On the northernmost distribution of leaf beetles of the genus <Emphasis Type="Italic">Oreomela</Emphasis> (Coleoptera,Chrysomelidae): New species from mountains of southern Siberia

Three new species of leaf beetles are described: Oreomela dudkorum sp. n. (Terektinskii Ridge, Central Altai Mountains), O. tuvensis sp. n. (mountains of southeastern Republic of Tuva), and O. romantsovi sp. n. (Western Sayan Mountains). The representatives of this genus, and especially of the nominotypical subgenus, were found in Russia and in the territories mentioned for the first time. Thus, the distribution boundary of this genus is shifted 3–4° northwards. The representatives of Oreomela have most probably migrated from Tien Shan to the mountains of southern Siberia via the Mongolian Altai Mountains.     

Development of early human culture in northern Asia

An archeological complex in the Pleistocene deposits of the Altai Mountains currently provides the most complete information about early human occupation in northern and Central Asia. It is best represented in studies of multilayered Paleolithic sites in the Anui River valley in the northwestern part of the Altai Mountains. The general stratigraphic profile, which includes Middle and Upper Pleistocene deposits, has been defined based on the data obtained from a number of sites in this region. Available information reflects the development of early human culture and environmental fluctuations from the early to the late stages of the Paleolithic.     

Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations

Background

The extant roe deer (Capreolus Gray, 1821) includes two species: the European roe deer (C. capreolus) and the Siberian roe deer (C. pygargus) that are distinguished by morphological and karyotypical differences. The Siberian roe deer occupies a vast area of Asia and is considerably less studied than the European roe deer. Modern systematics of the Siberian roe deer remain controversial with 4 morphological subspecies. Roe deer fossilized bones are quite abundant in Denisova cave (Altai Mountains, South Siberia), where dozens of both extant and extinct mammalian species from modern Holocene to Middle Pleistocene have been retrieved.

Methodology/Principal Findings

We analyzed a 629 bp fragment of the mitochondrial control region from ancient bones of 10 Holocene and four Pleistocene Siberian roe deer from Denisova cave as well as 37 modern specimen belonging to populations from Altai, Tian Shan (Kyrgyzstan), Yakutia, Novosibirsk region and the Russian Far East. Genealogical reconstructions indicated that most Holocene haplotypes were probably ancestral for modern roe deer populations of Western Siberia and Tian Shan. One of the Pleistocene haplotypes was possibly ancestral for modern Yakutian populations, and two extinct Pleistocene haplotypes were close to modern roe deer from Tian Shan and Yakutia. Most modern geographical populations (except for West Siberian Plains) are heterogeneous and there is some tentative evidence for structure. However, we did not find any distinct phylogenetic signal characterizing particular subspecies in either modern or ancient samples.

Conclusion/Significance

Analysis of mitochondrial DNA from both ancient and modern samples of Siberian roe deer shed new light on understanding the evolutionary history of roe deer. Our data indicate that during the last 50,000 years multiple replacements of populations of the Siberian roe deer took place in the Altai Mountains correlating with climatic changes. The Siberian roe deer represent a complex and heterogeneous species with high migration rates and without evident subspecies structure. Low genetic diversity of the West Siberian Plain population indicates a recent bottleneck or founder effect.     

Occurrence of Paramecium species in Western Siberia, Russia

Paramecium strains collected in Central Russia, Western Siberia (the West Siberian Lowland and the Altai Mountains in the south) were studied. The presence of P. caudatum, P. bursaria, P. multimicronucleatum, P. polycaryum, and four species of the P. aurelia complex, i.e. P. primaurelia (in Omsk), P. biaurelia (in Krasnoyarsk and the Altai Mountains), P. triaurelia (in Krasnoyarsk), and P. pentaurelia (in Novosibirsk, Altai Foreland, and Altai Mountains) was revealed. P. triaurelia and P. pentaurelia were found for the first time in Asia.     

