Interactions between electron and proton currents in excised patches from human eosinophils

The NADPH-oxidase is a plasma membrane enzyme complex that enables phagocytes to generate superoxide in order to kill invading pathogens, a critical step in the host defense against infections. The oxidase transfers electrons from cytosolic NADPH to extracellular oxygen, a process that requires concomitant H+ extrusion through depolarization-activated H+ channels. Whether H+ fluxes are mediated by the oxidase itself is controversial, but there is a general agreement that the oxidase and H+ channel are intimately connected. Oxidase activation evokes profound changes in whole-cell H+ current (IH), causing an approximately -40-mV shift in the activation threshold that leads to the appearance of inward IH. To further explore the relationship between the oxidase and proton channel, we performed voltage-clamp experiments on inside-out patches from both resting and phorbol-12-myristate-13-acetate (PMA)-activated human eosinophils. Proton currents from resting cells displayed slow voltage-dependent activation, long-term stability, and were blocked by micromolar internal [Zn2+]. IH from PMA-treated cells activated faster and at lower voltages, enabling sustained H+ influx, but ran down within minutes, regaining the current properties of nonactivated cells. Bath application of NADPH to patches excised from PMA-treated cells evoked electron currents (Ie), which also ran down within minutes and were blocked by diphenylene iodonium (DPI). Run-down of both IH and Ie was delayed, and sometimes prevented, by cytosolic ATP and GTP-gamma-S. A good correlation was observed between the amplitude of Ie and both inward and outward IH when a stable driving force for e- was imposed. Combined application of NADPH and DPI reduced the inward IH amplitude, even in the absence of concomitant oxidase activity. The strict correlation between Ie and IH amplitudes and the sensitivity of IH to oxidase-specific agents suggest that the proton channel is either part of the oxidase complex or linked by a membrane-limited mediator.     

蚂蚁与排泄蜜露的同翅目昆虫的相互作用及其生态学效应

同翅目昆虫多为植食性害虫,但有些种类也是重要的经济昆虫。以蜜露为纽带,蚂蚁与排泄蜜露的同翅目昆虫在漫长的进化过程中逐渐形成了复杂而密切的关系。研究蚂蚁-同翅目昆虫之间的相互作用,有选择的防治或保护某些同翅目昆虫,并控制其在寄主植物上的数量,可提高经济效益。本文介绍蚂蚁与排泄蜜露的同翅目昆虫的相互作用,以及相互作用对节肢动物群落和寄主植物产生的生态学效益,提出研究过程中的不足,并探讨蚂蚁-同翅目昆虫之间的相互作用在生物防治、生物多样性及生态系统功能方面的重要意义,以促进种间关系研究的进一步发展。     

The roles and values of wild foods in agricultural systems

Almost every ecosystem has been amended so that plants and animals can be used as food, fibre, fodder, medicines, traps and weapons. Historically, wild plants and animals were sole dietary components for hunter–gatherer and forager cultures. Today, they remain key to many agricultural communities. The mean use of wild foods by agricultural and forager communities in 22 countries of Asia and Africa (36 studies) is 90–100 species per location. Aggregate country estimates can reach 300–800 species (e.g. India, Ethiopia, Kenya). The mean use of wild species is 120 per community for indigenous communities in both industrialized and developing countries. Many of these wild foods are actively managed, suggesting there is a false dichotomy around ideas of the agricultural and the wild: hunter–gatherers and foragers farm and manage their environments, and cultivators use many wild plants and animals. Yet, provision of and access to these sources of food may be declining as natural habitats come under increasing pressure from development, conservation-exclusions and agricultural expansion. Despite their value, wild foods are excluded from official statistics on economic values of natural resources. It is clear that wild plants and animals continue to form a significant proportion of the global food basket, and while a variety of social and ecological drivers are acting to reduce wild food use, their importance may be set to grow as pressures on agricultural productivity increase.     

