Effects of forest modification on bird community composition and seed removal in a heterogeneous landscape in South Africa

Human disturbance threatens and modifies forest ecosystems worldwide. Previous studies have investigated the effects of human impact on local bird communities in disturbed forests, but we still lack information on how bird species richness and ecological processes respond to different forest modifications present at a landscape scale. In a heterogeneous South African landscape, we chose six types of indigenous scarp forest, differing in the intensity of human disturbance: continuous natural forests and natural forest fragments in nature reserves, forest fragments in eucalyptus plantations, fragments in the agricultural matrix, forest gardens and secondary forests in game reserves. In 36 study sites, we investigated the bird community using point counts and observed the seed removal of birds at the native tree species Celtis africana. Species richness did not differ among the forest types, but abundance varied significantly with most birds observed in fragments in the agricultural matrix, forest gardens, and secondary forests. The higher bird abundance in these forests was mainly due to forest generalists, shrubland and open country species whereas forest specialists were rarely present. Changes in species composition were also confirmed by multivariate analysis which clearly separated bird communities by forest type. Frugivore abundance in C. africana was highest in natural forest fragments, fragments in the agricultural matrix, forest gardens and secondary forests. The same trend was found for the estimated total number of fruits removed per C. africana tree, though the differences among forest types were not significant. Consequently, modified forests seem to maintain important ecological functions as they provide food sources for generalist species which may, due to their mobility, enhance natural plant regeneration. However, we could show that protected forest habitats are important refugees for specialist species sensitive to human disturbance.     

Avian community composition in isolated forest fragments: a conceptual revision

Forest birds do not respond equally to effects of deforestation: some species are absent from small fragments, some species increase in relative abundance in isolated fragments, while others are not present in fragments that appear to be of sufficient quality and area to meet their ecological requirements. Mechanisms currently associated with forest fragmentation are insufficient to predict how populations of individual species respond to deforestation. Based on published data representing 573 forest fragments, we examined the effects of deforestation on the relative abundance of birds in isolated forest fragments. We tested the prediction that species exhibit differential responses to deforestation based on their mean body mass. We found that forest bird communities in small, isolated forests can be generally predicted based on the home range needs and the average mass of individual bird species; mass may be an indicator of competitive abilities. Large and small species are not present and medium-sized species may increase in relative abundance in these forests. The limitations and implications of this pattern are discussed.     

Spatial genetic structure of a small rodent in a heterogeneous landscape

Gene flow in natural populations may be strongly influenced by landscape features. The integration of landscape characteristics in population genetic studies may thus improve our understanding of population functioning. In this study, we investigated the population genetic structure and gene flow pattern for the common vole, Microtus arvalis, in a heterogeneous landscape characterised by strong spatial and temporal variation. The studied area is an intensive agricultural zone of approximately 500 km² crossed by a motorway. We used individual-based Bayesian methods to define the number of population units and their spatial borders without prior delimitation of such units. Unexpectedly, we determined a single genetic unit that covered the entire area studied. In particular, the motorway considered as a likely barrier to dispersal was not associated with any spatial genetic discontinuity. Using computer simulations, we demonstrated that recent anthropogenic barriers to effective dispersal are difficult to detect through analysis of genetic variation for species with large effective population sizes. We observed a slight, but significant, pattern of isolation by distance over the whole study site. Spatial autocorrelation analyses detected genetic structuring on a local scale, most probably due to the social organisation of the study species. Overall, our analysis suggests intense small-scale dispersal associated with a large effective population size. High dispersal rates may be imposed by the strong spatio-temporal heterogeneity of habitat quality, which characterises intensive agroecosystems.     

Spatial constraint of peatland butterfly occurrences within a heterogeneous landscape

The occurrence of ten butterfly taxa (Clossiana eunomia dawsonii, Clossiana freija, Clossiana frigga, Clossiana titania, Coenonympha inornata, Erebia discoidalis, Incisalia augustinus, Lycaena dorcas, Lycaena epixanthe, Oeneis jutta) was analyzed within three acid peatland habitat types from the Lake Superior drainage basin of northwestern Wisconsin. Both first- (nearest-neighbor spatial analysis) and second-order (Ripley's K) spatial point process statistics were used to identify the extents over which each distribution pattern significantly deviated from random expectations. Versions of these tests were used that identified significant spatial pattern uncorrelated to habitat location and habitat preference. These analyses documented non-random occurrence patterns in seven species. Deviations from random were largely confined to two extents: <50 km and 70–100+ km. The majority of non-random patterns at <50 km extents were examples of aggregation, while the majority of non-random patterns noted at the 70–100+ km scale were examples of segregation. These results demonstrate that even for winged animals inside a limited landscape, spatially constrained processes can be important determinants of distribution. It is likely that metapopulation dynamics and dispersal limitation help explain why aggregation is dominant at small scales. The mechanisms underlying the predominance of segregation at large scales are less clear, but may be related to migration history and/or weak environmental gradients.     