The influence of late pleistocene mountain glaciations on the genetic differentiation of long-tailed ground squirrel (<Emphasis Type="Italic">Urocitellus undulatus</Emphasis>)

Long-tailed ground squirrel (Urocitellus undulatus) is a polytypic species with a wide distribution from the Tien Shan to the Amur River region. Previously, considerable genetic differentiation between eastern and western populations of this species was demonstrated. Moreover, the greatest differences were observed in the western part of the range located in Central Asia, the region that was subjected to repeated glaciations in the past and represents one of the centers of the ground squirrel secondary diversification. The analysis of polymorphism of the mitochondrial DNA control region was carried out on long-tailed ground squirrels living in the northern part of Central Asia, on the territory of the Altai Mountains (45 individuals from 23 localities). The presence of two genetically differentiated (7.7% differences) and geographically separated lineages (western and eastern) was revealed. The data obtained disprove the hypothesis on unidirectional, from west to east, colonization of the Altai Mountains after the end of the last glacial maximum and show the two pathways of the ground squirrel colonization of the Altai, from both western and eastern refugia.     

The impact of Pleistocene climate change on an ancient arctic-alpine plant: multiple lineages of disparate history in Oxyria digyna

The ranges of arctic-alpine species have shifted extensively with Pleistocene climate changes and glaciations. Using sequence data from the trnH-psbA and trnT-trnL chloroplast DNA spacer regions, we investigated the phylogeography of the widespread, ancient (>3 million years) arctic-alpine plant Oxyria digyna (Polygonaceae). We identified 45 haplotypes and six highly divergent major lineages; estimated ages of these lineages (time to most recent common ancestor, T(MRCA)) ranged from ～0.5 to 2.5 million years. One lineage is widespread in the arctic, a second is restricted to the southern Rocky Mountains of the western United States, and a third was found only in the Himalayan and Altai regions of Asia. Three other lineages are widespread in western North America, where they overlap extensively. The high genetic diversity and the presence of divergent major cpDNA lineages within Oxyria digyna reflect its age and suggest that it was widespread during much of its history. The distributions of individual lineages indicate repeated spread of Oxyria digyna through North America over multiple glacial cycles. During the Last Glacial Maximum it persisted in multiple refugia in western North America, including Beringia, south of the continental ice, and within the northern limits of the Cordilleran ice sheet. Our data contribute to a growing body of evidence that arctic-alpine species have migrated from different source regions over multiple glacial cycles and that cryptic refugia contributed to persistence through the Last Glacial Maximum.     

The central Siberian origin for native American Y chromosomes.

Y chromosomal DNA polymorphisms were used to investigate Pleistocene male migrations to the American continent. In a worldwide sample of 306 men, we obtained 32 haplotypes constructed with the variation found in 30 distinct polymorphic sites. The major Y haplotype present in most Native Americans was traced back to recent ancestors common with Siberians, namely, the Kets and Altaians from the Yenissey River Basin and Altai Mountains, respectively. Going further back, the next common ancestor gave rise also to Caucasoid Y chromosomes, probably from the central Eurasian region. This study, therefore, suggests a predominantly central Siberian origin for Native American paternal lineages for those who could have migrated to the Americas during the Upper Pleistocene.     

The Compositae of Xizang (Tibet)

