Modification of an index of biotic integrity based on fish assemblages to characterize rivers of the Seine Basin,France

The Index of Biotic Integrity (IBI) is a measure of fish assemblage health that has been used to assess catchment and stream quality throughout North America. It reflects human perturbations on natural environmental structures and processes. While preserving the ecological foundation of the original North American metrics, we have modified and adapted the IBI to the mainstem Seine River and its major tributaries in France. This successful modification of the IBI to a considerably different fish fauna on a different continent further supports its wider use outside the midwestern United States. Using data collected in 1967, 1981, and 1988–1989 from a total of 46 sites, we show spatial and temporal variation in the Seine as indicated by IBI scores. Statistically significant relationships were found between IBI and catchment area but insignificant relationships existed between IBI and an independent Water Quality Index (WQI) based on water chemistry. Comparisons between the IBI and the WQI indicate that the former is a more sensitive and robust measure of water body quality. Our results demonstrate that the IBI, combined with a statistically designed national monitoring program, would offer a reliable means of assessing spatial patterns and temporal trends in water body improvement or degradation in France. The more primitive fish families in the Basin were affected first by perturbations. These families include all the diadromous species found in the Seine and suggest serious disruption of their life histories.     

The use of fish in ecological assessments

Abstract Fish provide powerful tools for assessing aquatic environments. Three attributes are especially significant: the sensitivity of fish to most forms of human disturbance, their usefulness at all levels of biological organization and the favourable benefit-to-cost ratio offish assessment programmes. Fish can be used as indicators over wide temporal and spatial ranges. Because they cover all trophic levels of consumer ecology, fish can effectively integrate the whole range of ecological processes in waterways. Fish have been used in many different roles for assessing river health and monitoring responses to remedial management. Three of these applications appear to have particular value for management of Australian rivers: (i) automated systems monitoring fish ventilation can provide sensitive, broad-spectrum and continuous sensing of water quality to protect receiving waters or water-supply intakes; (ii) programmes collecting routine data on commercial or recreational fisheries can be designed and analysed so as to isolate confounding effects due to fishery-specific factors and, hence, used to detect and monitor environmental change on large scales; (iii) the Index of Biotic Integrity (IBI) can be modified to suit Australian conditions and fish communities to meet the important need for a predictive model of aquatic environmental quality. The IBI is a quantitative biological tool with a strong ecological foundation that integrates attributes from several levels of ecosystem organization. Examples of the use of IBI elsewhere suggest its robustness, flexibility and sensitivity can cope effectively with the low diversity of the Australian fish fauna and the dominance of ecological generalists. A provisional structure is suggested for a test of the IBI in four riverine regions of New South Wales.     

An application of canonical correspondence analysis for developing ecological quality assessment metrics for river macrophytes

1. Aquatic macrophyte composition and abundance is required by the European Union's Water Framework Directive for determining ecological status. Five metrics were produced that can be combined to determine the deviation of aquatic macrophytes from reference conditions in Northern Ireland's rivers. 2. Species optima and niche breadths along silt, nitrate, pH, conductivity and dissolved oxygen gradients were generated from aquatic macrophyte and water quality surveys conducted at 273 sites throughout Northern Ireland using Canonical Correspondence Analysis (CCA). Five metric scores based on these environmental gradients were determined at new monitoring sites using the mean optima of the species occurring at the site, weighted by percentage cover and niche breadth of each species. 3. A preliminary reference network of 32 sites of high physico‐chemical and hydromorphological quality, and representative of the range of river types in Northern Ireland, enabled reference metric scores to be produced for each river type. Five unimpacted and twenty impacted sites were used for testing the performance of the metrics. By subtracting reference metric scores from metric scores at a monitoring site measures of ecological impact could be determined along five different impact gradients. Metrics were also combined to give a measure of total ecological change. 4. The metrics system distinguished unimpacted from impacted sites and correctly identified 77% of the known impacts. The metrics distinguished different types of impact, e.g. silt and nitrate. 5. Aquatic macrophyte occurrence and abundance has high natural variability at a site, both temporally and spatially. This method was designed to be sensitive to ecological change whilst reducing noise caused by natural variation.     

