A Study of Sedimentation and Resuspension in the Near-Bottom Boundary Layer Using Cylindrical Traps in Hydrobiological Investigation

An inexpensive and convenient method for marine biological investigation of the sedimentation in the immediate proximity of biological objects on the seabed is considered. The method is a modification of the widespread method of cylindrical sediment traps [1,6]. It makes it possible to analyze the amount of suspended particulate matter passing within the near-bottom boundary layer and the processes of sedimentation and resuspension. Its application is illustrated by the results of investigation of the influence of some processes taking place in the near-bottom layer on the distribution of scleractinian corals in a reef off Dao-Chao Island (Baitylong Archipelago, the Gulf of Tonkin).     

Modeling Transport of Fluff Layer Material in the Baltic Sea

To estimate impacts of nutrients and pollutants discharged by river inflow on the ecosystem it is essential to quantify the sedimentation, resuspension and transport processes of fine particulate matter. The present study aims at the modeling of basic transport processes of fine material in the western Baltic. A three-dimensional model of the Baltic Sea, that is based on the Modular Ocean Model (MOM-3.1) (Pacanowski & Griffies 2000), was applied to study maximum bottom shear velocities. Comparing the calculated shear velocities with the critical value for resuspension of fluff layers allows an identification of potential areas of deposition and accumulation. Further, model experiments were conducted to study transport paths of fluff layers in the southwestern Baltic. The model results give information about the resuspension and accumulation areas of fine material and could provide indications of potential accumulation areas of diapause eggs or cysts.     

The Near-bottom Layer as an Ecological Boundary in Marine Ecosystems: Diversity, Taxonomic Composition and Community Definitions

The near-bottom layer of the ocean represents a boundary between two oceanic biotopes (pelagial and benthal), and as a result, the animal populations living in this habitat belong to various diverse ecological groups. There is a profusion of terms to designate the organisms which live near the sea bottom, both in relation to their behaviour and to boundary-layer hydrodynamics. Do the fauna living above the sea bottom form a true community? Should the fauna in this habitat be considered as a true community or a mixed assemblage comprised of benthic and pelagic organisms? Between 1988 and 1996, more than 500 suprabenthic hauls were taken with a modified Macer-GIROQ sledge at 15 sites in the English Channel and the Seine Estuary (5–70 m), at 13 sites on the southern edge of the Cap Ferret Canyon (Bay of Biscay, 350–1100 m), and at 8 sites on the Atlantic seamounts south of the Azores (260–2235 m). This intensive sampling permitted the collection of more than several hundred species and will serve to facilitate discussion concerning the biodiversity of the fauna collected near the sea bottom. This paper proposes that in the estuary, the near-bottom layer is colonized by a mixed assemblage of both pelagic and benthic organisms, while in the coastal and in the bathyal zones, the response to the gradual extinction of light and the decreasing benthic resuspension at near-bottom depths leads to an ecocline.     

Particle trapping on leaves and on the bottom in simulated submerged plant stands

Hydrobiologia - Two of the processes that influence the ecological behaviour of lakes are sedimentation and resuspension of fine particulate matter. It is well known that water plants reduce...     

Summer sedimentation in six shallow arctic lakes

The movement of sediment between the lake bottom and water column of shallow lakes can be sizeable due to the large potential for resuspension in these systems. Resuspended sediments have been shown to alter phytoplankton community composition and elevate water column production and nutrient concentrations. We measured the summer sedimentation rates of two lakes in 2003 and six lakes in 2004. All lakes were shallow and located in the Alaskan Arctic. In 2004, turbidity, light attenuation, total sediment:chlorophyll a mass in the sediment traps, and thermal stratification were also measured in each of the lakes. The sediment:chlorophyll a mass was much greater than if the sediment was derived from phytoplankton production in all of the lakes, indicating that the source of the sedimenting material was resuspension and allochthonous inputs. Consistent with these findings, the temporal variation in sedimentation rate was synchronous between most lakes, and sedimentation rate was positively related to wind speed and rainfall suggesting that sedimentation rate was strongly influenced by landscape-scale factors (e.g., wind and rain events). Two of the lakes are located on deposits of loess that accumulated during past glacial periods. These two lakes had sedimentation rates that were significantly greater and more variable than any of the other lakes in the study, as well as high turbidity and light attenuation. Our results indicate that sedimentation in these shallow arctic lakes is supported primarily by allochthonous inputs and resuspension and that landscape-scale factors (e.g., weather and geology) impact on the transport of materials between the lake bottom and water column. Handling editor: J. Saros     