Avian life-history determinants of local extinction risk in a hyper-fragmented neotropical forest landscape

The fact that species vary in their vulnerability to extinction is well documented, but the reasons for these differences remain poorly understood. Why should some species/families/guilds decline rapidly with increasing anthropogenic disturbance, while others either tolerate or proliferate in disturbed habitats? We investigated the bird species composition in 31 primary forest patches of varying size in a region of the Amazonian 'Arc of Deforestation' and assessed which species life-history traits predisposed individual species to extinction. Medium-sized non-flocking canopy frugivores/ominvores of low primary forest dependence were least likely to go extinct in small patches, while small-bodied flock-following primary-forest-dependent terrestrial insectivores were most fragmentation sensitive. We found highly idiosyncratic relationships between the minimum size of forest patches occupied by different species and their territory size requirements estimated based on other Amazonian studies. This suggests that avian assemblages in forest fragments primarily comprise species that either have good dispersal abilities or are highly tolerant to the non-forest matrix, rather than those whose minimum spatial requirements can be met by the size of available forest fragments.     

The effect of woodland area on avian community composition in a fragmented southern UK landscape and associated management recommendations

ABSTRACT

Capsule: Smaller woodlands not only support fewer species but also show different avian community composition due to loss of woodland interior and an increase in edge habitat.

Aims: To use observed community composition changes, rather than traditional total species richness-area relationships, to make area-specific management recommendations for optimizing woodland habitat for avian communities in fragmented landscapes.

Methods: 17 woodlands were selected in Oxfordshire, UK, with areas between 0.2 and 120 ha. Three dawn area searches were conducted in each woodland between 1st April and 28th May 2016 to record encounter rates for each species. The impact of internal habitat variation on woodland comparability was assessed using habitat surveys.

Results: Woodlands with area less than 3.6 ha showed a significant positive relationship between total avian species richness and woodland area. Woodlands with area over 3.6 ha were all consistent with a mean (± se) total richness of 25.4?±?0.6 species, however the number of woodland specialists continued to increase with woodland area. Woodland generalists dominated the total encounter rate across the area range, however the fractional contribution of woodland specialists showed a significant positive correlation with woodland area, while the fractional contribution of non-woodland species significantly decreased. Non-woodland species numbers peaked in mid-sized woodlands with enhanced habitat heterogeneity.

Conclusions: Community composition analysis enabled more targeted recommendations than total species richness analysis, specifically: large woodlands (over 25?ha) in southern UK should focus conservation efforts on providing the specific internal habitats required by woodland specialists; medium-sized woodlands (between approximately 4 and 25?ha) should focus on promoting internal habitat variety, which can benefit both woodland species and non-woodland species of conservation concern in the surrounding landscape; small woodlands (under 4?ha) should focus on providing nesting opportunities for non-woodland species and on improving connectivity to maximize habitat for woodland generalists and facilitate movement of woodland specialists.     

Amphibian diversity increases in an heterogeneous agricultural landscape

As a group amphibians are the vertebrates most affected by anthropic activity, particularly by agriculture. The rapid advance of the agricultural frontier makes it important to identify the role of agroecosystems as habitat supply for amphibians. We analyzed the differences in amphibian assemblages and populations between habitats with different plant covers and different degrees of human intervention in northwestern Argentina. For three years we conducted 114 high frequency trap samplings to quantify abundance, specific composition and species richness of amphibian assemblages in three habitat types (lemon and sugarcane crops and secondary forest) of a piedmont agroecosystem of Tucumán province. Crops hosted more species and individuals than secondary forests, but the specific composition of forest was different from that of crops suggesting that they could be complementary. Although the assemblage abundance of every observation responded to climate, the strong effect of sampling year was not related to climatic factors suggesting that there might be long term fluctuations that were not analyzed. We also found that responses to agricultural practices were species specific, so no generalizations about these practices should be done. Our study shows that cultivated areas are not hostile environments for amphibians since they can lodge huge amphibian populations and that the occurrence of disturbances associated to agricultural practices is not necessarily reflected in a decrease in the abundance and richness of amphibians in the short term. However, our results also show that forested lands are necessary to lodge some specialist species which are very rare in the croplands. This suggests that environmental heterogeneity generated by the combination of natural and cultivated patches can increase biodiversity at landscape scale because this allows the coexistence of species related to either kind of environment.     

