli adenylate cyclase (AC) activity is controlled by an interaction with the phosphoenolpyruvate (PEP): sugar phosphotransferase system (PTS). A model for the regulation of AC involving the phosphorylation state of the PTS is described. Kinetic studies support the concept that the velocity of AC is determined by the opposing contributions of PEP-dependent phosphorylation (V₁) and sugar-dependent dephosphorylation (V₂) of the PTS proteins according to the expression % V_AC = 100/[1 + (Max V₂/Max V₁)]. Physiological parameters influencing the rate of the PTS are discussed in the framework of their effects on cAMP metabolism. Factors that increase cellular concentration of PEP (and stimulate V₁) appear to enhance AC activity while increases in extracellular sugar concentration (which stimulate V₂) or internal levels of pyruvate (which inhibit V₁) inhibit the activity of this enzyme.     

Generation of α-amylase in germinating Hordeum distichon

The scutellar tissue of germinating barley synthesises significant amounts of a-amylase. The endogenous level of sugars probably limits the initial formation of α-amylase mainly by repressing the supply of gibberellins to the aleurone layer.     

Catabolite repression in Enterococcus faecalis

Metabolism of citrate, pyruvate and sugars by Enterococcus faecalis E-239 and JH2-2 and an isogenic, catabolite derepressed mutant of JH2-2, strain CL4, was investigated. The growth rates of E. faecalis E-239 on citrate and pyruvate were 0.58 and 0.63 h(-1), respectively, indicating that both acids were used as energy sources. Fructose and glucose prevented the metabolism of citrate until all the glucose or fructose had been metabolised. Diauxie growth was not observed but growth on glucose and fructose was much faster than on citrate. In contrast, citrate was co-metabolized with galactose or sucrose and pyruvate with glucose. When glucose was added to cells growing on citrate, glucose metabolism began immediately but inhibition of citrate utilisation did not begin for approximately 1.5 h. Growth rates of E. faecalis JH2-2 and its isogenic, catabolite derepressed mutant, strain CL4, on citrate, were 0.41 and 0.36 h(-1), respectively. The catabolite derepressed mutant was able to co-metabolise citrate and glucose at all concentrations of glucose tested (3-25 mM), while its parent, could only metabolise citrate once all the glucose had been consumed. In strains JH2-2 and E-239, the growth rate on citrate decreased as the glucose concentration increased and, in 25 mM glucose, consumption of citrate was inhibited for several hours after glucose had been consumed. These results indicate that catabolite repression by glucose and fructose occurs in enterococci.     

Continuous-flow determination of an alpha-amylase inactivator in fermentation samples using a ferricyanide reagent

A continuous-flow system has been developed in which pancreatic alpha-amylase is incubated with soluble starch at 37 degrees C. Reducing sugars being delivered at the "steady-state" hydrolysis of starch are dialyzed into a solution of alkaline ferricyanide. Ferricyanide is then reduced at 95 degrees C. The decrease in the absorbance of ferricyanide solution is recorded as "enzyme baseline." When samples containing alpha-amylase inactivator are introduced into the system, hydrolysis of starch is reduced according to the concentration of enzyme inactivator. The amount of inactivator in the samples is deduced from a standard curve of six standard concentrations using the Technicon Autoanalyzer II system manager in connection with a calculator for automated interpolation. This method allows to determine 40 samples/h with high sensitivity and precision (mean = 1.53 mg/liter; C.V. = 1.4%).     

The effect of field margins on the yield of sugar beet and cereal crops

The effect of field margins on the yield of sugar beet, wheat and barley was studied on commercial farms and in a series of field experiments from 1992–1997. There was always a trend of increasing yield from the edge of the field to the centre, with a marked reduction around the ‘tramlines’ and the area where machinery turns. In the studies on commercial farms, headland yield loss varied widely. In sugar beet the headlands yielded 19–41% less than the centre, with a mean reduction of 26%. In cereals the range was 3–19%, with a mean loss of 7%. Headland yield reductions were generally smaller in the field experiments than those found on commercial farms. These headland effects did not move towards the centre of the field when grass margins were planted at the edge of the field; there was no significant effect on the yield of the adjacent crop. The presence of boundary trees had the greatest effect on yield: in the outer 9 m of the field, the area shaded by trees produced 4.4 t ha^-1 of wheat, and the area that was not shaded 8.1 t ha^-1. Turning of machinery also significantly reduced yield, while grazing by rabbits and hares surprisingly had no effect. Following the reform of the Common Agricultural Policy in 1992, the main effect of which was to change from a price support policy to direct payments to producers, farmers in the European Union who produce more than a specified tonnage of ‘eligible crops’ per year, are required to fallow a given percentage of their land (currently 5%), to qualify for Arable Area Payments. Growers can elect to fallow fields on a rotational basis, or permanently. Headland set-aside is a term used to describe strips of set-aside, a minimum of 20 m wide around the edges of fields. In these experiments, the headland effect did not extend beyond 20 m from the field edge. Therefore, particularly in fields with boundary hedges or trees, headland set-aside could effectively remove the poor-yielding area at the field margin.     