The significance ofSaccocoma-calciturbidites for the analysis of the Polish epicontinental late Jurassic Basin: An example from the Southern Cracow-Wielun Upland (Poland)

Summary In the top section of the Upper Jurassic profile in the S part of the Cracow-Wielun upland there occur deposits with numerous fragments of the plantonic crinoidsSaccocoma. Sedimentary structures indicate that these deposits are calciturbidites with domination of the redeposited pelagic material. TheSaccocoma-calciturbidites rest on the slope beds of Oxfordian cyanobacterial-sponge carbonate buildups formed in the Polish epicontinental basin, bordering the Tethys ocean in the north. The occurrence of the planktonicSaccocoma seems to be connected with a short deepening the S part of the Polish epicontinental basin in the Late Jurassic. This deepening caused the change within biocoenoses thriving in carbonate buildups and was mainly expressed in reducingTubiphytes. ‘Tubiphytes-reefs’, representing the last stage in the development of the carbonate buildups in the S part of the Cracow-Wielun upland, marked the most shallow sedimentation environment. With deepending of the basin,Tubiphytes and other benthonic forms disappeared, and, simultaneously, the dominant fauna became planktonic. The abundance of planktonic crinoidsSaccocoma (=Lombardia), as well as the presence of planktonic foraminifers, nannoplankton cf.Schizosphaerella, coccoliths and radiolarians indicates a pelagic, open-sea depositional environment. TheSaccocoma-dominated sediments, which had been primarily deposited from a suspension on a sea floor with a distinct relief, became subsequently transported by turbidity currents. A limited extent and thickness of theSaccocoma-calciturbidites was caused by a relatively small amount of the primary material which could be transferred by the turbidity currents because the period of pelagic sedimentation was short. TheSaccocoma-calciturbidites indicate a distinct shift in conditions of sedimentation resulting from over-regional changes and, despite the lack of index fossils, seem to represent a local lithostratigraphic horizon. These sediments probably mark a sedimentation event which caused a minor levelling of the sea floor relief. Then, after a sedimentation break, wide-spread destruction of the tops of carbonate buildups and formation of debris flows in the shallowing Late Jurassic sea took place. TheSaccocoma-calciturbidites in the S part of the Cracow-Wielun upland can be found near edges of horsts. This suggests that the foundations of these horsts are probably of sedimentary origin, dating back at least to the Late Jurassic. TheSaccocoma-calciturbidites in the S part of the Polish epicontinental basin seem to result from local, synsedimentary tectonic movements, which probably reflect over-regional events on the one hand, and oscillations of the sea level-on the other.     

Transport-dependent maturation of organelles in neurons

Some organelles show a spatial gradient of maturation along the neuronal process where more mature organelles are found closer to the cell body. This gradient is set up by progressive maturation steps that are aided by differential organelle distribution as well as transport. Autophagosomes and endosomes mature as they acquire lysosomal membrane proteins and decrease their luminal pH as they are retrogradely transported towards the cell body. The acquisition of lysosomal proteins along the neuronal processes likely occurs through fusion or membrane exchange events with Golgi-derived donor transport carriers that are transported anterogradely from the cell body. The mechanisms by which endosomes and autophagosomes mature might be applicable to other organelles that are transported along neuronal processes. Defects in axonal transport may also contribute to the accumulation of immature organelles in neurons. Such accumulations have been seen in neurons of neurodegenerative models.     

