Restriction fragment length polymorphism markers in relation to quantitative characters

Summary A simple consideration of the potential of restriction fragment length polymorphism mapping, as a method of analysing the inheritance of quantitative characters, suggests that there are severe limitations to the utility of this approach.     

The irradiation of Babesia bovis. 1. The difference in pathogenicity between irradiated and non-irradiated populations

Babesia bovis parasites attenuated by 35 krads gamma irradiation and parasites not exposed to irradiation, were injected into intact 2-year-old Hereford steers. All five animals receiving non-irradiated blood died but the five animals which received irradiated blood were only mildly affected. Highly significant differences were observed in changes to plasma fibrinogen, serum fibrinogen-like proteins, packed cell volume, partial thromboplastin time, prothrombin time, blood kinins, and plasma kininogen levels in the control animals but non-significant changes in these parameters occurred in the group receiving iradiated blood. Significant changes in the antiplasmin alpha 2M, and the antithrombin levels occurred in control cattle but not in the group receiving irradiated blood. Parasite multiplications rates and maximum parasitaemias were similar in both groups. Irradiation reduced the dose of living parasites from 1 x 10(8) to 2.5 x 10(3), but this was not the reason for the mild reactions. It was concluded that irradiation had selected an avirulent parasite population.     

The fish populations of some streams in Wales and northern England in relation to acidity and associated factors

Electrofishing and water quality surveys were carried out on 60 upland moorland streams in central and north Wales and the Peak District of England (south Pennines). A number of biological characteristics of the fish populations were recorded, including species representation, population density and biomass and, for brown trout, Salmo trutta L., only, growth, condition factor and diet. The stream waters were also analysed over a 2-year period for pH, calcium, aluminium and the heavy metals copper, zinc and lead.
Mean pH levels in the streams ranged from 5.0 to 7.6, with calcium concentrations in the range 0.80–27 mg 1⁻¹. Trace metal concentrations (Al, Cu, Zn, Pb) tended to be elevated in the more acid streams. The latter had fewer fish species, and a higher proportion was fishless, 73% at pH < 5.5 compared with 6% at pH >6.5. Trout and eels, Anguilla anguilla L., predominated at lower pH values, but at reduced population levels.
Dietary composition and stomach fullness of trout were similar throughout the stream pH range. More than 40% of the diet was derived from surface and terrestrial sources, supplementing autochthonous items. Growth (as back-calculated length to end of first year of life) and condition factor did not vary significantly with respect to stream acidity. It is thus concluded that the impoverishment of trout populations in the more acid streams was not a second-order effect acting through the lower trophic levels.
Water quality acting directly on fish would appear to account for the poor status of salmonid fisheries in acid streams. Absence or paucity of salmonids was related to high levels of labile monomeric aluminium (>40 μgl⁻¹) or Cu-Zn-Pb toxicity (>0.4 t-LC50 to rainbow trout, Salmo gairdneri Richardson). Limiting values in this study correspond well with published laboratory and field data.     

Temperature-related divergence in experimental populations of Drosophila melanogaster. II. Correlation between fitness and body dimensions

From a laboratory stock of Drosophila melanogaster (Oregon), reared for more than 20 years at 18° C, a new population was derived and maintained at 28° C for 8 years. The chromosomal and cytoplasmic contribution to genetic divergence between the two populations was estimated. Six body traits and reproductive fitness were taken into account. The third chromosome is responsible for the adaptive difference for temperature between the two lines. Temperature-selected genes which control body size are located on the second and third chromosomes, although the contribution of each chromosome depends on the environment in which the flies develop. The correlation between the chromosomal and cytoplasmic contributions to different traits and fitness, changes with temperature. At 28° C the correlation between fitness and each body trait is proportional to the response to selection exhibited by each of them, but this is not true at 18° C. Body size has, therefore, an adaptive significance in relation to temperature, which is expressed only in the environment where selection occurs. Cytoplasmic genes affect almost all characters to an extent similar to that of chromosomal genes. Inter-chromosomal and nucleo-cytoplasmic interactions are present and also change with temperature. In general, genes selected in a given environment produce greater phenotypic changes in that environment than in another. The population that experienced both temperatures is fitter in both environments, suggesting that the capacity to adapt to warm temperatures depends on genes other than those which are involved in the adaptation to cold.     