Applying an index of biotic integrity based on fish assemblages in a West African river

A multivariate measure of river quality, the Index of Biotic Integrity (IBI), was adapted to a West African river, the Konkoure (Republic of Guinea). Fish assemblages were sampled using gill-nets during the dry season to provide data for the IBI. Ten metrics were subsequently defined. The capacity of the modified IBI to assess the impact of a bauxite treatment plant was tested. The IBI decreased as expected at the impacted station. Detailed examination of the data revealed that one family, the Mormyridae, was almost eliminated from the impacted station, suggesting that members of this familiy can be considered as intolerant species in future uses of the IBI in other African rivers.     

A fish index of biotic integrity for South Dakota's Northern Glaciated Plains Ecoregion

Ecosystem goods and services in streams are impaired when their biotic communities are degraded by anthropogenic stressors. An index of biotic integrity (IBI) translates community structure into a standardized ecoregion-specific stream health score. Documenting stream health is especially important in the Northern Glaciated Plains (NGP) Ecoregion, which is undergoing rapid landscape alterations through increased agriculture production. Our objectives were to develop a fish IBI and validate candidate reference sites for NGP wadeable perennial streams. Fish were sampled from 54 sites (consisting of reference sites, known-condition least and most disturbed sites, and random sites) during summers 2006–2011. Candidate metrics were sorted into nine metric classes based on attributes of fish assemblage form and function. Metric values were screened using metric range, signal-to-noise ratios, responsiveness to disturbance, and redundancy tests until each metric class contained only those metrics most responsive to anthropogenic stressors. The final IBI consisted of six metrics that were reflective of prairie stream fish assemblages, and differentiated between known-condition least and most disturbed sites. The mean reference sampling site IBI scores were found to be similar to both least and most disturbed sites (Mann–Whitney U-test; P < 0.05). Twelve reference site scores were below the NGP's median (69), whereas the other 11 sites were above the median and were representative of least disturbed conditions. We now have developed a standardized bioassessment tool for evaluating stream health, as well as a baseline for long-term monitoring in a dynamic ecoregion.     

基于鱼类物种状况的长江生态环境质量评估

鱼类是水域生态系统的重要组成部分, 也是水域生态环境良好的指示类群。为合理评估长江生态环境的现状和变化趋势, 文章提出将土著鱼类物种数和珍稀特有鱼类物种数作为评价指标, 并建立了相关的评价基准和等级划分标准。以2010年和2020年为评价年, 评估了长江干流及代表性重点水域的生态环境质量。结果显示, 当前长江上游干流和下游干流的生态环境质量优于中游; 支流赤水河的生态环境质量良好, 大型湖泊鄱阳湖的生态环境质量中等。从时间上看, 随着长江十年禁渔等一系列保护措施的实施, 长江干流的生态环境质量有不同程度地好转。在此基础上, 提出了进一步改善长江生态环境的对策与建议。     

Small scale application and assessment of a Index of Biotic Integrity for a large boreal river

Modifications and use of Karr’s Index of Biotic Integrity (IBI) for assessing the effects of anthropogenic impacts to aquatic ecosystems have typically occurred using data collected at the macro scale. However, some non-point sources of habitat degradation occur at small scales. One possible source of perturbation to fish habitat in boreal rivers is the application of rip rap shoreline armouring in human use areas. In this study we assess the use of IBI in a small scale setting and discuss the potential impact of rip rap shoreline armouring. We captured small and juvenile fishes weekly during 2002–2003 from 12 sample sites within the littoral zone of a human use area using a modified beach seine. Principal component analysis (PCA) was performed on the data to examine the relationship between species composition and IBI scores. We also performed PCA on the IBI metrics to assess our modifications. The IBI method produced higher scores for armoured sites than for unarmoured sites. We found a strong rank order correlation (Spearman’s ρ > 0.93; p < 0.001) between the modified IBI scores and the first principal component, suggesting that Karr’s original empirically-based IBI is strongly linked to species composition. We found a high degree of redundancy between the metrics of the IBI that validate our modifications. These results suggest that IBI can be a suitable method for assessing non-point impacts from within a small study area. Our results also indicate that fish habitat from rip rap armoured sites within the test area had consistently higher IBI scores that unarmoured sites.     