Interactions between meat intake and genetic variation in relation to colorectal cancer

Meat intake is associated with the risk of colorectal cancer. The objective of this systematic review was to evaluate interactions between meat intake and genetic variation in order to identify biological pathways involved in meat carcinogenesis. We performed a literature search of PubMed and Embase using “interaction”, “meat”, “polymorphisms”, and “colorectal cancer”, and data on meat–gene interactions were extracted. The studies were divided according to whether information on meat intake was collected prospectively or retrospectively. In prospective studies, interactions between meat intake and polymorphisms in PTGS2 (encoding COX-2), ABCB1, IL10, NFKB1, MSH3, XPC (P_int = 0.006, 0.01, 0.04, 0.03, 0.002, 0.01, respectively), but not IL1B, HMOX1, ABCC2, ABCG2, NR1I2 (encoding PXR), NR1H2 (encoding LXR), NAT1, NAT2, MSH6, or MLH1 in relation to CRC were found. Interaction between a polymorphism in XPC and meat was found in one prospective and one case–control study; however, the directions of the risk estimates were opposite. Thus, none of the findings were replicated. The results from this systematic review suggest that genetic variation in the inflammatory response and DNA repair pathway is involved in meat-related colorectal carcinogenesis, whereas no support for the involvement of heme and iron from meat or cooking mutagens was found. Further studies assessing interactions between meat intake and genetic variation in relation to CRC in large well-characterised prospective cohorts with relevant meat exposure are warranted.

Electronic supplementary material

The online version of this article (doi:10.1007/s12263-014-0448-9) contains supplementary material, which is available to authorized users.     

Persistence of high diversity in non-equilibrium ecological communities: implications for modern and fossil ecosystems

Explaining the origin and maintenance of biodiversity is critical for understanding the potential consequences of present-day environmental change on ecological communities, as well as the evolutionary history of ecosystems in the Earth's past. Much effort in theoretical ecology has focused on identifying mechanisms that promote stable coexistence of species at equilibrium. However, in a consumer-resource model of competition along an environmental gradient, high-diversity assemblages have the potential to persist in non-equilibrium states for millions of generations with very little species loss. Species' populations in such competitively accommodated communities show slow drift; if disrupted, they rapidly reorganize into alternative persistent states. Fossil examples of prolonged ecological stability lasting 1-5 Myr punctuated by rapid reorganization (e.g. brachiopods from the Permian Reef of west Texas) suggest that some palaeocommunities represent a record of periodically disrupted transient states rather than stable equilibria. The similarity between the theoretical results reported here and palaeontological data suggests that the maintenance of high-diversity communities, both in the past and present, may reflect long-duration, non-equilibrium transient dynamics. If so, this has implications for the response of such communities to present-day environmental change, as well as for the evolution of lineages in such systems.     

太子河流域河流生态功能评价及其管理策略

在河段尺度下,采用指标评价法对太子河流域的水生生物多样性维持、生境维持、水环境支持和水文支持4项生态功能进行评价,排序求和得到河流的主导功能和综合功能评分. 结果表明：全部河段可评定为4个综合生态功能等级,整体上呈现由山区向平原区递减的趋势. 结合综合生态功能和主导生态功能评价结果,提出了6项河流生态管理策略.其中,对于水生生物多样性维持功能和生境维持功能的河段,管理策略以生态管理为主,即“生态保护”、“生态维持”和“生态修复”;对于水环境支持功能和水文支持功能的河段,管理策略则以开发管理为主,即“限制开发”、“优化开发”和“开发利用”.     

Interactions between almond plantations and native ecosystems: Lessons learned from north‐western Victoria

Five years of research on interrelationships between fauna use of almond plantations and native vegetation in north‐western Victoria shows that almond plantations have a strong influence on fauna dynamics and in some cases may provide important habitat for threatened species.     