Sediment dynamics and estuarine circulation in the turbidity maximum of the Elbe river

Data are presented from several campaigns concerning to the residual transport of water, salt and suspended particulate matter (SPM) at different depths and at different longitudinal and cross-sectional locations in the Elbe Estuary, Northern Germany. The intratidal behaviour of SPM is analysed and explained in terms of cyclic settling and resuspension. Superimposed on these local processes are advective horizontal transports of water and SPM in different vertical layers. Tidally averaged horizontal fluxes of salinity and SPM have been calculated at different depths. For the most part, they show upstream directed transport in the bottom layers, while in the upper water column SPM is carried towards the sea. Examples of the influence of vertical salinity gradients on SPM dynamics, of the lateral variation of residual transport of water and SPM, and the effects of a runoff peak are also presented.     

Iron uptake and transport across physiological barriers

Iron is an essential element for human development. It is a major requirement for cellular processes such as oxygen transport, energy metabolism, neurotransmitter synthesis, and myelin synthesis. Despite its crucial role in these processes, iron in the ferric form can also produce toxic reactive oxygen species. The duality of iron’s function highlights the importance of maintaining a strict balance of iron levels in the body. As a result, organisms have developed elegant mechanisms of iron uptake, transport, and storage. This review will focus on the mechanisms that have evolved at physiological barriers, such as the intestine, the placenta, and the blood–brain barrier (BBB), where iron must be transported. Much has been written about the processes for iron transport across the intestine and the placenta, but less is known about iron transport mechanisms at the BBB. In this review, we compare the established pathways at the intestine and the placenta as well as describe what is currently known about iron transport at the BBB and how brain iron uptake correlates with processes at these other physiological barriers.     

The benthic boundary layer approach and its application to Lake Päijänne,Finland

Resuspension of bottom sediments is the net result of a wide variety of different fluid mechanical processes with characteristic time and length scales that extend over six orders of magnitude. The sum of these effects is most heavily concentrated in a layer adjacent to the bottom called the benthic boundary layer (BBL). The physics of BBL must be understood before improved solutions to the resuspension problem are possible. Traditionally in lakes, sedimentation and resuspension have been modelled with the aid of equations which ignore the time and space variations of near bottom processes. This can lead to wrong estimates of material transport. With the exception of few recent studies, benthic boundary layer approach has been mainly applied to marine environments. The instrumentation has been a major problem for development of the theory and its applications, but during recent years some new instruments have been giving promising results. This paper discusses the applicability of the theory in Finnish lakes and presents results from Lake Päijänne.     

Pelagic-benthic coupling and diagenesis of nucleic acids in a deep-sea continental margin and an open-slope system of the Eastern Mediterranean

Downward fluxes of nucleic acids adsorbed onto settling particles play a key role in the supply of organic phosphorus and genetic material to the ocean interior. However, information on pelagic-benthic coupling, diagenesis, and processes controlling nucleic acid preservation in deep-sea sediments is practically nonexistent. In this study, we compared nucleic acid fluxes, sedimentary DNA and RNA concentrations, and the enzymatically hydrolyzable fraction of DNA in a bathyal continental margin (North Aegean Sea) and an open-sea system (South Aegean Sea) of the Eastern Mediterranean. The two systems displayed contrasting patterns of nucleic acid fluxes, which increased significantly with depth in the North Aegean Sea and decreased with depth in the South Aegean Sea. These results suggest that in continental margin and open-ocean systems different processes control the nucleic acid supply to the sea floor. Differences in nucleic acid fluxes were reflected by nucleic acid concentrations in the sediments, which reached extremely high values in the North Aegean Sea. In this system, a large fraction of DNA may be buried, as suggested by the large fraction of DNA resistant to nuclease degradation and by estimates of burial efficiency (ca. eight times higher in the North than in the South Aegean Sea). Overall, the results reported here suggest that the preservation of DNA in deeper sediment layers may be favored in benthic systems characterized by high sedimentation rates.     

Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean

Downward fluxes of nucleic acids adsorbed onto settling particles play a key role in the supply of organic phosphorus and genetic material to the ocean interior. However, information on pelagic-benthic coupling, diagenesis, and processes controlling nucleic acid preservation in deep-sea sediments is practically nonexistent. In this study, we compared nucleic acid fluxes, sedimentary DNA and RNA concentrations, and the enzymatically hydrolyzable fraction of DNA in a bathyal continental margin (North Aegean Sea) and an open-sea system (South Aegean Sea) of the Eastern Mediterranean. The two systems displayed contrasting patterns of nucleic acid fluxes, which increased significantly with depth in the North Aegean Sea and decreased with depth in the South Aegean Sea. These results suggest that in continental margin and open-ocean systems different processes control the nucleic acid supply to the sea floor. Differences in nucleic acid fluxes were reflected by nucleic acid concentrations in the sediments, which reached extremely high values in the North Aegean Sea. In this system, a large fraction of DNA may be buried, as suggested by the large fraction of DNA resistant to nuclease degradation and by estimates of burial efficiency (ca. eight times higher in the North than in the South Aegean Sea). Overall, the results reported here suggest that the preservation of DNA in deeper sediment layers may be favored in benthic systems characterized by high sedimentation rates.     

Adaptation of Arctic and Antarctic ice metazoa to their habitat

Sea ice is a unique habitat in polar seas. A diverse assemblage of plants and animals lives in its interior parts and at the ice-water interface. Their distribution is to a large extent controlled by abiotic parameters such as light, salinity and space, as well as food availability. In both the Arctic and Antarctic, the highest metazoan concentrations occur mostly in the bottom centimetres of the sea ice. Dominant metazoans are nematodes, turbellarians, rotifers and crustaceans. The ice-water interface itself houses in addition to endemic amphipods migrants from both the ice and the pelagic realm. To survive with the environmental conditions of the sea ice habitat, the ice biota is adapted, specifically to seasonal salinity variations from below 5 to above 60 PSU. Sea ice metazoans feed mainly on the algae growing within the sea ice. The loss of habitat during ice melt periods can lead to substantial sedimentation of ice fauna to the sea floor, where it might act as food source for the benthos.     

Sediment resuspension: rescue or downfall of a thermally stratified eutrophic lake?

The aim of this study was to estimate the effect of sediment resuspension, a common phenomenon in many lakes, on the phosphorus budget of a eutrophicated lake. We used two different approaches, mass balance calculations and spatially comprehensive resuspension measurements, to determine the level of phosphorus loading from which rehabilitation action is started in a dimictic north temperate lake. The effect of resuspension was assumed to be significant, since it often is a governing process for cycling of material in lakes. Internal loading was multifold to that of external loading as determined by the budget calculation. Spatially comprehensive sedimentation and resuspension measurements were necessary, since deep site versus spatially comprehensive measurements had a marked difference in their results. Resuspension of P slightly exceeded the internal loading assessed by budget calculations and thereby proved its significance as a governing in-lake process that influences P cycling strongly. The shallow areas were of importance, since most of the total P load originated from there. The fate of P after resuspension depends on the retention capacity of resuspended particles in addition to prevailing biological and physico-chemical conditions. Therefore, sediment resuspension can either strengthen or diminish internal nutrient load and the processes of the shallow zones are of importance.     

Lissarca notorcadensis (Bivalvia: Philobryidae) living on Notocidaris sp. (Echinoidea: Cidaridae): Population dynamics in limited space

Summary Population dynamics of the epizoic bivalve Lissarca notorcadensis living on spines of cidaroid sea urchins in the Weddell Sea were investigated. Total production (somatic & gonad) of the suspension feeding bivalve ranged between 16.5 and 487.4 mg AFDM y^–1 per sea urchin. Annual sedimentation rates are not sufficient to maintain the production of the Lissarca sub-populations carried by the sea urchins, and resuspension of organic matter is most likely to be an important food source. The ratio of the number of freshly settled juveniles to the number of embryos brooded is between 0.054 and 0.207 and seems negatively related to the biomass already present, indicating intraspecific competition for space. Interspecific competition for space is caused by the strong preference of L. notorcadensis as well as other epizoa (colonial anthozoans and bryozoans) for the spines located on the aboral hemispere of the sea urchins.AWI Publication No. 572     