A multi‐metric fish index to assess the environmental condition of estuaries

The development of a multi‐metric fish index, the Estuarine Fish Community Index (EFCI), for assessing estuarine environments is described. The index comprises 14 metrics or measures that represent four broad fish community attributes: species diversity and composition, species abundance, nursery function and trophic integrity. The individual metrics were evaluated using data that were collected on a South African estuary that was degraded and in which rehabilitation measures were implemented. The evaluation suggested that the selected metrics adequately measure the condition of separate but related components of estuarine fish communities and that these reflect environmental condition. Reference conditions and metric thresholds were derived from fish community data collected during an extensive national study. The final multi‐metric index was then constructed and evaluated. The EFCI combines both structural and functional attributes of estuarine fish communities and integrates these to provide both a robust and sensitive method for assessing the ecological condition of estuarine systems. It is also an effective communication tool for converting ecological information into an easily understood format for managers, policy makers and the general public.     

Validation of a fish-based index of biotic integrity for streams and rivers of central Mexico

An existing version of a fish assemblage-basedindex of biotic integrity (IBI) for the streamsand rivers of west central Mexico was testedwith independent data to validate itsusefulness as a measure of ecosystem qualityand to determine the geographic area where itis effective. Fish assemblages from 63 uplandsites in 10 basins in central Mexico(Armería, Ameca, Coahuayana, Marabasco,Purificación, Grande de Morelia, Grande deSantiago, Lerma, Balsas and Pánuco) wereassessed using the metrics and scoring criteriafrom the existing IBI and then compared withindependent evaluations of habitat and waterquality. IBI scores were congruent withhabitat and water quality values in theArmería, Purificación and Marabascobasins, where the IBI was first developed, aswell as in the adjacent Ameca and Coahuayanabasins. We conclude that the IBI can be usedwithout modification to assess environmentalquality in non-coastal streams and riverswithin these five basins. Further data areneeded from the Grande de Morelia, Grande deSantiago and middle Lerma basins, but ourresults suggest that the existing IBI may alsobe effective here. However, the existing IBIdoes not consistently reflect habitat and waterquality conditions in the Balsas and Pánucobasins and must be modified before it can beapplied there. Necessary modifications in theBalsas basin appear to be small and relatedprimarily to changes in the scoring criteriafor metrics. However, in the Pánuco basinmore substantive changes in the nature of themetrics are required. Changes in the IBI forthese basins are proposed. The IBI is nowvalidated for use in river monitoring,conservation and restoration efforts in 5basins in west central Mexico and suggestionsfor its application in other basins areavailable here.     

Developing a Benthic Index of Biological Integrity and Some Relationships to Environmental Factors in the Subtropical Xiangxi River,China

The aim of this study is to develop a benthic index of biotic integrity (B‐IBI) to help understand how the increasing anthropogenic pressure may impact the subtropical Xiangxi River in China. Benthic macroinvertebrate and environmental surveys were conducted at 77 sites in early summer 2004. Each collection site was categorized as reference or impaired based on physical, chemical, biological, and land‐use information. Six non‐redundant metrics from 35 metrics were used to differentiate between reference and impaired sites. We selected six metrics for the final IBI. The scoring criteria of each metric were normalized based on the quadrisection and 0–10 scaling systems. Both scaling methods were used to assess the aquatic health of each site in the Xiangxi River watershed. The results showed that most sites were in fairly poor condition. Furthermore, we identified the relationship between B‐IBI metrics, water‐quality, and land‐use variables with a principal component analysis. A composite of nutrients and land‐use intensity explained most variances. These results suggest that the B‐IBI may be a suitable method for assessing river conditions within the subtropical Xiangxi River in central China (© 2010 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Bird based Index of Biotic Integrity: Assessing the ecological condition of Atlantic Forest patches in human-modified landscape

