Genetic diversity and population structure of the Black-faced Spoonbill (Platalea minor) among its breeding sites in South Korea: Implication for conservation

The endangered Black-faced Spoonbill Platalea minor has experienced drastic reductions in population size, geographic distribution, and habitat availability throughout East Asia. In the present study, we examined population genetic structure and genetic diversity of Black-faced Spoonbills inhabiting five sites off the west coast of South Korea encompassing a few of its major breeding sites. Ten microsatellite loci and the mitochondrial sequence were used to assess patterns of genetic variation based on 63 individuals. Three ND2 haplotypes were found among 61 individuals; the remaining two were identified as Eurasian Spoonbills, revealing an unexpected hybridization between these two species having different ecological niches in South Korea—the Eurasian Spoonbill overwinters in inland areas, whereas the Black-faced Spoonbill inhabits coastal areas during the summer. Analyses of microsatellite variation revealed no discrete population structure among the five breeding sites but very weak genetic differentiation among geographically distant regions. Assignment tests identified several possible migrants among sites. Our findings suggested that Black-faced Spoonbills from the five breeding sites could be managed as a single population and highlighted the importance of conserving the populations from Maedo, Suhaam, and Namdong reservoir, which are geographically close and have retained high levels of genetic diversity and large populations.     

Geographic variation in salt marsh structure and function

We examined geographic variation in the structure and function of salt marsh communities along the Atlantic and Gulf coasts of the United States. Focusing on the arthropod community in the dominant salt marsh plant Spartina alterniflora, we tested two hypotheses: first, that marsh community structure varies geographically, and second, that two aspects of marsh function (response to eutrophication and addition of dead plant material) also vary geographically. We worked at eleven sites on the Gulf Coast and eleven sites on the Atlantic Coast, dividing each coast up into two geographic areas. Abiotic conditions (tidal range, soil organic content, and water content, but not soil salinity), plant variables (Spartina nitrogen content, height, cover of dead plant material, but not live Spartina percent cover or light interception), and arthropod variables (proportional abundances of predators, sucking herbivores, stem-boring herbivores, parasitoids, and detritivores, but not total arthropod numbers) varied among the four geographic regions. Latitude and mean tidal range explained much of this geographic variation. Nutrient enrichment increased all arthropod functional groups in the community, consistent with previous experimental results, and had similar effects in all geographic regions, contrary to our hypothesis, suggesting widespread consistency in this aspect of ecosystem function. The addition of dead plant material had surprisingly little effect on the arthropod community. Our results caution against the uncritical extrapolation of work done in one geographic region to another, but indicate that some aspects of marsh function may operate in similar ways in different geographic regions, despite spatial variation in community structure.     

Leaf anatomy of Carex humilis does not correlate with orographic,geological and bioclimatic habitat conditions in C&SE Europe

This paper presents the results of a multivariate morphometric study of leaf anatomical characters in different, geographically very distant populations of taxon Carex humilis from Hungary, Romania, Serbia, Bosnia & Herzegovina, Montenegro and Albania with the aim to reveal the trends of population differentiation. Analyses were performed on the cross-section of 173 leaves collected from 12 populations. In order to establish the overall morphological variation and relationships between individuals from all populations, principal component analyses (PCA) and canonical discriminant analysis (CDA) have been done. The UPGMA clustering analyses based on leaf anatomical characters and habitat climatic characteristics were carried out to explore whether the observed anatomical differences are a result of adaptive responses. Regression analysis (linear regression) was performed to identify the level of correlation between leaf anatomical characters and basic orographic, geological, and bioclimatic habitat characteristics. Quite unexpectedly, most of observed groups are formed of geographically very distant populations which are living in extremely different climatic and geological conditions, indicating that general anatomical differentiation in Carex humilis in C&SE Europe cannot be explained by the environmental impacts, and basically do not represent an adaptive response to different climatic or geological condition.     

