Habitat variables determining the occurrence of large benthic foraminifera in the Berau area (East Kalimantan, Indonesia)

Knowledge of the assemblage composition of large benthic foraminifera (LBF) in relation to environmental conditions is needed to interpret fossil records. In this study the assemblage composition of LBF is described for a carbonate shelf with a barrier reef system and some reefs outside the barrier. In a total of 140 samples, 34–35 species of LBF were found. Four clusters, roughly corresponding to substrate type were identified. Several small groups of samples were recognized that were collected locally inside, on, or outside the barrier. Microscale environmental gradients within the substrate or in the benthic boundary layer resulted in spatial differentiation of the microhabitat of each species.     

The specific inherent optical properties of three sub-tropical and tropical water reservoirs in Queensland, Australia

The underwater light climate, which is a major influence on the ecology of aquatic systems, is affected by the absorption and scattering processes that take place within the water column. Knowledge of the specific inherent optical properties (SIOPs) of water quality parameters and their spatial variation is essential for the modelling of underwater light fields and remote sensing applications. We measured the SIOPs and water quality parameter concentrations of three large inland water impoundments in Queensland, Australia. The measurements ranged from 0.9 to 42.7 μg l⁻¹ for chlorophyll a concentration, 0.9–170.4 mg l⁻¹ for tripton concentration, 0.36–1.59 m⁻¹ for a _CDOM(440) and 0.15–2.5 m for Secchi depth. The SIOP measurements showed that there is sufficient intra-impoundment variation in the specific absorption and specific scattering of phytoplankton and tripton to require a well distributed network of measurement stations to fully characterise the SIOPs of the optical water quality parameters. While significantly different SIOP sets were measured for each of the study sites the measurements were consistent with published values in other inland waters. The multiple measurement stations were allocated into optical domains as a necessary step to parameterise a semi-analytical inversion remote sensing algorithm. This article also addresses the paucity of published global inland water SIOP sets by contributing Australian SIOP sets to allow international and national comparison.     

The carbon content characteristics of tropical peats in Central Kalimantan, Indonesia: Estimating their spatial variability in density

Clarification of carbon content characteristics, on their spatial variability in density, of tropical peatlands is needed for more accurate estimates of the C pools and more detailed C cycle understandings. In this study, the C density characteristics of different peatland types and at various depths within tropical peats in Central Kalimantan were analyzed. The peatland types and the land cover types were classified by land system map and remotely sensed data of multi-temporal AVHRR composites (1-km pixel size), respectively. Differences in the mean values of volumetric C density (CD_V) were found among peatland types owing to the variability in physical consolidation from peat decomposition or nutrient inputs, although no vertical trends of CD_V were found. Using a step-wise regression technique, geographic variables and the categories of peatland type and land cover type were found to explain 54% of the variability of CD_V within tropical peatlands in some conditions.     

Modelling ranging behaviour of female orang-utans: a case study in Tuanan,Central Kalimantan,Indonesia

Quantification of the spatial needs of individuals and populations is vitally important for management and conservation. Geographic information systems (GIS) have recently become important analytical tools in wildlife biology, improving our ability to understand animal movement patterns, especially when very large data sets are collected. This study aims at combining the field of GIS with primatology to model and analyse space-use patterns of wild orang-utans. Home ranges of female orang-utans in the Tuanan Mawas forest reserve in Central Kalimantan, Indonesia were modelled with kernel density estimation methods. Kernel results were compared with minimum convex polygon estimates, and were found to perform better, because they were less sensitive to sample size and produced more reliable estimates. Furthermore, daily travel paths were calculated from 970 complete follow days. Annual ranges for the resident females were approximately 200 ha and remained stable over several years; total home range size was estimated to be 275 ha. On average, each female shared a third of her home range with each neighbouring female. Orang-utan females in Tuanan built their night nest on average 414 m away from the morning nest, whereas average daily travel path length was 777 m. A significant effect of fruit availability on day path length was found. Sexually active females covered longer distances per day and may also temporarily expand their ranges.     