Wooded biomes converted to human-modified landscapes (HML) are common throughout the tropics, yielding small and isolated forest patches surrounded by an agricultural matrix. Diverse anthropogenic interventions in HMLs influence patches in complex ways, altering natural dynamics. Assessing current condition or ecological integrity in these patches is a challenging task for ecologists. Taking the Brazilian Atlantic Forest as a case study, we used the conceptual framework of the Index of Biotic Integrity (IBI), a multimetric approach, to assess the ecological integrity of eight small forest patches in a highly disturbed HML with different configurations and histories. The IBI was developed using bird assemblages found in these patches, and its performance was compared with analytical approaches commonly used in environmental assessment, such as general richness and Shannon’s diversity index. As a first step, the IBI procedure identifies an existing gradient of human disturbance in the study region and checks which biotic characteristics (candidate metrics) vary systematically across the gradient. A metric is considered valid when its’ relationship with the gradient provides an ecological interpretation of the environment. Then, the final IBI is elaborated using each valid metric, obtaining a score for each site. Over one year of sampling, 168 bird species were observed, providing 74 different bird candidate metrics to be tested against the disturbance gradient. Seven of them were considered valid:richness of threatened species; richness of species that use both “forest and non-forest” habitats; abundance of endemics, abundance of small understory-midstory insectivores, abundance of exclusively forest species; abundance of non-forest species, and abundance of species that forage exclusively in the midstory stratum. Each metric provided complementary information about the patch’s ecological integrity. The resulting IBI showed a significant linear relationship with the gradient of human disturbance, while total species richness and Shannońs diversity index did not. Application of numerical approaches, such as total species richness and Shannon’s diversity, did not distinguish ecological traits among species. The IBI proved better for assessing and interpreting ecological and environmental condition of small patches in highly disturbed HML. The IBI framework, its multimetric character, and the ease with which it can be adapted to diverse situations, make it an effective approach for assessing environmental conditions in the Atlantic Forest region, and also for many other small forest patches in the tropics.     

The impact of rare taxa on a fish index of biotic integrity

The index of biotic integrity (IBI) is a commonly used bioassessment tool that integrates abundance and richness measures to assess water quality. In developing IBIs that are both responsive to human disturbance and resistant to natural variability and sampling error, water managers must decide how to weigh information about rare and abundant taxa, which in turn requires an understanding of the sensitivity of indices to rare taxa. Herein, we investigated the influence of rare fish taxa (within the lower 5% of rank abundance curves) on IBI metric and total scores for stream sites in two of Minnesota's major river basins, the St. Croix (n = 293 site visits) and Upper Mississippi (n = 210 site visits). We artificially removed rare taxa from biological samples by (1) separately excluding each individual taxon that fell within the lower 5% of rank abundance curves; (2) simultaneously excluding all taxa that had an abundance of one (singletons) or two (doubletons); and (3) simultaneously excluding all taxa that fell within the lower 5% of rank abundance curves. We then compared IBI metric and total scores before and after removal of rare taxa using the normalized root mean square error (nRMSE) and regression analysis. The difference in IBI metric and total scores increased as more taxa were removed. Moreover, when multiple rare taxa were removed, the nRMSE was related to sample abundance and to total taxa richness, with greater nRMSE observed in samples with a larger number of taxa or sample abundance. Metrics based on relative abundance of fish taxa were less sensitive to the loss of rare taxa, whereas those based on taxa richness were more sensitive, because taxa richness metrics give more weight to rare taxa compared to the relative abundance metrics.     

广西河池地区河流基于鱼类的生物完整性指数筛选及其环境质量评估

为促进生物完整性评价法在中国的应用,加强珠江上游广西河池地区河流环境质量监测,该研究以鱼类为研究对象,初步构建了包含21个指标在内的广西河池地区河流基于鱼类的生物完整性评价的指标体系。根据鱼类调查所收集数据,结合历史资料的记录,对这些指标进行筛选和赋值,最终确立了6个指标,用于建立适合广西河池地区河流的基于鱼类的生物完整性指标体系;应用此指标体系对该地区部分河流(河段)进行了评价。评价的结果表明,小环江鱼类完整性为好;红水河、龙江和大环江为一般;刁江为极差。评价的结果与河流受人为干扰的实际情况相吻合,研究构建的评价体系可供河池周边地区使用和借鉴。生物完整性评价是水域环境质量监测的重要手段,为使生物完整性评价更加科学和客观,应加强生物完整性与环境因子之间关系的研究。     

The ecology of rivers with contrasting flow regimes: identifying indicators for setting environmental flows