Systematics and evolution of the Disa draconis complex (Orchidaceae)

The systematic status of Disa draconis (L.f.) Sw. is revised following extensive field studies of population variation in the Western Cape, South Africa. Principal component and cluster analyses revealed clear distinctions between populations from sandplain, semi-arid and montane environments. Diagnostic characters were found in each of the population clusters indicating the existence of a species complex, rather than a single taxon as in the current taxonomy. We propose, therefore, that the name D. draconis (L.f.) Sw. be restricted to the individuals of the sandplain populations from which the type was collected. We reinstate an earlier name, Disa harveiana Lindl., to describe the montane populations which possess several autapomorphic characters. We also show that the geographical variation in spur length and flowering time within this species can be partitioned into two geographically distinct subspecies: D. harveiana subsp. harveiana and D. harveiana subsp. longicalcarata Johnson & Linder. The populations from the semi-arid Karoo region were recognized as a distinct new species, Disa karooica Johnson & Linder, on the basis of their peculiar petal structure. A cladistic analysis indicated that the three species forming the D. draconis complex form a monophyletic and relatively specialized lineage within Disa sect. Coryphaea. The revised classification also has important conservation implications as D. draconis , previously considered a common species, is now restricted to a few highly threatened populations on the west coast near Cape Town.     

Metazoan parasite diversity of the endemic South African intertidal klipfish,Clinus superciliosus: Factors influencing parasite community composition

The current trend in marine parasitology research, particularly in South Africa, is to focus on a specific parasite taxon and not on the total parasite community of a specific fish host. However, these records do not always reveal the ecological role of parasites in ecosystems. Thus, the present study aimed to determine which factors influence the parasite community composition of the endemic southern African intertidal klipfish, Clinus superciliosus (n = 75). Metazoan parasites were sampled from four localities (two commercial harbours - west coast; and two relatively pristine localities - southeast coast) along the South African coast. A total of 75 klipfish were examined for parasites, where 30 distinct taxa, representing seven taxonomic groups were found: Acanthocephala (4 taxa), Cestoda (2 taxa), Crustacea (5 taxa), Digenea (11 taxa), Hirudinea (2 taxa), Monogenea (1 taxon) and Nematoda (5 taxa). Results indicated that the main driver of diversity was locality, with the highest diversity on the southeast coast, most likely due to higher water temperatures and upwelling compared to the west coast. The parasite community composition of the klipfish was significantly influenced by water temperature and parasite life cycle. These results emphasise the importance of parasitological surveys including all parasite taxa in hosts from multiple localities and seasons, to better comprehend their ecological role.     

海南岛西海岸红树林软体动物多样性

为了掌握海南岛西海岸红树林软体动物多样性状况, 本文于2015-2016年对海南岛西海岸6个主要红树林分布区软体动物的种类组成、物种多样性和群落结构的时空变化进行了研究。共采集到软体动物57科201种, 主要优势种有珠带拟蟹守螺(Cerithidea cingulata)、绯拟沼螺(Assiminea latericea)、圆胖樱蛤(Pinguitellina cycladiformis)和斜肋齿蜷(Sermyla riqueti)等。年平均密度与平均生物量分别为324.13 ind./m²和142.88 g/m², 物种数、密度和生物量均高于北部湾沿岸的其他红树林。海南岛西海岸各红树林软体动物的密度和生物量均未呈现明显的季节变化, 软体动物密度存在空间上的显著差异。聚类分析结果显示, 在盐度、土壤结构和红树林群落存在差异的不同红树林, 软体动物种类组成相似度低。多因子AZTI海洋生物指数(M-AMBI)结果表明海南岛西海岸红树林软体动物群落未受明显扰动, 生态环境质量介于一般和优良之间, 但仍受到人类活动与外来植物入侵威胁, 因其在候鸟迁徙中的重要作用, 亟需加强管理与保护。     

Colour polymorphism in common primrose (Primula vulgaris Huds.): many colours–many species?