Culturally transmitted paternity beliefs and the evolution of human mating behaviour

Recent anthropological findings document how certain lowland South American societies hold beliefs in 'partible paternity', which allow children to have more than one 'biological' father. This contrasts with Western beliefs in 'singular paternity', and biological reality, where children have just one father. Here, mathematical models are used to explore the coevolution of paternity beliefs and the genetic variation underlying human mating behaviour. A gene-culture coevolutionary model found that populations exposed to a range of selection regimes typically converge on one of two simultaneously stable equilibria; one where the population is monogamous and believes in singular paternity, and the other where the population is polygamous and believes in partible paternity. A second agent-based model, with alternative assumptions regarding the formation of mating consortships, broadly replicated this finding in populations with a strongly female-biased sex ratio, consistent with evidence for high adult male mortality in the region. This supports an evolutionary scenario in which ancestral South American populations with differing paternity beliefs were subject to divergent selection on genetically influenced mating behaviour, facilitated by a female-biased sex ratio, leading to the present-day associations of female control, partible paternity and polygamy in some societies, and male control, singular paternity and monogamy in others.     

Morning glory as a powerful model in ecological genomics: tracing adaptation through both natural and artificial selection

Many diverse questions in ecology and evolution have been addressed using species belonging to the genus Ipomoea, commonly referred to as the morning glory genus. Ipomoea exhibits a wide range of diversity in floral color, growth form, mating system and tolerance to environmental factors, both within and among species, and as such has been a focal group of many investigations in the last 80 years. In this review, we highlight recent work to which Ipomoea species have contributed-from studies of the mating system, molecular evolution, plant-herbivore and plant-parasite interactions to their impact on and importance to agriculture. Genomic resources for this group are currently under development, and given the breadth of studies and history of this group, combined with an expanding genetics toolkit, we argue that Ipomoea should provide the next model organism for ecological genomics.     

Ecosystem health through ecological restoration: barriers and opportunities

It is quite possible that no ecosystem on the planet is totally free of anthropogenic effects. Changes in the ozone layer, airborne transport of contaminants, and the persistence of pesticides and other chemicals, coupled with biological magnification, implies that even remote areas are probably not comparable to their condition before the industrial revolution and the recent explosion of human population. Theoretical ecologists have attempted to isolate their theories and studies from anthropogenic effects with varying degrees of success. However, finding ecosystems free of the effects of human society is becoming increasingly difficult, partly because of the global nature of pollution problems. Regrettably, many academicians are not educated in policy development as they work toward B.S., M.S., or Ph.D. degrees in the sciences. As a consequence, scientists are surprised to learn that a politically-appointed individual, experienced in law or some other non-scientific field, usually has final decision-making authority over policy that affects ecosystems. Scientists must understand that policy links science to social, economic, and legal societal values and needs. Finally, aside from the fact that policy or lack thereof now affects all of the planet's ecosystems, policy most likely will also determine which areas of research are funded. While some scientific studies could be carried out with personal funds, these are not particularly common in mainstream science and, therefore, obtaining financial support for ecosystem studies for the remainder of this century and probably early in the next will depend increasingly on societal policy other than purely science policy.     

Exploiting predators for pest management: the need for sound ecological assessment

Most people agree that arthropod natural enemies are good for insect pest management in agriculture. However, the population suppressive effects of predators, which consume their prey and often leave no direct evidence of their activity, are more difficult to study than the effects of parasitoids, which can be sampled from host populations relatively easily. We critically reviewed field studies which investigated the relationship between lepidopteran pests and their associated predatory fauna, published in 11 leading entomology and applied ecology journals between 2003 and 2008. Each study was appraised to determine whether or not it demonstrated that predators had an impact on prey (pest) populations and, if so, whether it was conducted at an ecological scale relevant to pest management. Less than half (43%) of the 54 field studies adopted methodologies that allowed the impact of predators on target pest populations to be measured. Furthermore, 76% of the studies were conducted at the scale of experimental plots rather than at the ecological scale which determines pest and predator population dynamics or at which pest‐management decisions are made. In almost one‐third of the studies, predator abundance and/or diversity was measured, but this metric was not linked with pest suppression or mortality. We conclude that much current research does not provide evidence that predatory arthropods suppress target lepidopteran pest populations and, consequently, that it has little relevance to pest management. Well‐designed ecological experiments combined with recent advances in molecular techniques to identify predator diets and the emergence of organic agriculture provide both the mechanisms and a platform upon which many predator–prey interactions can be investigated at a scale relevant to pest management. However, benefits will only be reaped from this opportunity if current approaches to research are changed and relevant ecological data are collected at appropriate ecological scales.     