Endozoochorous seed dispersal by cattle and horse in a spatially heterogeneous landscape

Seed dispersal has become an important issue in plant ecology and restoration management. In this paper we examined dung germinating seed content and seed deposition patterns of horses (Shetland and Konik breeds) and Scottish Highland cattle grazing two coastal dune nature reserves. Two times 2.5 l of fresh dung from each type of herbivore were collected during seven sessions in the main fruiting season. Dung samples were placed under greenhouse conditions after drying and cooling. Animal defecation patterns were derived from a study of herbivore activities during 6 h observation sessions 8 times a month. One hundred and seventeen plant species i.e. 27% of all species occurring in the study area, were recorded as seedlings emerging from the dung samples. The most abundantly and frequently recorded plant species were Urtica dioica, Juncus spp. and different species of Poaceae and Caryophyllaceae. In general seedling density is high (1158 seedlings/dung sample). Seedling density and species richness were further analysed in order to detect temporal variability and possible animal and site related characteristics. Dung deposition patterns reflect a non-random use of habitats and hence a non-random seed deposition among habitats. Calculated seed deposition per square meter ranged from a few (<10 germinating seeds) to more than 100 in the most frequently selected habitats. From the herbivores’ selective habitat use and their estimated mean retention time we can further assume their ability for inter-habitat endozoochorous seed dispersal. This characteristic of large herbivores is further discussed in the light of nature management and restoration.Indra Lamoot is an aspirant of FWO-Flanders.     

Seasonal subsidy stabilizes food web dynamics: Balance in a heterogeneous landscape

Resource subsidies from external habitats can substantially affect the food web dynamics of local habitats. In this paper, we explore a mathematical model that is tailored for a stream food web, studied by Nakano and colleagues, in which consumers, in situ prey and subsidies all show seasonal fluctuation. The model reveals that the food web dynamics are stabilized if subsidies increase in summer when in situ productivity is low. Consumer dynamics are stabilized because subsidies complement seasonal resource deficiency. In situ prey dynamics are stabilized because subsidies indirectly balance the predation pressure by consumers, with seasonal change in prey carrying capacity. In summer when prey carrying capacity is low, seasonally abundant subsidies indirectly decrease predation pressure, whereas in winter, with high prey carrying capacity, scarce subsidies increase the predation pressure. Our results suggest that temporal productivity differences between spatially linked habitats are important to promote the stability of food web dynamics in a landscape context.     

Decelerating spread of West Nile virus by percolation in a heterogeneous urban landscape

Vector-borne diseases are emerging and re-emerging in urban environments throughout the world, presenting an increasing challenge to human health and a major obstacle to development. Currently, more than half of the global population is concentrated in urban environments, which are highly heterogeneous in the extent, degree, and distribution of environmental modifications. Because the prevalence of vector-borne pathogens is so closely coupled to the ecologies of vector and host species, this heterogeneity has the potential to significantly alter the dynamical systems through which pathogens propagate, and also thereby affect the epidemiological patterns of disease at multiple spatial scales. One such pattern is the speed of spread. Whereas standard models hold that pathogens spread as waves with constant or increasing speed, we hypothesized that heterogeneity in urban environments would cause decelerating travelling waves in incipient epidemics. To test this hypothesis, we analysed data on the spread of West Nile virus (WNV) in New York City (NYC), the 1999 epicentre of the North American pandemic, during annual epizootics from 2000-2008. These data show evidence of deceleration in all years studied, consistent with our hypothesis. To further explain these patterns, we developed a spatial model for vector-borne disease transmission in a heterogeneous environment. An emergent property of this model is that deceleration occurs only in the vicinity of a critical point. Geostatistical analysis suggests that NYC may be on the edge of this criticality. Together, these analyses provide the first evidence for the endogenous generation of decelerating travelling waves in an emerging infectious disease. Since the reported deceleration results from the heterogeneity of the environment through which the pathogen percolates, our findings suggest that targeting control at key sites could efficiently prevent pathogen spread to remote susceptible areas or even halt epidemics.     