Primula vulgaris exhibits flower colour polymorphism in the eastern part of its range, especially pronounced on the NE coast of the Black Sea. This polymorphism in the Caucasian populations has been taxonomically described and some segregated species are listed as rare and endangered. We used sequence variation in two chloroplast noncoding regions (trnL–trnF and rpll32–trnL) and the complete nuclear internal transcribed spacer (ITS) of ribosomal DNA region to investigate correspondence between flower colour and geographical distribution of both nuclear and chloroplast haplotypes. It appears that variability in these DNA regions does not correlate with flower colour, being, however, clearly structured geographically. We used nested clade analysis to explore this geographical structure. It seems that the territory of the Colchis refugium on the E coast of the Black Sea contains both the highest flower colour and haplotype diversities. The results suggest that common primroses colonized the NE coast of the Black Sea from this refugium, spreading along the coast westward. At the same time, the analysis of ITS haplotypes indicates that P. vulgaris colonized the Crimea from NW Anatolia. This makes it clear that no segregated species can be recognized within flower colour polymorphic P. vulgaris in the Caucasus region. However, its phylogeography needs further detailed study on a broader scale.     

Geographic distribution of haplotype diversity at the bovine casein locus

The genetic diversity of the casein locus in cattle was studied on the basis of haplotype analysis. Consideration of recently described genetic variants of the casein genes which to date have not been the subject of diversity studies, allowed the identification of new haplotypes. Genotyping of 30 cattle breeds from four continents revealed a geographically associated distribution of haplotypes, mainly defined by frequencies of alleles at CSN1S1 and CSN3. The genetic diversity within taurine breeds in Europe was found to decrease significantly from the south to the north and from the east to the west. Such geographic patterns of cattle genetic variation at the casein locus may be a result of the domestication process of modern cattle as well as geographically differentiated natural or artificial selection. The comparison of African Bos taurus and Bos indicus breeds allowed the identification of several Bos indicus specific haplotypes (CSN1S1*C-CSN2*A²-CSN3*A_I/CSN3*H) that are not found in pure taurine breeds. The occurrence of such haplotypes in southern European breeds also suggests that an introgression of indicine genes into taurine breeds could have contributed to the distribution of the genetic variation observed.     

SPECIES DISCRIMINATION AND EVOLUTIONARY MODE OF BUCHIA (BIVALVIA: BUCHIIDAE) FROM UPPER JURASSIC–LOWER CRETACEOUS STRATA OF GRASSY ISLAND, BRITISH COLUMBIA, CANADA

Abstract: Buchiid bivalves are geographically widespread in Upper Jurassic and Lower Cretaceous strata of the Northern Hemisphere. They are often abundant and their short stratigraphic ranges make them ideal biostratigraphic index fossils; these characteristics also render them useful for study of evolutionary patterns. We used multivariate methods to determine if we could discriminate between species of Buchia and examine how morphological characters change through time within the genus. Using ten morphological characters to describe shell shape and size, we tested for taxonomic differences and morphologic change in populations of buchiids collected from a single stratigraphic section on Grassy Island, located along the west coast of Vancouver Island, British Columbia. Morphometric analysis utilized traditional morphological metrics and techniques, including linear and angular measurements as well as Fourier (outline shape) analyses. Phenetic discrimination revealed considerable overlap among the recognized species in the morphospace, as well as a fairly low discriminatory power between species when compared as a group using a step‐wise canonical variate analysis. Step‐wise discriminant analyses between species pairs gave rise to much higher classification rates, suggesting that different characters are important for distinguishing between different species pairs. Our results also indicate that single individuals and small sample sizes of Buchia specimens are insufficient for biostratigraphic discrimination (unless other rarely preserved features such as the hinge and bysuss ear are available) and that a number of previously described species variants may not be taxonomically valid. A biolog using the multivariate axis that best discriminates between species (CV1) and a random walk‐based test using a Hurst estimate analysis indicate a gradualistic evolutionary mode for the Buchia species of Grassy Island. Shell shape and size of buchiids do not appear to be closely tied to lithofacies changes over the c. 10 myr time interval, suggesting that ecophenotypic variation (as it relates to substrate changes) probably had minimal influence on morphology.     