1) The Compositae in Tibet so far known comprise 508 species and 88 genera, which nearly amounts to one fourth of the total number of genera and one third of the total number of species of Compositae in all China, if the number of 2290 species and 220 genera have respectively been counted in all China. In Tibet there are all tribes of Compositae known in China, and surprisingly, the large tribes in Tibetan Compositae are also large ones in all China and the small tribes in Tibet are also small ones in all China. Generally speaking, the large genera in Tibet are also large ones in all China and the small genera in Tibet are likewise small ones in all China. In this sense it is reasonable to say that the Compositae flora of Tibet is an epitome of the Compositae flora of all China. In the Compositae flora of Tibet, there are only 5 large genera each containing 30 species or more. They are Aster, Artemisia, Senecio, Saussurea and Cremanthodium. And 5 genera each containing 10—29 species. They are Erigeron, Anaphalis, Leontopodium, Ajania, Ligularia and Taraxacum. In addition, there are 77 small genera, namely 87% of the total of Compositae genera in Tibet, each comprising 1—9 species, such as Aja-niopsis, Cavea and Vernonia, etc. 2) The constituents of Compositae flora in Tibet is very closely related to those of Sichuan-Yunnan provinces with 59 genera and 250 species in common. Such a situation is evidently brought about by the geographycal proximity in which the Hengtuang Shan Range links southeastern and eastern Tibet with northern and northwestern SichuanYnnnan. With India the Tibetan Compositae have 59 genera and 132 species in common, also showing close floristic relationships between the two regions. Apparently the floristic exchange of Compositae between Tibet and India is realized by way of the mountain range of the Himalayas. The mountain range of the Himalayas, including the parallel ranges, plays a important role as a bridge hereby some members of the Compositae of western or northern Central Asia and of the northern Africa or of western Asia have migrated eastwards or southeastwards as far as the southern part of Fibet and northern part of India, or hereby some Compositae plants of eastern and southeastern Asia or Asia Media have migrated northwestwards as the northern part of Central Asia. Some of the species and genera in common to both Tibet and Sinjiang indicate that this weak floristical relationship between these regions is principally realized through two migration routes: one migration route is by way of the Himalayas including the parallel ranges to Pamir Plataeu and Tien Shan, or vice versa. The other migration route is by way of northern Sinjiang to Mongolia, eastern Inner Mongolia, southwards to Gansu, Qinghai (or western Sichuan), eastern Tibet up to the Himalayas, or vice versa. However, Tibet is not entirely situated at a migration crossroad of the floral elements. An ample amount of the data shows that Compositae flora have a particular capability of development in Tibet. of the total number of species of Tibetan Compositae, 102 species and 1 genus (Ajaniopsis Shih) are endemic. Besides, 8 genera are regional endemics with their range extending to its neighbourhood. The higher percentage of endemics at specific level than at generic in Tibetan Compositae may be a result of active speciation in response to the new enviromental conditions created by the uplifting of the Himalayas. The flora in Tibetan Plateau as a whole appears to be of a younger age. 3) The uprising of the Himalayas and of the Tibetan Plateau accompanied by the ultraviolet ray radiation, the microthermal climate and the high wind pressure has, no doubt, played a profound influence upon the speciation of the native elements of Tibetan Compositae. The recent speciation is the main trend in the development of the Com-positae flora native in Tibet in the wake of upheaval of the plateau.     

Different timing of the adaptive radiations of North American and Asian warblers

The timing of speciation events among warblers (small insectivorous woodland birds) in the Himalayas of India and in the White Mountains of New Hampshire, USA, is compared. Sequence divergence in the mitochondrial cytochrome b gene for 13 New World species in six genera averages 2.6%, which according to standard calibrations places most of the diversification in the early Pleistocene. In contrast, eight Himalayan species in the single genus Phylloscopus differ by an average of 10.7% in the same gene sequence. The New Hampshire warblers appear to have undergone a relatively recent burst of speciation and morphological evolution, but there is a detectable slowing of speciation rates (or increase in extinction rates) within the community towards the present. Other North American passerine groups that have been studied show no signs of explosive diversification in the Pleistocene. In these groups, pairs of sister species are often older than the entire warbler radiation. Boreal forest migrated south from very high latitudes towards the end of the Pliocene and this apparently created conditions ripe for explosive diversification among the warblers, but not for many other groups.     

黄耆属簇毛黄耆亚属生物地理学研究

簇毛黄耆亚属的种类主要沿亚洲的“山链”分布,即横断山,喜马拉雅,查谟和克什米尔,帕米尔—阿赖,兴都库什和苏莱曼山脉,表达了东亚、西亚和中亚的植物区系地理关系。本文基于亚属的分布式样,对其8个分布区进行了分析生物地理学中的成分分析。结果表明,这8个分布区可划分为4类,即1)华北—东北;2)横断山和西藏;3)西喜马拉雅,西巴基斯坦,塔吉克斯坦;4)内蒙古—新疆。在本亚属的分布式样中,有两个地理“结点”,即横断山和西喜马拉雅,后者主要指克什米尔。推断地理上的衍进方向是由东向西发展,喜马拉雅是连接东西分布的通道。     

The dynamics of bioresources and activity of the paleolithic man, using the example of northwestern Altai Mountains

Long-term studies of living and fossil mammals of the Altai Mountains (= Gornyi Altai) revealed the pattern of the dynamics of small mammal communities in this region in the second half of the Pleistocene, in the Holocene, and the present time. The fossil fauna of the Anui River valley differs significantly from the modern one. The Pleistocene fauna of Paleolithic sites reflects a considerably more diverse biotopic situation and high landscape diversity compared with the present time. This diversity depended on a stronger role in the communities of steppe and highland elements. The influence of Paleolithic man on Late Pleistocene populations of ungulates and large predators is detected.     