Coexistence of carnivores in a heterogeneous landscape: habitat selection and ecological niches

Understanding distributional patterns and mechanisms used by species for habitat selection is crucial to adopt effective land management policies in terms of biodiversity conservation. A heterogeneous landscape may allow coexistence of species. That coexistence will be dependent on the availability of the resources in the habitat that has to be sufficient to fulfil their basic needs. The present study aimed to investigate habitat selection, niche breadth and niche overlap of three sympatric carnivore species (Vulpes vulpes, Genetta genetta and Martes foina) in a typically fragmented landscape from Central Portugal, using camera-trapping techniques. The results obtained revealed that the investigated species use the available habitats differently and in a non-random way. The red fox showed the most specialized behaviour, positively selecting coniferous forests. The common genet preferred eucalyptus, avoiding old-growth mixed woodland, in contrast with stone marten that exhibited a strong preference for this late habitat, avoiding eucalyptus. Concerning the niche breadth, the genet had the highest value while the red fox had the lowest one. The results obtained at the camera-trap level showed that the highest niche overlap occurred between the genet and the stone marten which suggests that these species can coexist and share the available resources. Regarding the habitat level, the greatest niche overlap was found for the stone marten and the red fox, indicating the exploration of the same general habitat conditions by both species. The results obtained in the present study support the concept that landscape complexity allows coexistence between species within the same trophic level.     

Fire-created habitats support large mammal community in a Mediterranean landscape

Large mammals play significant roles in shaping the trophic structure of terrestrial ecosystems and affect the form of vegetation growth in many habitats. We studied large mammal community in a Mediterranean habitat mosaic generated by fires originally dominated by pine forests. We conducted camera-trapping surveys in three study sites with different fire histories, and we recorded eight large mammal species including brown bear (Ursus arctos), caracal (Caracal caracal), and wild goat (Capra aegagrus), which are of conservation importance. The mammal community found in the study sites was functionally diverse, including herbivores, omnivores, carnivores, seed dispersers, soil diggers, main preys, and top predators. The site burned 13 years ago had higher species richness than can be expected from a random pattern, but this was not the case in 30- and >40-year-old sites, showing the importance of relatively younger sites for large mammals. Eurasian badger had more probability to have more abundance in places with more open vegetation while wild goat had higher abundance in more dense vegetation. Young individuals of wild goat, brown bear, and wild boar were also detected in the study sites. The results indicate that burned habitats harbor a phylogenetically and functionally diverse large mammal community in landscapes originally dominated by Mediterranean pine forests. Therefore, these forests continue to retain importance for the large mammals after the fire, and burned habitats should be taken into consideration for the conservation and management plans together with mature forests in Mediterranean ecosystems.     

The non-native charophyte Nitellopsis obtusa (starry stonewort) influences shifts in macrophyte diversity and community structure in lakes across a geologically heterogeneous landscape

Aquatic Ecology - Nitellopsis obtusa&nbsp;is a non-native charophyte introduced to the Laurentian Great Lakes in the 1970s. Over the last decade,&nbsp;there have been&nbsp;increased...     

Factors controlling community structure in heterogeneous metacommunities

1.  Modern theories of species coexistence recognize the importance of environmental heterogeneity.
2.  Despite the existence of many observational studies, few experimental studies have evaluated the extent to which, and mechanisms by which, fixed spatial heterogeneity increases community diversity and alters community structure.
3  In experimental protist communities, we found that non-spatial mechanisms unrelated to heterogeneity were responsible for a large component of baseline diversity. Above this baseline, fixed spatial heterogeneity produced small but predictable increases in metacommunity diversity through species sorting, while heterogeneity and dispersal together altered local community structure (composition and relative abundance) through mass effects.
4.  Our study illustrates that heterogeneity is not always the strongest driver of diversity, while experimentally demonstrating mechanisms by which heterogeneity alters community structure.     

Spatial patterns in long-distance dispersal of Quercus ilex acorns by jays in a heterogeneous landscape