Storage,redistribution and net export of dissolved and sediment-bound nutrients,Vejle Fjord,Denmark

Sixty three percent of the nitrogen (total transported 2041 × 10³ kg y^–1) and 17% of the phosphorus (total 159 × 10³ kg y^–1) supplied from terrestrial sources to Vejle Fjord during the period September 1988 to October 1989 is exported to the Kattegat. The sediment nutrient concentrations in the estuary are mainly governed by hydrography and resuspension. The general wind-induced circulation consists of outgoing currents along the southern side and ingoing currents along the northern side of the estuary. The sediments in shallow water on the southern side had higher concentrations of nutrients.Resuspension resulted in large differences between gross sedimentation and net sedimentation, especially in shallow water. Gross sedimentation of total-N in shallow water was 819 × 10³ kg y^–1 compared to a net sedimentation of 19 × 103 kg y^–1. The shallow water areas in the estuary (10% of the area), had a net sedimentation of total-N which was less than 1% of the supply.Wave-induced resuspension only occurs in exposed parts of the deep water area, when wind velocities exceed 10 m s^–1. The concentration of nutrients in the sediments was found to increase with distance from the river (the source) and with increasing depth, as a result of resuspension near the river mouth in the inner part of the estuary. In sheltered parts of the estuary there was no wave-induced resuspension and the net sedimentation equals gross sedimentation. The rate of sedimentation in deep water areas was 12.2 g m^–2y^–1 for total-N and 2.1 gm^–2y^–1 for total-P.     

Using clay to control harmful algal blooms: deposition and resuspension of clay/algal flocs

Harmful algal blooms (HABs) may be legitimate targets for direct control or mitigation, due to their impacts on commercial fisheries and public health. One promising control strategy is the rapid sedimentation of HABs through flocculation with clay. The objective of this study was to evaluate flow environments in which such a control strategy might be effective in removing harmful algae from the water column and depositing a layer of clay/algal flocs on the sea floor. We simulated the natural environment in two laboratory flumes: a straight-channel “17 m flume” in which flocs settled in a still-water column and a “racetrack flume” in which flocs settled in flow. The 17 m flume experiments were designed to estimate the critical bed shear stress for resuspension of flocs that had settled for different time periods. The racetrack flume experiments were designed to examine the deposition and repeated resuspension of flocs in a system with tidal increases in flow speed. All flume runs were conducted with the non-toxic dinoflagellate Heterocapsa triquetra and phosphatic clay (IMC-P4). We repeated the experiments with a coagulant, polyaluminum hydroxychloride (PAC), expected to enhance the removal efficiency (RE) of the clay. Our experiments indicated that at low flow speeds (≤10 cm s⁻¹), phosphatic clay was effective at removing algal cells from the water column, even after repeated resuspension. Once a layer of flocs accumulated on the bed, the consolidation, or dewatering, of the layer over time increased the critical shear stress for resuspension (i.e. decreased erodibility). Resuspension of a 2 mm thick layer that settled for 3 h in relatively low flow speeds (≤3 cm s⁻¹) would be expected at bed shear stress of 0.06–0.07 Pa, as compared to up to 0.09 Pa for a layer that was undisturbed for 9 or 24 h. For the same experimental conditions, the addition of PAC decreased the removal efficiency of algal cells in flow and increased the erodibility of flocs from the bottom. By increasing the likelihood that flocs remain in suspension, the addition of PAC in field trials of clay dispersal might have greater impact on sensitive, filter-feeding organisms. Overall, our experiments suggest that the flow environment should be considered before using clay as a control strategy for HABs in coastal waters.     