Diversity and community composition of butterflies and odonates in an ENSO-induced fire affected habitat mosaic: a case study from East Kalimantan, Indonesia

Little is known about the diversity of tropical animal communities in recently fire‐affected environments. Here we assessed species richness, evenness, and community similarity of butterflies and odonates in landscapes located in unburned isolates and burned areas in a habitat mosaic that was severely affected by the 1997/98 ENSO (El Niño Southern Oscillation) event in east Kalimantan, Indonesian Borneo. In addition related community similarity to variation in geographic distance between sampling sites and the habitat/vegetation structure Species richness and evenness differed significantly among landscapes but there was no congruence between both taxa. The species richness of butterflies was, for example, highest in sites located in a very large unburned isolate whereas odonate species richness was highest in sites located in a small unburned isolate and once‐burned forest. We also found substantial variation in the habitat/vegetation structure among landscapes but this was mainly due to variation between unburned and burned landscapes and variation among burned landscapes. Both distance and environment (habitat/vegetation) contributed substantially to explaining variation in the community similarity (beta diversity) of both taxa. The contribution of the environment was, however, mainly due to variation between unburned and burned landscapes, which contained very different assemblages of both taxa. Sites located in the burned forest contained assemblages that were intermediate between assemblages from sites in unburned forest and sites from a highly degraded slash‐and‐burn area indicating that the burned forest was probably recolonised by species from these disparate environments. We, furthermore, note that in contrast to species richness (alpha diversity) the patterns of community similarity (beta diversity) were highly congruent between both taxa. These results indicate that community‐wide multivariate measures of beta diversity are more consistent among taxa and more reliable indicators of disturbance, such as ENSO‐induced burning, than univariate measures.     

Challenges of a transition to a sustainably managed shrimp culture agro-ecosystem in the Mahakam delta,East Kalimantan,Indonesia

Around 1990, when in other countries mangrove protection took off, massive conversion of mangrove forest into shrimp ponds started in the Mahakam delta. To identify constraints to and options for sustainable management we analysed institutions and constraints with stakeholders. In 3 sites we used participatory tools and a complementary survey to assess the livelihood framework. Since 1970, ponds for shrimp farming gradually replaced 75% of mangrove forested area. After 2004, recovery of mangrove took off, as, mainly due to low shrimp yields, ponds were abandoned. In 2008, 54% of the delta was dedicated to ponds for shrimp production. Around 80% of livelihood activities of pond-farmers, pond caretakers, and fishermen was related to mangroves. The involvement of men and women in these activities varied between sites and types. Poor households depended more on mangroves. Most activities resulted in seasonal income peaks; only a few activities resulted in a full daily livelihood. Ponds, on the other hand, provide 50% of households’ livelihood, but this remains vulnerable in the context of the risky shrimp production. Skewed land holding, unequal sharing of benefits, competing claims and vested interests of stakeholders pose a great challenge to a transition to a more sustainable use of the mangrove area. In particular, ponds located on peat soils are non-sustainable and would require full restoration into mangrove; ponds on other soils could best be transformed into a mixed mangrove-pond system using a ‘green-water’ technology.     

Unusual links between inherent and apparent optical properties in shallow lakes,the case of Taihu Lake

The spectral distribution of downwelling solar irradiance is an important factor in the radiative balance, primary productivity and biogeochemistry in most lakes. In the present study, we show the relative importance of different inherent and apparent optical properties in controlling the spectral attenuation of diffuse downwelling irradiance in a large shallow lake in eastern China. Most importantly, we show how elevated concentrations of suspended matter not only increase attenuation, but are linked to a “spectral shift” in major attenuation peaks, with important consequences on biogeochemical processes and remote sensing. The analysis of the lake optical properties in relation to the geographical distribution of submerged macrophytes indicates how heterogenic optical conditions play a role in controlling benthic primary production.     

Effects of fire and selective logging on the tree species composition of lowland dipterocarp forest in East Kalimantan, Indonesia