Phylogeography of a widespread terrestrial vertebrate in a barely-studied Palearctic region: green toads (<Emphasis Type="Italic">Bufo viridis</Emphasis> subgroup) indicate glacial refugia in Eastern Central Asia

The phylogeography of western Palearctic species is relatively well studied, but data on Eastern Central Asia are scarce. We present one of the first data sets from a widespread terrestrial vertebrate (Bufo pewzowi) inhabiting Eastern Central Asian mountains and deserts to gain knowledge on its phylogeography in this region. We applied combined phylogenetic and demographic analyses to understand the evolutionary history using mitochondrial DNA D-loop variation of toads from 37 locations. Genetic structure of Bufo pewzowi is strongly affected by landscape: we found three haplotype groups in eastern Kazakhstan, Dzungaria and Tarim Basin, divided by the Tian Shan and Dzungarian Alatau ranges. A vicariant hypothesis may explain divergence among groups. The divergence time of the three major clades was estimated about 0.9 million years ago (confidence interval 0.5–1.4), and is discussed with respect to Quaternary uplifting and glaciation in the Tian Shan. Demographic analyses provided evidence for both historical bottlenecks and population expansions and suggested Pleistocene signatures. Glacial refugia were inferred in the Tarim Basin (around the Turpan depression), in southern Dzungaria (Urumqui region), at the northern foot of the Tian Shan (Gongnaisi) and perhaps at the Altai range (Terekti). Regional Post-Last Glacial Maximum dispersal patterns are proposed. A taxonomic hypothesis is presented. This study provides a detailed history of how a widespread terrestrial vertebrate responded to geological change and Quaternary glacial events in Eastern Central Asia and may have significance for future phylogeographic research in this understudied region.     

The dynamics of the composition of mtDNA haplotypes of the ancient population of the Altai Mountains from the early bronze age (3rd millennium BC) to the iron age (2nd–1st centuries BC)

The mtDNA polymorphism in representatives of various archaeological cultures of the Developed Bronze Age, Early Scythian, and Hunnish-Sarmatian periods was analyzed (N = 34). It detected the dominance of Western-Eurasian haplotypes (70.6%) in mtDNA samples from the representatives of the ancient population of the Early Bronze Age–Iron Age on the territory of Altai Mountains. Since the 8th to the 7th centuries BC, a sharp increase was revealed in the Eastern Eurasian haplogroups A, D, C, and Z (43.75%) as compared to previous cultures (16.7%). The presence of haplotype 223-242-290-319 of haplogroup A8 in Dolgans, Itelmens, Evens, Koryaks, and Yakuts indicates the possible long-term presence of its carriers in areas inhabited by these populations. The prevalence of western Eurasian haplotypes is observed not only in the Altai Mountains but also in Central Asia (Kazakhstan) and the south of the Krasnoyarsk Krai. All of the three studied samples from the Western Eurasian haplogroups were revealed to contain U, H, T, and HV. The ubiquitous presence of haplotypes of haplogroup H and some haplogroups of cluster U (U5a1, U4, U2e, and K) in the vast territory from the Yenisei River basin to the Atlantic Ocean may indicate the direction of human settlement, which most likely occurred in the Paleolithic Period from Central Asia.     

Refugial ecosystems in central Asia as indicators of biodiversity change during the Pleistocene–Holocene transition

Site-scale species richness (alpha diversity) patterns are well described for many present-day ecosystems, but they are difficult to reconstruct from the fossil record. Very little is thus known about these patterns in Pleistocene full-glacial landscapes and their changes following Holocene climatic amelioration. However, present-day central Asian ecosystems with climatic features and biota similar to those of the full-glacial periods may serve as proxies of alpha diversity variation through both space and time during these periods. We measured alpha diversity of vascular plants, bryophytes, macrolichens and land snails, as well as environmental variables, in 100-m² plots located in forests and open habitats in the Russian Altai Mountains and their northern foothills. This region contains adjacent areas that possess climatic and biotic features similar to mid-latitude Europe for both the Last Glacial Maximum and contemporaneous Holocene ecosystems. We related alpha diversity to environmental variables using generalized linear models and mapped it from the best-fit models. Climate was identified as the strongest predictor of alpha diversity across all taxa, with temperature being positively correlated to number of species of vascular plants and land snails and negatively correlated to that of bryophytes and macrolichens. Factors important for only some taxa included precipitation, soil pH, percentage cover of tree layer and proportion of grassland areas in the landscape around plots. These results, combined with the high degree of similarity between the current Altai biota and dry-cold Pleistocene ecosystems of Europe and northern Asia, suggest that vascular plant and land snail alpha diversity was low during cold phases of the Pleistocene with a general increase following the Holocene climatic amelioration. The opposite trend probably existed for terricolous bryophytes and macrolichens.     