Summer spawning of Porites lutea from north-western Australia

Most coral species off Australia??s west coast spawn in the austral autumn (March?CApril), with a few species also spawning in the southern spring or early summer (November?CDecember). This is the reverse timing to spawning recorded off Australia??s east coast. Porites lutea, a gonochoric broadcast spawner that is common on Australia??s west coast, is shown here to spawn in the months of November or December, as it does on Australia??s east coast. Spawning occurred between 2 and 5 nights after full moon, with the majority of spawning activity on night 3. Gametes developed over three to four months with rapid development in the last two weeks before spawning. Zooxanthellae were typically observed in mature oocytes, only a week before spawning so their presence may provide a useful indicator of imminent spawning.     

Comparative phylogeography reveals host generalists, specialists and cryptic diversity: Hexabothriid, microbothriid and monocotylid monogeneans from rhinobatid rays in southern Australia

The phylogeography and host specificity of three monogenean species infecting different sites on the southern fiddler ray, Trygonorrhina fasciata (Rhinobatidae) in South Australia (SA) were studied: Branchotenthes octohamatus (Hexabothriidae: gills), Calicotyle australis (Monocotylidae: cloaca) and Pseudoleptobothrium aptychotremae (Microbothriidae: skin). Five rhinobatid species (Aptychotrema vincentiana, T. fasciata, Trygonorrhina sp. A, Aptychotrema rostrata and Rhinobatos typus) with distributions spanning west, south and east Australian coastal waters, were surveyed for monogeneans resembling the three species documented from T. fasciata in SA. The identities of hosts and parasites collected were investigated using the mitochondrial genes ND4 and Cytochrome b (cytb), respectively, in addition to the nuclear marker, Elongation factor 1-alpha (EF1a) for Pseudoleptobothrium. Genetic analyses confirmed that B. octohamatus is geographically widespread and displays little genetic structure, suggesting high levels of gene flow. It was collected from four rhinobatid species throughout its distribution and is not, therefore, host specific. For C. australis, genetic analyses revealed two discrete populations with a genetic divergence of ∼4%, one population occurring west of Bass Strait on two sympatric host species and the other population on the east coast, also occurring on sympatric host species. Similarly, for Pseudoleptobothrium, specimens collected west of Bass Strait were genetically distinct (∼3.5%) from those collected to the east. However, on the east coast, a third Pseudoleptobothrium population was revealed, separated by a genetic distance of >11%, indicating a morphologically cryptic species. Host preferences were indicated for each Pseudoleptobothrium lineage. These genetic discoveries are discussed in relation to life history characteristics of each monogenean species, highlighting the value of phylogeographic analyses to understand the parasite-host relationship.     

Characterization of Nontoxic and Toxin-Producing Strains of Alexandrium minutum (Dinophyceae) in Irish Coastal Waters

A comparative analysis of the morphology, toxin composition, and ribosomal DNA (rDNA) sequences was performed on a suite of clonal cultures of the potentially toxic dinoflagellate Alexandrium minutum Halim. These were established from resting cysts or vegetative cells isolated from sediment and water samples taken from the south and west coasts of Ireland. Results revealed that strains were indistinguishable, both morphologically and through the sequencing of the D1-D2 domain of the large subunit and the ITS1-5.8S-ITS2 regions of the rDNA. High-performance liquid chromatography fluorescence detection analysis, however, showed that only strains derived from retentive inlets on the southern Irish coast synthesized paralytic shellfish poisoning (PSP) toxins (GTX2 and GTX3), whereas all strains of A. minutum isolated from the west coast were nontoxic. Toxin analysis of net hauls, taken when A. minutum vegetative cells were in the water column, revealed no PSP toxins in samples from Killary Harbor (western coast), whereas GTX2 and GTX3 were detected in samples from Cork Harbor (southern coast). These results confirm the identity of A. minutum as the most probable causative organism for historical occurrences of contamination of shellfish with PSP toxins in Cork Harbor. Finally, random amplification of polymorphic DNA was carried out to determine the degree of polymorphism among strains. The analysis showed that all toxic strains from Cork Harbor clustered together and that a separate cluster grouped all nontoxic strains from the western coast.     