Tree species composition (diameter at breast height (dbh) 10 cm) was studied in primary, selectively logged and heavily burnt forests in East Kalimantan, Indonesia. The number of trees, tree species, and the Fishers's- diversity index were determined for the first 15 years (burnt forest) and 25 years (selectively logged forest) after disturbance. Additionally the population structure of six common and typical Macaranga pioneer tree species was compared through time between selectively logged, burnt and primary forest. Both selectively logged and burnt forest showed a significant reduction in number of trees and tree species per surface area directly after disturbance. Fire especially affected dominant tree species, while for selective logging the opposite was observed. In selectively logged forest the number of trees, tree species and the Fishers's- index reached pre-disturbance levels within c. 15 years. For burnt forest, only the number of trees recovered to pre-disturbance levels. The number of tree species stayed constant after disturbance, while the Fishers's- index decreased. The six studied Macaranga pioneer tree species seedlings were present in all forest types. Their density seems to be unrelated to light levels in the forest understorey but strongly related to the number of mature parent trees. Their sapling densities were strongly related to light levels in the forest understorey. The studied Macaranga species formed an important part of both under- and over-storey in burnt forest 15 years after disturbance, while they were almost absent in the understorey and only moderately common in the overstorey of selectively logged forest.     

Understanding the murky history of the Coral Triangle: Miocene corals and reef habitats in East Kalimantan (Indonesia)

Studies on ancient coral communities living in marginal conditions, including low light, high turbidity, extreme temperatures, or high nutrients, are important to understand the current structure of reefs and how they could potentially respond to global changes. The main goal of this study was to document the rich and well-preserved fossil coral fauna preserved in Miocene exposures of the Kutai Basin in East Kalimantan, Indonesia. Our collections include almost forty thousand specimens collected from 47 outcrops. Seventy-nine genera and 234 species have been identified. Three different coral assemblages were found corresponding to small patch reefs that developed under the influence of high siliciclastic inputs from the Mahakam Delta. Coral assemblages vary in richness, structure, and composition. Platy coral assemblages were common until the Serravallian (Middle Miocene), while branching coral assemblages became dominant in the Tortonian (Late Miocene). By the late Tortonian massive coral assemblages dominated, similar to modern-style coral framework. Our results suggest that challenging habitats, such as the Miocene turbid habitats of East Kalimantan, might have played an important role during the early diversification of the Coral Triangle by hosting a pool of resilient species more likely to survive the environmental changes that have affected this region since the Cenozoic. Further research that integrates fossil and recent turbid habitats may provide a glimpse into the dynamics and future of coral reefs as “typical” clear-water reefs continue to decline in most regions.     

Optical properties and optical constituents of the Faroe Islands shelf and off-shelf waters,North East Atlantic

The study comprises a data set of CTD, optical properties—K ₀(PAR), c _p, a(PAR), b(PAR)—and optical constituents—Chl a, SPM, CDOM—from 72 shelf and off-shelf stations in the Faroe Islands (62°N, 7°W) North East Atlantic, in early spring 2005. Results showed that shelf waters surrounding the islands were cold and low saline, whereas off-shelf waters were warmer (~1°C) and more saline (~0.05) PSU. A pronounced oceanographic front separated the two waters, and diffuse light attenuation K ₀(PAR), beam attenuation c _p, Chl a, absorption a(PAR), and scattering coefficient b(PAR) were all significantly higher on the shelf. Analyses showed that off-shelf light attenuation K ₀(PAR) was governed by Chl a, shown by a high (r ² = 0.64) Chl a–K ₀(PAR) correlation, whereas light attenuation on the shelf was governed by both Chl a, SPM, and CDOM in combination. A Chl a specific diffuse attenuation coefficient K₀^* ( textPAR ) K_{0}^{*} left( {text{PAR}} right) of 0.056 (m² mg⁻¹ Chl a) and a Chl a specific beam attenuation ( c_textp^* c_{text{p}}^{*} ) of 0.27 (m² mg⁻¹ Chl a) coefficients were derived for the off-shelf. It is pointed out that Chl a is the single variable that changes over time as no rivers with high SPM and CDOM enter the shelf area. Data were obtained in early spring, and Chl a concentrations were low ~0.5 mg Chl a m⁻³. Spring bloom Chl a are about 10 mg Chl a m⁻³ and estimations showed that shelf K ₀(PAR) will increase about 5 times and beam attenuation about 10 times. The Faroe Islands shelf–off-shelf waters is a clear example where physical conditions maintain some clear differences in optical properties and optical constituents. The complete data set is enclosed.     