嵩草属地理分布的研究

嵩草属Kobresia Willd.隶属于莎草科,全世界有64种5变种,中国有49种4变种,属下分为4个组。该属主要分布于北半球温带至寒带,亚洲种类最多,主要集中分布于喜马拉雅山地区和横断山地区。上述两地共有总数的90％以上的种类。因此,喜马拉雅-横断山地区为嵩草属的分布中心。与嵩草属最近缘的属Schoenoxiphium只分布在马达加斯加和非洲东南部山地。两个属可能有共同的祖先,发生于冈瓦纳古陆。随着印度板块与非洲大陆分离并向北方漂移,嵩草属的祖先被带到欧亚大陆,在两个板块相遇处——喜马拉雅-横断山地区产生了现在的嵩草属。其后,喜马拉雅山脉进一步抬升,气候与环境发生巨变,嵩草属也进一步分化形成现在的规模。印度板块在早第三纪与欧亚大陆相连接,嵩草属可能就是此时起源于喜马拉雅山地区,并开始分化,且沿北半球的山系向北扩散到欧洲和西伯利亚,又从欧洲到格陵兰再到加拿大东部,从西伯利亚通过白令海峡到阿拉斯加并沿落基山脉南下达到美国的科罗拉多,形成了嵩草属现今的分布格局。     

Molecular phylogeny of Solms-laubachia (Brassicaceae) s.l., based on multiple nuclear and plastid DNA sequences, and its biogeographic implications

The Hengduan Mountains region of south-west China is a noted biodiversity,hotspot, but the geographic origins and historical assembly of its rich endemic flora, including the sky-island species of Solms-laubachia Muschl. (Brassicaceae), have been little studied. Previous molecular studies on the phylogeny of Solms-laubachia showed it to be paraphyletic, leading to considerable expansion not only of its taxonomic limits, but also its geographic range, with the inclusion of taxa from outside the Hengduan region. However, these studies provided little resolution of interspecific relationships, preventing inferences about historical biogeography within the clade. In the present study, new sequence data from two nuclear genes (LEAFY and G3pdh) and two chloroplast intergenic spacers (petN-psbM and psbM-trnD) were combined with existing markers to increase phylogenetic signals. Phaeonychium villosum (Maxim.) Al-Shehbaz was found to be nested within Solms-laubachia s.l. In general, phylogenetic relationships appear to be a good predictor of geography, with the Hengduan Mountain endemics embedded in a paraphyletic grade of species from the western Himalayas and central Asia, but they also imply morphological homoplasy. Incongruence was detected between the nuclear and chloroplast gene trees, perhaps resulting from incomplete lineage sorting of ancestral polymorphisms. The crown age of Solms-laubachia s.l. was estimated to be approximately 1.42-3.68 mya, using Bayesian relaxed molecular clock analysis. Historical biogeographic analysis using a parametric dispersal-extinction-cladogenesis model inferred central Asia and the western Himalayas as most probable ancestral range of Solms-laubachia s.l., and estimated higher rates of eastward expansion than westward during the diversification of descendant lineages. In summary, our results suggest that Solms-laubachia s.l. originated during the Pliocene in central Asia, and subsequently migrated eastward into the Hengduan Mountains, colonizing sky-island, alpine scree-slope habitats that may have provided novel ecological opportunity and accelerated speciation, ultimately establishing this region as the present center of diversity of the genus.     