A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network

Science has a critical role to play in guiding more sustainable development trajectories. Here, we present the Sustainable Amazon Network (Rede Amazônia Sustentável, RAS): a multidisciplinary research initiative involving more than 30 partner organizations working to assess both social and ecological dimensions of land-use sustainability in eastern Brazilian Amazonia. The research approach adopted by RAS offers three advantages for addressing land-use sustainability problems: (i) the collection of synchronized and co-located ecological and socioeconomic data across broad gradients of past and present human use; (ii) a nested sampling design to aid comparison of ecological and socioeconomic conditions associated with different land uses across local, landscape and regional scales; and (iii) a strong engagement with a wide variety of actors and non-research institutions. Here, we elaborate on these key features, and identify the ways in which RAS can help in highlighting those problems in most urgent need of attention, and in guiding improvements in land-use sustainability in Amazonia and elsewhere in the tropics. We also discuss some of the practical lessons, limitations and realities faced during the development of the RAS initiative so far.     

Interactions between exotic invasive plants and soil microbes in the rhizosphere suggest that 'everything is not everywhere'

BACKGROUND: The study of soil biota in the context of exotic plant invasions has led to an explosion in our understanding of the ecological roles of many different groups of microbes that function in roots or at the root-soil interface. Part of this progress has been the emergence of two biogeographic patterns involving invasive plants and soil microbes. First, in their non-native ranges invasive plants commonly interact differently with the same soil microbes than native plants. Second, in their native ranges, plants that are invasive elsewhere commonly interact functionally with soil microbes differently in their home ranges than they do in their non-native ranges. These studies pose a challenge to a long-held paradigm about microbial biogeography - the idea that microbes are not limited by dispersal and are thus free from the basic taxonomic, biogeographical and evolutionary framework that characterizes all other life on Earth. As an analogy, the global distribution of animals that function as carnivores does not negate the fascinating evolutionary biogeographic patterns of carnivores. Other challenges to this notion come from new measurements of genetic differences among microbes across geographic boundaries, which also suggest that meaningful biogeographic patterns exist for microorganisms. SCOPE AND CONCLUSIONS: We expand this discussion of whether or not 'everything is everywhere' by using the inherently biogeographic context of plant invasions by reviewing the literature on interactions among invasive plants and the microorganisms in the rhizosphere. We find that these interactions can be delineated at multiple scales: from individual plants to continents. Thus the microbes that regulate major aspects of plant biology do not appear to be exempt from the fundamental evolutionary processes of geographical isolation and natural selection. At the important scales of taxonomy, ecotype and ecosystem functions, the fundamental ecology of invaders and soil microbes indicates that everything might not be everywhere.     

Candidate gene microsatellite variation is associated with parasitism in wild bighorn sheep

The loss of genetic variation in host populations is thought to increase host susceptibility to parasites. However, few data exist to test this hypothesis in natural populations. Bighorn sheep (Ovis canadensis) populations occasionally suffer disease-induced population declines, allowing us to test for the associations between reduced genetic variation and parasitism in this species. Here, we show that individual mean heterozygosity for 15 microsatellite loci is associated with lungworm abundance (Protostrongylus spp.) in a small, recently bottlenecked population of bighorn sheep (linear regression, r2=0.339, p=0.007). This association remains significant for seven microsatellites located in genes (p=0.010), but not for eight neutral microsatellites (p=0.306). Furthermore, heterozygotes at three of four microsatellites located within disease-related genes had lower lungworm burdens. This study corroborates theoretical findings that increased parasitism and disease may be a consequence of reduced heterozygosity in wild populations, and that certain individual loci influence parasite resistance. The results illustrate the usefulness of using genomic information, strong candidate genes and non-invasive sampling for monitoring both genetic variation and fitness-related traits, such as parasite resistance, in natural populations.     