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Divergent reaction of fish metrics to human pressures in fish assemblage types in Europe

Using a large pan-European dataset, we compared least disturbed sites to sites impacted by human pressures across broad river types to assess which aspects of bio-ecological traits of the fish assemblage are most sensitive to alterations of the river ecosystem. To control for variation across river types and large-scale environmental gradients, we began by clustering the least disturbed sites (n = 716) into four homogenous fish assemblage types (FATs) differing by four fish metrics, i.e., lithophilic, rheophilic, omnivorous, and potamodromous fish. We predicted these FATs (headwater streams, medium gradient rivers, lowland rivers, and Mediterranean streams) using environmental variables, i.e., altitude, river slope, temperature, precipitation, latitude, and longitude for impacted sites in our dataset (n = 2,389). Using tests of sensitivity and intensity, 17 fish metrics showed a clear reaction to human pressures. However, 12 metrics responded exclusively within only one of the four FATs. Hence we observed a divergent reaction of fish metrics to human pressures in, e.g., headwater versus lowland rivers. Type-specific reactions are useful in customizing impact assessment for particular river types. It is of primary importance to understand the comparative sensitivity and efficiency of fish-based indicators of water quality for detecting human-induced degradation of river ecosystems.     

Development and validation of a fish-based index for the assessment of 'river health' in France

SUMMARY 1. In Europe, water policy is currently undergoing considerable change as emphasised by the recent European Water Framework Directive (WFD), which requires the restoration and maintenance of 'healthy' aquatic ecosystems by the assessment of their hydromorphological, chemical and biological characteristics. If the requirements of the WFD are to be met, effective biological tools are needed to measure the 'health' of rivers at scales large enough to be useful for management. These tools need to be ecologically based, efficient, rapid and applicable in different ecological regions. Among potential indicators, fish assemblages are of particular interest because of their ability to integrate environmental variability at different spatial scales. To meet the goals of the WFD, the French Water Agencies and the Ministry of the Environment initiated a research programme to develop a fish-based index that would be applicable nationwide.
2. A variety of metrics based on occurrence and abundance data and reflecting different aspects of the fish assemblage structure and function were selected from available literature and for their potential to indicate degradation.
3. Logistic and multiple linear regression procedures were applied, using an initial data set of 650 reference sites fairly evenly distributed across French rivers and defined by some easily measured regional and local characteristics, to elaborate the simplest possible response model that adequately explained the observed patterns of each metric for a given site.
4. Models obtained for each metric were validated using two independent data sets of 88 reference sites and 88 disturbed sites. These procedures allowed us to select the most effective metrics in discriminating between reference and disturbed sites.     

Long-term changes in ecosystem health of two Hudson Valley watersheds, New York, USA, 1936–2001

We examined long-term ecological change in two Hudson River tributaries, the Wappinger and Fishkill Creek watersheds in Dutchess County, New York State. Fish data spanning 65 years (1936, 1988, 1992, and 2001) and shorter term macroinvertebrate data (1988, 2001) were used to assess the influence of land use practices. Between 1988 and 2001, macroinvertebrate index Biotic Assessment Profile (BAP) improved by 113–165% in the Fishkill Creek watershed, and fish Index of Biotic Integrity (IBI) improved by 117–140%. Fish IBI and fish species richness were significantly different (p < 0.01) between the watersheds, with Wappinger Creek in better condition. Long-term fish IBI scores showed degradation in both watersheds since the 1930s. Changes in species composition suggest community homogenization on par with overall changes in the fish fauna of New York. Most notable were increases in tolerant species and declines in intolerant or moderately tolerant species. Whereas Fishkill Creek IBIs showed decline in 1988 relative to 1936, followed by improvement, Wappinger Creek declined monotonically in environmental quality. Development has intensified in both watersheds, but Fishkill Creek is improving while Wappinger Creek watershed is undergoing less mitigated degradation. We find that older, semi-quantitative data can be used to construct environmental quality indicators, and can be of great use for measuring long-term change.     