Human occupancy as a source of indoor airborne bacteria

Exposure to specific airborne bacteria indoors is linked to infectious and noninfectious adverse health outcomes. However, the sources and origins of bacteria suspended in indoor air are not well understood. This study presents evidence for elevated concentrations of indoor airborne bacteria due to human occupancy, and investigates the sources of these bacteria. Samples were collected in a university classroom while occupied and when vacant. The total particle mass concentration, bacterial genome concentration, and bacterial phylogenetic populations were characterized in indoor, outdoor, and ventilation duct supply air, as well as in the dust of ventilation system filters and in floor dust. Occupancy increased the total aerosol mass and bacterial genome concentration in indoor air PM(10) and PM(2.5) size fractions, with an increase of nearly two orders of magnitude in airborne bacterial genome concentration in PM(10). On a per mass basis, floor dust was enriched in bacterial genomes compared to airborne particles. Quantitative comparisons between bacterial populations in indoor air and potential sources suggest that resuspended floor dust is an important contributor to bacterial aerosol populations during occupancy. Experiments that controlled for resuspension from the floor implies that direct human shedding may also significantly impact the concentration of indoor airborne particles. The high content of bacteria specific to the skin, nostrils, and hair of humans found in indoor air and in floor dust indicates that floors are an important reservoir of human-associated bacteria, and that the direct particle shedding of desquamated skin cells and their subsequent resuspension strongly influenced the airborne bacteria population structure in this human-occupied environment. Inhalation exposure to microbes shed by other current or previous human occupants may occur in communal indoor environments.     

Linking nutrient limitation and water chemistry in upland lakes to catchment characteristics

Overbank sedimentation on river floodplains can result in significant reduction of the suspended sediment load transported by a river and can thus represent an important component of the catchment sediment budget. Such conveyance losses will also exert an important influence on sediment-associated contaminant fluxes and budgets. This contribution reports the results of a study of sediment-associated contaminants (i.e. total-P, Cr, Cu, Pb and Zn) fluxes in the River Swale (1346 km²) and River Aire (1002 km²) in Yorkshire, U.K., aimed at quantifying the role of overbank floodplain sedimentation in the sediment-associated contaminant budgets. The catchment of the River Aire is dominated by urban and industrial land use in its middle and lower reaches, whereas the River Swale drains a largely rural catchment, although there is a legacy of metal mining in its headwaters which impacts on heavy metal transport by the river. The results for the River Swale indicate that the conveyance losses associated with the deposition of sediment-associated contaminants on the floodplains bordering the main river can be as high as 47% of the total flux through the main channel system. Equivalent values for the River Aire range up to 26%. Contrasts between the two rivers reflect both the location of the contaminant sources within the catchments and the relative magnitude of the fine sediment deposition fluxes associated with their floodplains.     

A dynamic mass balance model for phosphorus fluxes and concentrations in coastal areas

This paper presents a general, process-based mass balance model (CoastMab) for total phosphorus (TP) in defined coastal areas (at the ecosystem scale). The model is based on ordinary differential equations and calculates inflow, outflow and internal fluxes on a monthly basis. It consists of four compartments: surface water, deep water, erosion/transportation areas for fine sediments and accumulation areas for fine sediments. The separation between surface water and deep water is not done based on water temperature, but on sedimentological criteria instead (from the theoretical wave base). There are algorithms for all major internal TP fluxes (sedimentation, resuspension, diffusion, mixing and burial). Validations were performed using data from 21 different Baltic coastal areas. The results show that the model predicts monthly TP in water and chlorophyll a very well (generally within the uncertainty bands of the empirical data). The model has also been put through sensitivity tests, which show that the most important factor regulating the predictions of the model is generally the TP concentration in the sea beyond the coast. The model is simple to apply, since all driving variables may be accessed from maps or monitoring programs. The driving variables include coastal area, section area (between the defined coastal area and the adjacent sea), mean and maximum depths, latitude (used to predict water temperatures, stratification and mixing), salinity and TP concentration in the sea. Many of the model structures are general and could be used for areas other than those included in this study, e.g., for open coasts, estuaries or tidal coasts, as well as for other substances than phosphorus.