Variability of allozyme and cpSSR markers in the populations of Siberian spruce

The variability of 21 allozyme and three microsatellite loci of chloroplast DNA (cpDNA) was studied in the populations of Siberian spruce (Picea obovata Ledeb.) from Irkutsk oblast, Magadan oblast, Buryatia, and Mongolia. It was demonstrated that the highest level of genetic diversity among the examined populations at both allozyme and microsatellite loci was observed in the Tulyushka population from Irkutsk oblast. The lowest level of genetic diversity was observed in marginal isolated populations of Bogd Uul and Magadan. In the relict spruce population from Olkhon Island, differing from the other populations in the lowest allelic diversity of both types of markers, no expected decline of expected heterozygosity and haplotype diversity was observed. In this population, the variability parameters mentioned were close to the population mean. The obtained intrapopulation and intraspecific variability parameters of allozyme and microsatellite loci of chloroplast DNA and the data on the population differentiation at these loci indicate that the given markers can be used for the analysis of the population structure of Siberian spruce.     

Monitoring the seeds of chronically irradiated indigenous populations of Plantago lanceolata L. Variability in the progeny

The results of the morphometric study of Plantago lanceolata L. grown, in nursery, from seeds of the first and second post-accident reproductions within the thirty-kilometer zone around the crippled Chernobyl reactor show no relationship between the alterations in some quantitative indices and the variability of gamma-radiation background in places where maternal plants grow.     

Changes in the kidney peroxidase activity in fish exposed to some industrial pollutants.

Fish under abnormal environmental conditions suffer from retarded growth and other physiological dysfunctions related to thyroxine deficiency. In teleosts lacking a definite thyroid gland the kidney plays a very important role in biosynthesis of the thyroidal hormone, in which peroxidase has an indirect action. Effects of some industrial pollutants and factory effluents on fish kidney peroxidase activity were recorded in Ophicephalus punctatus and Clarias batrachus. At concentrations of the pollutants at which 70-100% of the fish survive the exposure, peroxidase activity was greatly inhibited, indicating that even sub-lethal doses of toxicants may cause drastic changes in the physiological systems. The peroxidase activity increased well above the control levels at 5-h and 27-h exposures in some cases, but declined towards the end of the test.     

Innervation of the carotid body. An experimental quantitative study

The innervation of the carotid body in the cat was studied by means of light- and electron-microscopic techniques. Sinus nerve resection, glossopharyngeal resection, bilateral cervical sympathectomy, excisions of two nerves, and injection of 6-hydroxydopamine (6-OH-DA) were performed in different groups of animals. It was found that resection of the sinus nerve produces a rapid phase of degeneration of intralobular fibers and synaptic boutons, followed by a reinnervation with a progressive reappearance of these elements. This reinnervation is retarded by sympathectomy and prevented by 6-OH-DA. It is therefore concluded that reinnervation is due to collateral regeneration of nearby sympathetic fibers. Resection of the sinus nerve produces an increase in the number of argentaffin cells and dense-cored vesicles in the cytoplasm of principal cells. These findings suggest the existence of efferent synaptic contacts between this nerve and principal cells. Part of the intralobular fibers and synaptic boutons degenerate after bilateral sympathectomy demonstrating that sympathetic axons connect synaptically to the principal cells. Sympathetic fibers reach the carotid body, not only from branches of the cervical plexuses but also from fibers running in the adventitia of the common carotid artery, and via glossopharyngeal and sinus nerves. The vagus nerve contributes a few fibers to the parenchymal lobules of the carotid body.     

Genetic coadaptation in the chromosomal polymorphism of Drosophila subobscura II. Changes of gametic disequilibrium in experimental populations

Experimental populations were examined for temporal changes of gametic disequilibria between allozyme loci (Lap and Pept-1) and gene arrangements of the O chromosome of Drosophila subobscura (O _st and O ₃₊₄₊₇) under several environmental conditions. In the foundation of the experimental populations a genetic perturbation was carried out in order to test the relevance of the current hypotheses used to explain the allozyme-inversion associations observed in natural populations. Differential changes of gametic disequilibria were detected over generations under the different environmental conditions. Mere mechanical or stochastic factors cannot explain the results and natural selection is probably the major agent generating the detected gametic associations. The observations are interpreted as a proof of coadaptation of D. subobscura inversions.     

Chromosome length values in digenomic buttercups [Ranunculaceae] and the relation to DNA content

Root-tip chromosome complement length ratios were determined in F1 hybrids combinining two haploid (n = 8) genomes each from different species, to form a series AB, AC, AD, ... AI. The observed values, for the length ratios B/A, C/A, etc., ranged from 0.53 to 1.0. It is noted that the values form a quasilinear distribution, with a slope of 1.0, when plotted against the known 4C DNA values of the species having a range from appr. 1.1 to 2.2 × 10^?11 g. Also observed, but not numerically evaluated was some apparently related variation in chromosome “width”. DNA-related variation in root-tip chromosome size in these buttercups may be three-dimensional; however, the magnitude of the observed length differentials and the 1∶1 correlation with DNA content suggest that it occupies predominantly the first dimension.     