巨大芽孢杆菌β-淀粉酶在枯草芽孢杆菌中诱导表达及碳代谢去阻遏

【背景】β-淀粉酶在食品和医疗领域应用广泛。目前工业上使用的β-淀粉酶主要从植物中提取,生产成本高,限制了β-淀粉酶的应用。微生物生产的β-淀粉酶尽管早有报道,但由于产酶水平低下,因而一直未能实现工业化。【目的】实现巨大芽孢杆菌β-淀粉酶在枯草芽孢杆菌中的高效诱导表达,缓解碳分解代谢物阻遏(Carbon catabolite repression,CCR)对该重组酶表达的影响,并研究其酶学性质。【方法】克隆枯草芽孢杆菌木糖诱导启动子,构建木糖诱导表达载体以介导巨大芽孢杆菌1514的β-淀粉酶编码基因amyM在枯草芽孢杆菌中的异源表达。定点突变位于amyM信号肽编码区的分解代谢物响应元件(Catabolite responsive element,CRE),降低碳源代谢对重组β-淀粉酶施加的阻遏。【结果】构建了诱导表达β-淀粉酶基因的重组枯草芽孢杆菌菌株。同义替换amyM-CRE保守碱基在不同程度上缓解了碳源所施加的CCR效应,重组酶的表达水平得到显著提高。重组酶的分子量为57 kD,水解可溶性淀粉主要生成麦芽糖和少量葡萄糖,其中麦芽糖含量为72%。该酶最适作用温度为50°C,最适反应pH为6.0。Co2+、Ca2+对重组β-淀粉酶具有激活作用。【结论】通过木糖诱导表达系统和碳代谢去阻遏实现了β-淀粉酶在枯草芽孢杆菌中的高效表达,酶活最高可达97.16 U/mL发酵液,比amyM基因来源菌巨大芽孢杆菌1514的β-淀粉酶产量提高了440倍,为β-淀粉酶发酵生产的工业化提供了支撑。     

Effect of Zn2+ on plant α-amylases in vitro

A detailed study of the in vitro interaction between Zn²⁺ and α-amylases from different origins has shown that under physiological conditions     

Externally applied gibberellic acid and α-amylase formation in grains of barley (Hordeum distichon)

During germination the aleurone layer of barley grains becomes progressively less able to form more α-amylase in response to a dose of gibberellic acid (GA₃). This decline appears to be linked to the presence of a growing embryo. In whole grains the embryo ‘modulates’ the response (α-amylase formation) to controlled external applications of GA₃ in a dose-dependent manner. Sugars, and some other metabolites, repress α-amylase formation in transected grains, apparently by reducing levels of endogenously produced gibberellins. This effect is partly, but not completely, reversed by additions of GA₃. External applications of GA₃ augment the levels of several gibberellin fractions within the grain. The nature of the gibberellin material remaining on the surface of the grains alters with time. Grains treated with GA₃ contain a conjugate of low biological activity, possibly a glycoside, that is hydrolysed by a mixed glycosidase preparation to release a biologically-active gibberell in resembling GA₃.     

Structural and mutational analyses of the interaction between the barley alpha-amylase/subtilisin inhibitor and the subtilisin savinase reveal a novel mode of inhibition

Subtilisins represent a large class of microbial serine proteases. To date, there are three-dimensional structures of proteinaceous inhibitors from three families in complex with subtilisins in the Protein Data Bank. All interact with subtilisin via an exposed loop covering six interacting residues. Here we present the crystal structure of the complex between the Bacillus lentus subtilisin Savinase and the barley α-amylase/subtilisin inhibitor (BASI). This is the first reported structure of a cereal Kunitz-P family inhibitor in complex with a subtilisin. Structural analysis revealed that BASI inhibits Savinase in a novel way, as the interacting loop is shorter than loops previously reported. Mutational analysis showed that Thr88 is crucial for the inhibition, as it stabilises the interacting loop through intramolecular interactions with the BASI backbone.     