Phenotypic variation among populations of Atherinops affinis(Atherinopsidae) with insights from a geometric morphometric analysis

Morphological character variation was examined in Atherinops affinis , a temperate marine silverside with a broad geographic range and presumed limited powers of dispersal. Populations of this species were sampled from three California mainland sites, one Channel Island site and one site in the upper Gulf of California. A geometric morphometric analysis yielded higher resolution in the assessment of phenotypic divergence among the four Pacific coast populations than either body measurement or meristic analysis, and it showed that most of the shape variation among these populations occurs in the head region and body depth of the fish. All three analyses supported the hypothesis that populations of A. affinis from central and southern California coastal waters and from Santa Catalina Island are morphologically distinct from each other; the Santa Catalina Island population was found to be the most divergent. On the basis of meristic characters alone, the population of A. affinis from the upper Gulf of California was different from A. affinis populations along the Pacific coast of California. The analyses revealed variation in several morphological characters, e.g . body depth and meristics, known to vary in association with environmental conditions. Given that A. affinis appears to have low among‐population genetic variation, this species may be phenotypically plastic in response to the environmental conditions of the habitat of each population.     

Genetic variation of two apterous wasps Haplogonatopus apicalis and H. oratorius (Hymenoptera: Dryinidae) in East Asia

The females of Haplogonatopus (Hymenoptera: Dryinidae) are wingless. Thus, the migration ability of adult wasps should be highly restricted. However, passive dispersal of larvae parasitizing their hosts may be possible. In this study we discuss the genetic variation of H. apicalis Perkins and H. oratorius (Westwood) in East Asia, from the perspective of the geographical distribution and the long-distance migration ability of their hosts, using 807 bp of mitochondrial COI gene sequences. Genetic variation of H. apicalis parasitizing Sogatella furcifera (Horváth) was examined on the basis of individuals from western Japan, southern China, and northern Vietnam. High genetic diversity was observed but geographical populations were not recognized. For H. oratorius parasitizing Laodelphax striatellus (Fallén), individuals from the northern and southern coasts of eastern Japan, western Japan, eastern China, and Taiwan were examined. The southern coast of eastern Japan population was discriminated from the other populations, and three core haplotype groups moderately associated with geographical distribution were apparent. However, the population sampled at Hokuriku, located on the northern coast of eastern Japan, was composed of a mixture of haplotypes dominant in other locations, even geographically far separated from China. This may imply the occurrence of the migration pathway of L. striatellus from continental China toward eastern Japan. The results for two parasitoid species can be explained on the basis of the migration ability of the host species.     

The colonial ascidian Didemnum sp. A: Current distribution, basic biology and potential threat to marine communities of the northeast and west coasts of North America

Didemnum sp. A is a colonial ascidian with rapidly expanding populations on the east and west coasts of North America. The origin of Didemum sp. A is unknown. Populations were first observed on the northeast coast of the U.S. in the late 1980s and on the west coast during the 1990s. It is currently undergoing a massive population explosion and is now a dominant member of many subtidal communities on both coasts. To determine Didemnum sp. A's current distribution, we conducted surveys from Maine to Virginia on the east coast and from British Columbia to southern California on the west coast of the U.S. between 1998 and 2005. In nearshore locations Didemnum sp. A currently ranges from Eastport, Maine to Shinnecock Bay, New York on the east coast. On the west coast it has been recorded from Humboldt Bay to Port San Luis in California, several sites in Puget Sound, Washington, including a heavily fouled mussel culture facility, and several sites in southwestern British Columbia on and adjacent to oyster and mussel farms. The species also occurs at deeper subtidal sites (up to 81 m) off New England, including Georges, Stellwagen and Tillies Banks. On Georges Bank numerous sites within a 230 km² area are 50-90% covered by Didemnum sp. A; large colonies cement the pebble gravel into nearly solid mats that may smother infaunal organisms. These observations suggest that Didemnum sp. A has the potential to alter marine communities and affect economically important activities such as fishing and aquaculture.     

MORPHOLOGICAL VARIATION AND DEVELOPMENT IN RAMALINA MENZIESII TAYL.