Changes in the system of cyclic nucleotides in irradiated body tissues

It has been shown that the content of cAMP in the rat thymus, spleen, and liver 1 and 3 days after gamma-radiation with 7.5 Gy decreases, and that of cGMP increases. Analogous dynamics has been revealed when studying adenylate cyclase and guanylate cyclase activities. The activity of cAMP and cGMP phosphodiesterases increased during the first period of study but subsequently it showed no distinction from the initial data level. The revealed postradiation changes in the content of cyclic nucleotides seem to be basically caused by the cyclases activity alterations.     

Point perturbation analysis of experimental data: II. The statistics of relaxation length values of pseudo-random errors

The statistics of relaxation lengths for pseudo-random deviates as determined by point perturbation analysis (E. Di Cera, F. Andreasi Bassi and G. Arcovito Biophys. Chem. 34 (1989)239),has been constructed by a Monte Carlo study. The values of the relaxation length, L, approximately follow a Gamma distribution. The results allow for a statistical estimation of relaxation profiles and provide a test for randonmess of residuals which is more accurate than other standard procedures.     

Bayesian analysis of linkage between genetic markers and quantitative trait loci. II. Combining prior knowledge with experimental evidence

Summary A Bayesian method was developed for identifying genetic markers linked to quantitative trait loci (QTL) by analyzing data from daughter or granddaughter designs and single markers or marker pairs. Traditional methods may yield unrealistic results because linkage tests depend on number of markers and QTL gene effects associated with selected markers are overestimated. The Bayesian or posterior probability of linkage combines information from a daughter or granddaughter design with the prior probability of linkage between a marker locus and a QTL. If the posterior probability exceeds a certain quantity, linkage is declared. Upon linkage acceptance, Bayesian estimates of marker-QTL recombination rate and QTL gene effects and frequencies are obtained. The Bayesian estimates of QTL gene effects account for different amounts of information by shrinking information from data toward the mean or mode of a prior exponential distribution of gene effects. Computation of the Bayesian analysis is feasible. Exact results are given for biallelic QTL, and extensions to multiallelic QTL are suggested.     

Mapping and analysis of quantitative trait loci in experimental populations

Simple statistical methods for the study of quantitative trait loci (QTL), such as analysis of variance, have given way to methods that involve several markers and high-resolution genetic maps. As a result, the mapping community has been provided with statistical and computational tools that have much greater power than ever before for studying and locating multiple and interacting QTL. Apart from their immediate practical applications, the lessons learnt from this evolution of QTL methodology might also be generally relevant to other types of functional genomics approach that are aimed at the dissection of complex phenotypes, such as microarray assessment of gene expression.     

Adaptation of experimental yeast populations to stressful conditions in relation to population size

The purpose of this experiment was to find out how a population becomes adapted to extremely stressful conditions as its environment deteriorates. We created a deteriorating environment for experimental selection lines of yeast by a stepwise increase in the concentration of salt in the growth medium. After each step, we tested the ability of the lines to grow at a high concentration of salt near the lethal limit for the ancestral strain. We found that mutations enhancing growth in this highly stressful environment began to spread at intermediate salt concentrations. The degree of enhancement was related to effective population size by a power law with a small exponent. The effect size of these mutations also increased with the population size in a similar fashion. From these results, we interpret adaptation to lethal stress as an indirect response to selection for resistance to previous lower levels of stress in a deteriorating environment. This suggests that the pattern of genetic correlation between successively higher levels of stress is an important factor in facilitating evolutionary rescue.     

Mathematical modeling of the dynamics of the intestinal epithelium in non-irradiated and irradiated mammals]

A mathematical model has been developed to describe the dynamics of the crypt-villus system of the small intestine epithelium in nonirradiated and chronically irradiated mammals. The model involves the chalone mechanism of regulation of crypt cell reproduction and represents a system of nonlinear differentiation equations. The model presents the dynamics of the small intestine epithelium in nonirradiated animals, including stable fluctuations of the concentrations of crypt and villus cells (the limited cycle), and simulates quantitatively the impairment of the intestinal epithelium in small laboratory animals subjected to long-term irradiation.