Foraging in tropical rain forests: The case of the penan of Sarawak,East Malaysia (Borneo)

Bailey et al. (1989) and Headland (1987) have recently proposed hypotheses stating that human foragers are unable to live in undisturbed tropical rain forests without some reliance on cultivated foods. The present discussion considers these hypotheses, as well as some of the evidence by which they have been tested. Four conceptual problems in the way these hypotheses have been formulated are identified: (1) assumptions about the relationship between key features of tropical forest ecosystems and human subsistence potential, (2) in-consistencies in the definition of pure foraging, (3) adherence to a dichotomy between foraging and agriculture, the result being that conscious and unconscious effects of exploitation on the demographic parameters of key resources is ignored, and (4) problems in defining the significance of ecotones. I consider the case of Penan hunter-gatherers of Borneo, a population which, by virtue of their reliance on the sago palm Eugeissona utilis, contradicts the conclusions of Bailey et al. and Headland. I consider salient aspects of Penan reliance on Eugeissona, and describe how Penan exploitation of this resource may positively effect its availability. This case is seen to provide a challenge to the hypotheses of Bailey et al. and Headland, not only in the extent to which it contradicts their conclusions but, more significantly, in what it reveals about the assumptions upon which their hypotheses are based. This points to the need for greater precision in the definition of future hypotheses about foraging in tropical forests.     

Observation of anoxic water mass in a tropical reservoir: the Cirata Reservoir in Java,Indonesia

We conducted a transect survey of water quality and bottom sediments in a large tropical reservoir, the Cirata Reservoir, located on the Citarum River, West Java, Indonesia. In the main basin of this reservoir, the surface water contained high concentrations of chlorophyll a, up to 48 μg l⁻¹, and most of the water body was occupied by thick anoxic water. The thickness of the surface oxygenated water was only 5–7 m, whereas that of the anoxic water mass was more than 70 m. The concentrations of phosphate and ammonia were quite high in the anoxic hypolimnion. The reasons for the formation of the huge anoxic water mass include the oligomictic status of circulation, a relatively weak mixing caused by topography, high hypolimnion temperature, and high loads of organic matter. The carbon/nitrogen (C/N) ratios and the carbon stable isotope ratios of sediments indicated that the major source of organic carbon in the sediments was algal production in the reservoir and fish culture activity. The mechanism of eutrophication in the reservoir is also discussed.     

Geochemical cycling of heavy metals in a marine coastal area: benthic flux determination from pore water profiles and in situ measurements using benthic chambers

Concentrations of the heavy metals Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were measured in sea water, suspended matter, sediments and pore water samples collected in a coastal area of the middle Tyrrhenian Sea. Concentration factors between pore water (extracted from the first centimeter of the sediments) and the overlying sea water (taken 30 cm above the sea bed) were less than 1 for Cr, Cu and Pb, 1–10 for Cd and Ni, 10–100 for Fe and Co, 100–1000 for Mn, and 1–100 for Zn.The benthic fluxes of heavy metals at the sediment-water interface were measured directly using in situ benthic chambers and calculated using Fick's first law during two experimental periods, one in 1986 and the other in 1988. The fluxes of Cu, Ni, Pb and Zn varied significantly over time; this appeared to be related to their relatively low ( 10) concentration factors. From the benthic chamber experiments, metals with positive fluxes were in the order: Mn > Fe > Co > Cd, while those with negative fluxes were: Zn > Pb > Ni Cu. Fluxes calculated using Fick's Law were: positive – Mn > Fe > Zn (or Zn > Fe) > Ni > Co > Cd, negative fluxes Pb > Cu > Cr.Measured (benthic chamber) and calculated (Fick's first law) fluxes for Co, Cd, Mn, Pb and Fe were comparable within an order of magnitude, although less agreement was found for Cu, Ni and Zn. Removal of Ni and Zn at the sediment-water interface has been proposed to explain the fact that the measured and calculated fluxes have opposite directions for these metals.     

Ecological restoration of a severely degraded coastal acid sulfate soil: A case study of the East Trinity wetland,Queensland

A severely degraded acid sulfate soil wetland near Cairns, Queensland, has been returned to a functional estuarine habitat using a cost‐effective, low‐technology method based on the reintroduction of tidal water. Gradual increases in tidal inundation, combined with targeted liming of the tidal stream, restored conditions that promoted chemical and microbial processes leading to the rapid recolonisation of mangrove communities and other estuarine flora and fauna. Protocols and understanding developed at East Trinity can be readily applied to other coastal acid sulfate soil sites.     