Key factors determining water quality,fish community dynamics,and the ecological health in an Asian temperate lotic system

Identifying the key determinants and their impacts on water quality and fish community structure is imperative to environmental assessment and ecosystem conservation. The main objectives of this study were to assess the factors driving water quality, fish assemblages, and ecological health in a temperate lotic ecosystem using a long-term (12 years) dataset. The results indicate that sewage treatment plants significantly negatively impact river water quality and are primary pollution sources. Temporal fluctuations showed that the summer monsoon adversely influenced TN and EC due to dilution effects while increasing the COD and TSS in the water. Annual variations and the Mann–Kendall test demonstrated increasing trends in COD, TN:TP ratio, and CHL-a but a decreasing trend of TP with the impoundment. Artificial barriers (weirs) in the river created more favorable algal growth conditions due to increased water residence time. COD and TSS levels in the river were significantly affected by soil erosion. The environmental disturbance measures index indicated that all sites were severely degraded. Fish composition analysis suggested that exotic fish species such as, Lepomis macrochirus and Micropterus salmoides, dominated the community structure and negatively impacted native species after the installation of weirs. Our findings indicate that fish guilds and the IBI model are controlled by nutrient enrichment, organic matter, algal production, and land use/land cover. Water quality governs the biological health of the river. Overall, evaluation of the river's ecological health based on the multi-metric WPI and the IBI revealed that the river has a “poor” to “very poor” ecological status. The outcomes of this study may aid policymakers in managing and restoring the river.     

Regional fish community indicators of landscape disturbance to catchments of the conterminous United States

Biological assessments of river conditions are increasingly conducted at regional and continental scales that match the extent of large-scale river management efforts. Multimetric indices composed of biological community indicators are commonly used to assess ecological condition and indices have recently been applied in large regions. Methods for large-scale multimetric index creation emphasize repeatability, comparability across regions, and objective selection of candidate metrics. Here we used an extensive fish dataset to create a large pool of fish community metrics which were screened to create multimetric indices (MMIs) in eight ecoregions covering the conterminous U.S. Candidate metrics were tested for metric range, corrected for natural gradients using boosted regression trees, and then tested for repeatability and sensitivity to landscape disturbance. Temporally stable and repeatable metrics were then evaluated for redundancy and used to compose MMIs for each region. Our MMIs were significantly correlated to independently developed MMIs, accurately reproducing prior index values with moderate to high precision and little bias. Our study demonstrates the utility of boosted regression tree models for correcting metric values for natural abiotic gradients and shows that the order of screening tests has a potentially important influence on metric selection. The resultant regional indices and component metrics provide a basis for assessing condition and testing hypotheses about landscape influences on aquatic ecosystems at a national scale in the US.     

Assessment of an index of biological integrity (IBI) to quantify the quality of two tributaries of river Chenab,Sialkot, Pakistan

Nullah Aik and Nullah Palkhu, two tributaries of river Chenab, were investigated for the assessment of fish habitat degradation as indicator of stream health. Fish abundance data were collected from 18 sites from September 2004 to April 2006 to develop multimetric indices for fish assemblage integrity and to detect the intensity of habitat degradation. A total of 12 metrics were calculated on the basis of taxonomic richness, habitat preference, trophic guild, stress tolerance and origin of species to develop stepped and continuous index of biological integrity (IBI) criteria. Cluster analysis (CA) classified sites based on species composition into three groups, viz., reference, moderately impaired and impaired groups. Non-metric multidimensional scaling (NMDS) was applied to identify underlying ecological gradient to highlight the habitat degradation. NMDS segregated two sites as less impaired, five sites as moderately impaired and eleven sites as impaired groups. Axes 1 and 2 explained a total variation of 53.3%. First axis explained the level of habitat impairment, whereas axis 2 indicated species richness along longitudinal gradient of streams. Sites located upstream of Nullah Aik showed higher IBI scores which dropped to its lowest in downstream sites near Sialkot city. Lowest values of IBI of sites in close proximity of city indicated the role of anthropogenic activities in catchment areas. The results indicated that variability in water chemistry can be related as a function of stream sites impairments (i.e., unimpaired, moderately impaired, and severely impaired). Water quality parameters showed strong correlation with IBI scores. Significantly negative correlation of IBI scores with COD, TDS, turbidity, Fe, Cr, Zn and positive correlation with DO and pH was found. The results can be used for restoration and future management of small streams passing through urban areas of Pakistan. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. A. Cambray