In this paper, I analyse the interaction between the holm-oak Quercus ilex , and one of its main dispersers, the European jay Garrulus glandarius , in an heterogeneous Mediterranean landscape. I quantify the spatial dispersal pattern of the seed shadow at two spatial scales, landscape (among patches) and microhabitat (within patches), by directly tracking the movement of seeds. Two main traits of the jay-mediated dispersal of holm-oak acorns across the landscape, the spatial pattern of dissemination and the distance from the source tree, are significantly and directly influenced by jay activity. Jays moved acorns nonrandomly, avoiding one main patch type of the study area to cache acorns, the shrubland-grasslands, and moving most of the acorns to pine stands, whether afforestation or open pinewoods. Within each patch type, jays had also a strong preference for caching acorns in some microhabitats, since>95% of the acorns dispersed by jays were cached beneath pines. The distance of holm-oak acorn dispersal was long in the study site, over 250 m, with some dispersals occurring up to 1 km from the source oaks. The shape of the dispersal kernel function fitted to the dispersal pattern produced by jays differed from those quantified for many other plant species. Jay-mediated dispersal had two components, one local and another produced by long-distance dispersal. Due to the heterogeneity of these Mediterranean environments, this difference in scale overlaps with a difference in habitat composition, short distances events resulting in dispersals within the same oak stands and long distance events resulting in dispersal outside of oak stands, usually to other vegetation units. Jay activity and movement pattern can have thus dramatic effects on both the local regeneration as well as the potential for regional spread of the holm-oak populations.     

The relative importance of landscape and community features in the invasion of an exotic shrub in a fragmented landscape

Although invasive plants are recognized as a major ecological problem, little is known of the relative importance of plant community characteristics versus landscape context in determining invasibility of communities. We determined the relative importance of community and landscape features of 30 woodlots in influencing the invasion of Lonicera maackii. We sampled woodlots using the point‐quarter method and calculated canopy openness and basal areas and densities of shrub, sapling and tree species, as well as woody species richness. We used aerial photos and ArcView GIS to calculate landscape parameters from the same woodlots using a buffer distance of 1500 m. We used logistic and linear regression analyses to determine the community and landscape factors that best explain L. maackii presence and density. We also tested whether woodlot invasion by L. maackii begins at woodlot edges. Presence of L. maackii was significantly explained only by distance from the nearest town (logistic regression, p=0.017); woodlots nearer town were more likely to be invaded. Among invaded woodlots, density of L. maackii was positively related to the amount of edge in the landscape (partial R²=0.592) and negatively related to total tree basal area (partial R²=0.134), number of native woody species (partial R²=0.054), and sapling shade tolerance index (partial R²=0.054). Lonicera maackii in woodlot interiors were not younger than those on the perimeters, leading us to reject the edge‐first colonization model of invasion. Our findings reveal that landscape structure is of primary importance and community features of secondary importance in the invasion of L. maackii. This shrub is invading from multiple foci (towns) rather than an advancing front. Connectivity in the landscape (i.e. the number of corridors) did not promote invasion. However, edge habitat was important for invasion, probably due to increased propagule pressure. The community features associated with L. maackii invasion may be indicators of past disturbance.     

Obtaining a spore free fungal community composition

Understanding basic ecological processes within fungal communities is complicated by the cryptic and often below-ground habitat of most fungi. Up to now, molecular methods, enabling analyses of community processes and interaction strategies, have been mainly based on internal transcribed spacer (ITS) DNA analyses. The fact that these DNA profiles are contaminated by dormant propagules and dead material is a well known draw-back, obscuring sound conclusions. Recently, precursor ITS rRNA was suggested as a solution to this problem, as it was hypothesised that dormant and dead material contains little or no precursor rRNA. Our results show that basidiospores do not contain precursor ITS rRNA and thus confirm this hypothesis. This implies that the precursor ITS rRNA should be used for analysis and characterization of active species composition, when contamination of ungerminated basidiospores should be avoided.     

Evaluating the effectiveness of landscape configuration metrics from landscape composition metrics

Although landscape configuration and landscape composition metrics are correlated theoretically and empirically, the effectiveness of configuration metrics from composition metrics has not been explicitly investigated. This study explored to what extent substantial information of configuration metrics increases from certain easily calculated and extensively used composition metrics and how strongly the effectiveness is influenced by different factors. The effectiveness of 12 landscape configuration metrics from the percentage of landscape (PLAND) of each land-use class and patch density (PD) was evaluated through the coefficient of determination (R ²) of multivariate stepwise linear regression analysis of 150 town-based landscape samples from three regions. The different landscape configuration metrics from PLAND and PD presented significantly different performances in terms of effectiveness [the contagion index and aggregation index possess minimal information, and the effective mesh size (MESH) and area-weighted mean patch fractal dimension possess abundant information]. Furthermore, the effectiveness of configuration metrics showed different responses to changing cell sizes and different land-use categorization in different regions (interspersion and juxtaposition index, patch cohesion index, and MESH exhibited large variations in R ² among the different regions). No single, uniform, consistent characteristic of effectiveness was determined across different factors. This new approach to understanding the effectiveness of configuration metrics helps clarify landscape metrics and is fundamental to landscape metric assessment.