The common west coast lichen Ramalina menziesii Tayl. has been studied in an attempt to determine the extent of morphological variation and to understand the factors that determine its form. An analysis of a typical population near Santa Barbara, CA, suggested that intrapopulation variation in form was controlled primarily by size increase during growth. Test populations obtained from latitudes as far north as 54°N and as far south as 28°N had values for various morphological characters that were very similar to the Santa Barbara population. It is concluded that variation in form may be the result of differential rates of growth and possibly varying frequency of environmental stresses which disintegrate the thallus.     

Geographic Variation in Nonmetric Dental Traits of the Deciduous Molars of Pan and Gorilla

Physical anthropologists often use nonmetric dental traits to trace the movement of human populations, but similar analysis of the teeth of nonhuman primates or the deciduous teeth is rare. Because nonmetric dental characteristics are manifestations of genetic differences among groups, they vary among geographically distant members of the same species and subspecies. We use 28 nonmetric dental traits in the deciduous molars to compare genetically and geographically distinct groups of extant African apes (Gorilla and Pan). Previous researchers have studied these traits in the adult or juvenile teeth of great apes and humans, and we score our observations according to established standards for hominins. We observe marked differences in trait frequencies between Gorilla and Pan, Pan troglodytes and P. paniscus, and two P. troglodytes subspecies but we find no significant differences between geographically isolated groups within the subspecies. Trait frequencies differ from those found in previous studies that contained fewer individuals. We find that the deciduous molars show similar variation to adult premolars and molars within Pan and Gorilla. This suggests that the deciduous dentition of these and other apes may contain diagnostic traits that are not currently in use.     

The taxonomy, reproductive biology and economic potential of Parkia (Leguminosae: Mimosoideae) in Africa and Madagascar

The taxonomy, reproductive biology and economic potential of Parkia (Leguminosae: Mimosoideae) in Africa and Madagascar. Three species of the pantropical woody genus Parkia are recognized from continental Africa (including São Tomé), P. biglobosa, P. bicolor and P.filicoidea. A fourth species, P. madagascariensis , is confined to Madagascar. All have capitula of similar structure although details of shape vary. Relatives sharing this capitulum structure occur in the Far East and the Neotropics. Patterns of infraspecific variation are described for the mainland species. Parkia biglobosa shows clinal variation in several leaf characters and P. clappertoniana must be regarded as synonymous. Parkia bicolor shows geographical variation especially in capitulum shape and pod width, and P. filicoidea varies geographically in its pod morphology. The red, balllike capitula are pollinated by bats; other visitors include birds, insects and non-flying mammals. In P. biglobosa a proportion of the capitula is functionally male. The pods of the African species contain mealy pulp. Dispersal involves mammals, especially primates, and birds. Information on uses, chemical composition of the seeds and insect pests is summarized.     

Can environmental factors explain size variation in the common shrew (Sorex araneus)?

Shrews are small mammals with a high metabolic rate and may potentially be greatly influenced by environmental factors. Several studies have indicated both morphological and genetical variation in the common shrew (Sorex araneus). The aims of this study were to study patterns in size variation and to test which environmental factors influence body size most. Most study sites were located to northern Norway, between 65° and 70°N, one study site in south Norway was also included (60°N). At one site shrews were studied for 10 consecutive years. Three body measurements (body length, tail length and body mass) and two combined estimates (tail proportion and body condition) were compared, where appropriate, among populations (sites), years and months, and along gradients of altitude (habitat), coast–inland and north–south. Effects of summer climate (temperature and precipitation) were also tested. Size variations among populations of common shrews were found in a number of respects; yearly, seasonal, local and regional. Regional variation was most significant, followed by yearly and seasonal variation. The results suggest a strong link between body size and a coast–inland gradient, with smallest shrews (up to 13% smaller) on inland locations. The main differences between coastal and inland sites are lower winter temperatures and less snow cover at inland sites (factors which are also associated with habitat productivity), which could favour smaller shrews with less energetic demands. Most other variation was relatively small (<5%). Most of the results indicate climate and habitat productivity as the most important factors, which may also vary between years at a single site. Bergmanns's rule, Allen's rule or Dehnel's phenomenon were not supported by this study. The insular syndrome was partly supported. Smaller variations in size may only be proximate adaptations to local food supply, but larger variations are likely to be ultimate adaptations.