中国阿勒泰地区鸟类物种编目、丰富度格局和区系组成

中国阿勒泰地区位于新疆北部, 与哈萨克斯坦、俄罗斯、蒙古国交界, 该区包含阿尔泰山及山前荒漠和绿洲, 属于全球200个生物多样性最丰富和最具代表性生态区之一的阿尔泰-萨彦岭生物热点地区。阿勒泰地区生境多样, 鸟类物种资源丰富。尽管以往曾在阿勒泰地区进行过一些鸟类调查, 但对于该地区不同景观和生境类型中鸟类物种丰富度和分布尚无详尽报道。本文通过2013-2016年在中国境内阿尔泰山及山前平原地区对不同生境类型中的鸟类进行实地调查, 并总结文献资料及观鸟爱好者的记录数据, 重新整理了阿勒泰地区鸟类名录及地理分布, 分析了鸟类的物种组成、区系成分; 通过鸟类分布位点数据, 选取气候、土地覆被类型、人类足迹指数及地形共4类环境因子作为自变量建立MaxEnt生态位模型, 通过模拟77种鸟类的适宜分布区并叠加分布图层, 获得了阿勒泰地区的鸟类物种丰富度分布格局。结果表明: 阿勒泰共记录鸟类344种, 隶属19目55科149属, 其中雀形目163种。在垂直海拔带上, 鸟类物种数分别为高山裸岩带24种, 高山草甸带35种, 山地森林草原带172种, 低山灌木带130种, 荒漠草原带84种, 平原绿洲带173种, 以及各海拔带的湿地与水域生境中水鸟92种; 在区系成分上, 以北方型鸟类为主(170种, 占49.4%), 其次为广布种(93种, 占27.0%)。阿尔泰山地的鸟类区系呈现出西伯利亚动物区系特征, 山前平原地区呈现蒙新区分布特征, 因此, 阿勒泰地区动物地理区系属于古北界欧洲-西伯利亚亚界阿尔泰-萨彦岭区阿尔泰亚区; 山前平原地区属于古北界中亚亚界蒙新区西部荒漠亚区。MaxEnt模型推测阿勒泰地区山前平原绿洲地区、山地森林草原带和低山灌木带具有较高的鸟类物种丰富度, 尤其是额尔齐斯河流域下游的绿洲带宽阔, 鸟类物种丰富, 而高山区和荒漠生境中鸟类物种相对较少。模型预测的结果与实际调查情况相符。阿勒泰地区应采用生态友好的经济发展策略, 加强对乔木和灌木的保护, 这有助于维持较高的鸟类物种多样性。此外, 降低生境破碎化不仅对该地区物种保护有重要作用, 也对维持阿尔泰-萨彦岭生物热点地区的山地鸟类多样性有重要意义。     

Tracing the Origin of the East-West Population Admixture in the Altai Region (Central Asia)

A recent discovery of Iron Age burials (Pazyryk culture) in the Altai Mountains of Mongolia may shed light on the mode and tempo of the generation of the current genetic east-west population admixture in Central Asia. Studies on ancient mitochondrial DNA of this region suggest that the Altai Mountains played the role of a geographical barrier between West and East Eurasian lineages until the beginning of the Iron Age. After the 7th century BC, coinciding with Scythian expansion across the Eurasian steppes, a gradual influx of East Eurasian sequences in Western steppes is detected. However, the underlying events behind the genetic admixture in Altai during the Iron Age are still unresolved: 1) whether it was a result of migratory events (eastward firstly, westward secondly), or 2) whether it was a result of a local demographic expansion in a ‘contact zone’ between European and East Asian people. In the present work, we analyzed the mitochondrial DNA lineages in human remains from Bronze and Iron Age burials of Mongolian Altai. Here we present support to the hypothesis that the gene pool of Iron Age inhabitants of Mongolian Altai was similar to that of western Iron Age Altaians (Russia and Kazakhstan). Thus, this people not only shared the same culture (Pazyryk), but also shared the same genetic east-west population admixture. In turn, Pazyryks appear to have a similar gene pool that current Altaians. Our results further show that Iron Age Altaians displayed mitochondrial lineages already present around Altai region before the Iron Age. This would provide support for a demographic expansion of local people of Altai instead of westward or eastward migratory events, as the demographic event behind the high population genetic admixture and diversity in Central Asia.     