Characterization of β-amylase alleles in 79 barley varieties with pyrosequencing

β-Amylase is involved in the starch degradation process and therefore influences grain quality. Starch degradation efficiency is dependent on the enzyme thermostability during malting and mashing. Four alleles resulting in different enzyme thermostability are known. These alleles are distinguished by coding single nucleotide polymorphism (cSNP). Pyrosequencing was used for cSNP genotyping of β-amylase alleles in 79 spring barley varieties by using analyser PSQ MA96 System (Pyrosequencing, Biotage). A new cSNP was revealed by means of Pyrosequencing analysis of sequence flanking cSNP⁶⁹⁸, thus recognizing a fifth β-amylase allele. Pyrosequencing is a high-throughput, fast, and precise system for barley SNP genotyping.     

Dickeya dadantii pectic enzymes necessary for virulence are also responsible for activation of the Arabidopsis thaliana innate immune system

Soft‐rot diseases of plants attributed to Dickeya dadantii result from lysis of the plant cell wall caused by pectic enzymes released by the bacterial cell by a type II secretion system (T2SS). Arabidopsis thaliana can express several lines of defence against this bacterium. We employed bacterial mutants with defective envelope structures or secreted proteins to examine early plant defence reactions. We focused on the production of AtrbohD‐dependent reactive oxygen species (ROS), callose deposition and cell death as indicators of these reactions. We observed a significant reduction in ROS and callose formation with a bacterial mutant in which genes encoding five pectate lyases (Pels) were disrupted. Treatment of plant leaves with bacterial culture filtrates containing Pels resulted in ROS and callose production, and both reactions were dependent on a functional AtrbohD gene. ROS and callose were produced in response to treatment with a cellular fraction of a T2SS‐negative mutant grown in a Pels‐inducing medium. Finally, ROS and callose were produced in leaves treated with purified Pels that had also been shown to induce the expression of jasmonic acid‐dependent defence genes. Pel catalytic activity is required for the induction of ROS accumulation. In contrast, cell death observed in leaves infected with the wild‐type strain appeared to be independent of a functional AtrbohD gene. It was also independent of the bacterial production of pectic enzymes and the type III secretion system (T3SS). In conclusion, the work presented here shows that D. dadantii is recognized by the A. thaliana innate immune system through the action of pectic enzymes secreted by bacteria at the site of infection. This recognition leads to AtrbohD‐dependent ROS and callose accumulation, but not cell death.     

Control of carbohydrase formation by gibberellic acid in barley endosperm

α-Amylase, limit dextrinase and α-glucosidase were induced by gibberellic acid in barley grain from which the embryos had been excised. The responses to different concentrations of gibberellic acid were similar for the three carbohydrases. However α-glucosidase activity increased before the other two enzymes, and a low level of α-glucosidase was found in ungerminated grain. Experiments with cycloheximide and density-labelling in deuterium oxide suggest that the observed increases in activity are the result of de novo protein synthesis. The induction of these enzymes was reduced by pre-incubation in actinomycin D.     

Purification and Characterization of an Endopolygalacturonase Produced by Sclerotinia Sclerotiorum

An endopolygalacturonase (endo-PG), was purified from the culture medium of a local isolate of Sclerotinia sclerotiorum with ammonium sulphate precipitation, cation exchange chromatography and gel filtration. The purified endo-PG had a molecular mass of approximately 18 kDa estimated by gel filtration. The isoelectric point was determined by isoelectric focusing to be approximately 8, suggesting that PG II possesses a net positive charge at physiological pHs. The pH optimum for the enzyme was at pH 4.5. The endo-PG showed essentially the same affinity for pectin and polygalacturonic acid as substrates. This revised version was published online in July 2006 with corrections to the Cover Date.     

Location of sugars in barley seeds during germination by NMR microscopy

The distribution and fluctuation of sugars in germinating barley seeds were examined by ¹³C nuclear magnetic resonance (NMR) spectroscopy, ¹H-NMR imaging and ¹H-NMR localized spectroscopy in relation to morphology. Maltose, sucrose, fructose and oils were detected in intact imbibed seeds by ¹³C-NMR spectra. During the first 6 d of germination, the maltose content increased and the oil content gradually decreased, whilst the levels of sucrose and fructose remained constant. Sugars were located by ¹H-NMR images and ¹H-NMR localized spectra in the vascular bundle of the seeds as well as in the solubilized endosperm. They were also detected in the shoots. The sugars detected in an 80% ethanol shoot extract were sucrose and glucose, which were located in the vascular bundles but not in the mesophyll cells of the coleoptile. They were also located in the basal part of the shoot, but not above 7 mm from the scutellum. The data suggest that the sugars are primarily transported through the vascular bundles and, at the same time, rapidly incorporated into mesophyll cells in the leaves.