Exploring the nature of ecological specialization in a coral reef fish community: morphology,diet and foraging microhabitat use

Patterns of ecological specialization offer invaluable information about ecosystems. Yet, specialization is rarely quantified across several ecological niche axes and variables beyond the link between morphological and dietary specialization have received little attention. Here, we provide a quantitative evaluation of ecological specialization in a coral reef fish assemblage (f. Acanthuridae) along one fundamental and two realized niche axes. Specifically, we examined ecological specialization in 10 surgeonfish species with regards to morphology and two realized niche axes associated with diet and foraging microhabitat utilization using a recently developed multidimensional framework. We then investigated the potential relationships between morphological and behavioural specialization. These relationships differed markedly from the traditional ecomorphological paradigm. While morphological specialization showed no relationship with dietary specialization, it exhibited a strong relationship with foraging microhabitat specialization. However, this relationship was inverted: species with specialized morphologies were microhabitat generalists, whereas generalized morphotypes were microhabitat specialists. Interestingly, this mirrors relationships found in plant–pollinator communities and may also be applicable to other ecosystems, highlighting the potential importance of including niche axes beyond dietary specialization into ecomorphological frameworks. On coral reefs, it appears that morphotypes commonly perceived as most generalized may, in fact, be specialized in exploiting flat and easily accessible microhabitats.     

Patches and pulses as fundamental characteristics for matching ecological and cultural diversity: the Baltic Sea archipelago

Focusing on the Baltic archipelago, we address the questions: to what extent are the rhythms of natural and social systems compatible and under which criteria can we make them coincide? Existing mismatches between resource availability and human demand are identified as well as human attempts to dampen ecosystem fluctuations. By means of examples from forestry and fisheries, we illustrate how changes in property rights and technology have altered the diversity and resilience of the archipelago system. Our results suggest that intermediate scale processes of years up to a century are most critical for bringing natural and cultural systems in concordance. The time frame relevant to management and policy in the archipelago seems to correlate with eutrophication processes and the regrowth of forests. In fisheries, a shift from traditional to recreational fisheries has created fishery patterns badly adapted to the dynamics of the coastal ecosystem in disregard of traditional ecological knowledge. A multipurpose and adaptive management of natural resources is advocated as the most appropriate approach for promoting ecological and cultural diversity in the Baltic archipelago. Existing mismatches between the two have to be addressed by governing institutions at many hierarchical levels.     

Climate change and freshwater ecosystems: impacts across multiple levels of organization

Fresh waters are particularly vulnerable to climate change because (i) many species within these fragmented habitats have limited abilities to disperse as the environment changes; (ii) water temperature and availability are climate-dependent; and (iii) many systems are already exposed to numerous anthropogenic stressors. Most climate change studies to date have focused on individuals or species populations, rather than the higher levels of organization (i.e. communities, food webs, ecosystems). We propose that an understanding of the connections between these different levels, which are all ultimately based on individuals, can help to develop a more coherent theoretical framework based on metabolic scaling, foraging theory and ecological stoichiometry, to predict the ecological consequences of climate change. For instance, individual basal metabolic rate scales with body size (which also constrains food web structure and dynamics) and temperature (which determines many ecosystem processes and key aspects of foraging behaviour). In addition, increasing atmospheric CO₂ is predicted to alter molar CNP ratios of detrital inputs, which could lead to profound shifts in the stoichiometry of elemental fluxes between consumers and resources at the base of the food web. The different components of climate change (e.g. temperature, hydrology and atmospheric composition) not only affect multiple levels of biological organization, but they may also interact with the many other stressors to which fresh waters are exposed, and future research needs to address these potentially important synergies.