Molecular phylogeny of Solms‐laubachia (Brassicaceae) s.l., based on multiple nuclear and plastid DNA sequences,and its biogeographic implications

Abstract The Hengduan Mountains region of south‐west China is a noted biodiversity hotspot, but the geographic origins and historical assembly of its rich endemic flora, including the sky‐island species of Solms‐laubachia Muschl. (Brassicaceae), have been little studied. Previous molecular studies on the phylogeny of Solms‐laubachia showed it to be paraphyletic, leading to considerable expansion not only of its taxonomic limits, but also its geographic range, with the inclusion of taxa from outside the Hengduan region. However, these studies provided little resolution of interspecific relationships, preventing inferences about historical biogeography within the clade. In the present study, new sequence data from two nuclear genes (LEAFY and G3pdh) and two chloroplast intergenic spacers (petN–psbM and psbM–trnD) were combined with existing markers to increase phylogenetic signals. Phaeonychium villosum (Maxim.) Al‐Shehbaz was found to be nested within Solms‐laubachia s.l. In general, phylogenetic relationships appear to be a good predictor of geography, with the Hengduan Mountain endemics embedded in a paraphyletic grade of species from the western Himalayas and central Asia, but they also imply morphological homoplasy. Incongruence was detected between the nuclear and chloroplast gene trees, perhaps resulting from incomplete lineage sorting of ancestral polymorphisms. The crown age of Solms‐laubachia s.l. was estimated to be approximately 1.42–3.68 mya, using Bayesian relaxed molecular clock analysis. Historical biogeographic analysis using a parametric dispersal–extinction–cladogenesis model inferred central Asia and the western Himalayas as most probable ancestral range of Solms‐laubachia s.l., and estimated higher rates of eastward expansion than westward during the diversification of descendant lineages. In summary, our results suggest that Solms‐laubachia s.l. originated during the Pliocene in central Asia, and subsequently migrated eastward into the Hengduan Mountains, colonizing sky‐island, alpine scree‐slope habitats that may have provided novel ecological opportunity and accelerated speciation, ultimately establishing this region as the present center of diversity of the genus.     

Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes)

Aim Zoogeographic patterns in the Himalayas and their neighbouring Southeast Asian mountain ranges include elevational parapatry and ecological segregation, particularly among passerine bird species. We estimate timings of lineage splits among close relatives from the north Palaearctic, the Sino‐Himalayan mountain forests and from adjacent Southeast Asia. We also compare phylogeographic affinities and timing of radiation among members of avian communities from different elevational belts. Location East Asia. Methods We reconstructed molecular phylogenies based on a mitochondrial marker (cytochrome b) and multilocus data sets for seven passerine groups: Aegithalidae, Certhiidae (Certhia), Fringillidae (Pyrrhula), Paridae (Periparus), Phylloscopidae, Regulidae and Timaliidae (Garrulax sensu lato). Molecular dating was carried out using a Bayesian approach applying a relaxed clock in beast . Time estimates were inferred from three independent calibrations based on either a fixed mean substitution rate or fixed node ages. The biogeographic history of each group was reconstructed using a parsimony‐based approach. Results Passerine radiation in Southeast Asia can be divided into roughly three major phases of separation events. We infer that an initial Miocene radiation within the Southeast Asian region included invasions of (sub)tropical faunal elements from the Indo‐Burmese region to the Himalayan foothills and further successive invasions to Central Asia and Taiwan towards the early Pliocene. During two further Pliocene/Pleistocene phases, the subalpine mountain belt of the Sino‐Himalayas was initially invaded by boreal species with clear phylogenetic affinities to the north Palaearctic taiga belt. Most terminal splits between boreal Himalayan/Chinese sister taxa were dated to the Pleistocene. Main conclusions Extant patterns of elevational parapatry and faunal transition in the Sino‐Himalayas originated from successive invasions from different climatic regions. The initiation of Southeast Asian passerine diversification and colonization of the Himalayan foothills in the mid‐Miocene coincides with the postulated onset of Asian monsoon climate and the resulting floral and faunal turnovers. Patterns of elevational parapatry were established by southward invasions of boreal avifaunal elements to the subalpine Sino‐Himalayan forest belt that were strongly connected to climate cooling towards the end of the Pliocene. Current patterns of allopatry and parapatry in boreal species (groups) were shaped through Pleistocene forest fragmentation in East Asia.