The annual cycle of primary productivity in a tropical estuary: the inner regions of the Golfo de Nicoya, Costa Rica

A one year cycle of primary productivity (PP) was studied using the "light and dark bottle" technique in the Golfo de Nicoya, located at 10 degrees N and 85 degrees W at the Pacific coast of Costa Rica. Samples were always incubated at 0, 1, 2, 3 and 4 m depth for 5 hrs from 8:30 till 13:30. The measurements were performed twice per month, first around high tide and one week later at low tide to account for tidal influences. This routine study was supplemented by special measurements about regional and short-term variations of primary productivity using the 14C-method, which mainly served to account for the shortcomings of the routinely employed incubation technique. The upper Golfo de Nicoya is an extremely productive, phytoplankton dominated estuarine system with an annual gross PP of 1037, a net PP of 610 and a community respiration of 427 g C m(-2) a(-1). Highest monthly PP values occurred during the dry season and at the beginning of the rainy season. Peaks in primary productivity coincided with massive blooms of red tide forming algae. Internal biological dynamics, estuarine circulation and land run-off are the most important nutrient sources. High water turbidity reduces the euphotic layer to 4-5 m depth, making the underwater light regime the rate limiting factor. On an annual basis, 41% of the organic carbon produced in the system is already consumed in the euphotic layer. Considering the entire water column (mean depth at mean tidal water level is around 7.7 m) 79% is consumed in the pelagial. Taking into account the organic material consumed and stored in the sediments the carbon budget of the upper gulf is probably balanced. Since, however, the system receives a considerable amount of organic material from its terrestrial surroundings (especially from the mangrove forests), a surplus of organic carbon is exported from the upper Golfo de Nicoya, which enhances the overall water productivity of the lower gulf and the adjacent area.     

Growth, mortality and stock assessment of kelee shad, Hilsa kelee (Fam: Clupeidae) in the coastal waters of Pakistan

Growth of kelee shad, Hilsa kelee, in the coastal waters of Pakistan was estimated from the lengthfrequency samples. The von Bertalanffy growth equation was L _t = 23.10 (1 ? exp (?0.94(t + 0.18))). Estimated parameters of total mortality (Z), natural mortality (M) and fishing mortality (F) were 2.08 year^?1, 1.78 year^?1, and 0.30 year^?1 respectively. The length-at-first capture was Lc = 10.88 cm. Biomass per recruitment (B/R) and yield per recruitment (Y′/R) were 0.87 and 0.031 respectively. The annual exploitation rate was U = 0.12. The exploitation ratio for maximum yield per recruit E _max = 0.73 and fishing mortality for maximum yield per recruit F _max = 1.52; biological reference point F _opt = 0.89 year^?1 and F _limit = 1.18 year^?1. Present estimations showed that the natural mortality was higher than fishing mortality in Hilsa kelee, indicating that the state of the stock is sustainable and the fishery of kelee shad should not be increased beyond current levels in the coastal waters of Pakistan.     

Conservation in tropical landscape mosaics: the case of the cacao landscape of southern Bahia, Brazil

A recent debate has contrasted two conservation strategies in agricultural landscapes; either “land sparing” farm development combining intensive production practices with forest set-asides, or “wildlife-friendly” farming with greater on-farm habitat value but lower yields. We argue that in established mosaic landscapes including old cacao production regions where natural forest has already been reduced to relatively small fragments, a combination of both strategies is needed to conserve biodiversity. After reviewing the evidence for the insufficiency of either strategy alone if applied to such landscapes, the paper focuses on the cacao production landscape of southern Bahia, Brazil, once the world’s second largest cacao producer. Here, small remaining areas of Atlantic Forest are embedded in a matrix dominated by traditional cacao agroforests, resulting in a landscape mosaic that has proven favorable to the conservation of the region’s high biodiversity. We show that current land use dynamics and public policies pose threats but also offer opportunities to conservation and describe a three-pronged landscape conservation strategy, consisting of (i) expansion of the protected areas system, (ii) promotion of productive yet biodiversity-friendly cacao farming practices, and (iii) assistance to land users to implement legally mandated on-farm reserves and voluntary private reserves. We discuss recent experiences concerning the implementation of this strategy, discuss likely future scenarios, and reflect on the applicability of the Bahian experience to biodiversity rich cacao production regions elsewhere in the tropics.