Fish Communities of the Sacramento River Basin: Implications for Conservation of Native Fishes in the Central Valley, California

The associations of resident fish communities with environmental variables and stream condition were evaluated at representative sites within the Sacramento River Basin, California between 1996 and 1998 using multivariate ordination techniques and by calculating six fish community metrics. In addition, the results of the current study were compared with recent studies in the San Joaquin River drainage to provide a wider perspective of the condition of resident fish communities in the Central Valley of California as a whole. Within the Sacramento drainage, species distributions were correlated with elevational and substrate size gradients; however, the elevation of a sampling site was correlated with a suite of water-quality and habitat variables that are indicative of land use effects on physio-chemical stream parameters. Four fish community metrics – percentage of native fish, percentage of intolerant fish, number of tolerant species, and percentage of fish with external anomalies – were responsive to environmental quality. Comparisons between the current study and recent studies in the San Joaquin River drainage suggested that differences in water-management practices may have significant effects on native species fish community structure. Additionally, the results of the current study suggest that index of biotic integrity-type indices can be developed for the Sacramento River Basin and possibly the entire Central Valley, California. The protection of native fish communities in the Central Valley and other arid environments continues to be a conflict between human needs for water resources and the requirements of aquatic ecosystems; preservation of these ecosystems will require innovative management strategies.     

Fish community structure and environmental correlates in the highly altered southern Sacramento-San Joaquin Delta

We sampled 11 sites in the southern Sacramento-San Joaquin Delta from 1992–1999, to characterize fish communities and their associations with environmental variables. Riparian habitats were dominated by rock-reinforced levees, and large water diversion facilities greatly influenced local hydrodynamics and water quality. We captured 33 different taxa, only eight of which were native. None of the native species represented more than 0.5% of the total number of individuals collected. The abundance of native species was consistently low but typically peaked during high outflow periods. Fish communities were predominantly structured along environmental gradients of water temperature and river flow. Native species (tule perch, Hysterocarpus traski, & Sacramento sucker, Catostomus occidentalis) were associated with conditions of high river flow and turbidity, while the majority of the non-native species were associated with either warm water temperature or low river flow conditions. The exceptions were the non-native striped bass, Morone saxatilis, and white catfish, Ameiurus catus, which were positively associated with relatively high river flow. Variation in fish community structure was greater among river locations within years than within river locations among years, thus fish communities at each river location were consistently different each year. Differences in fish communities among river locations were correlated with river flow and turbidity. We predict that the fish communities of this region will remain numerically dominated by non-native species if the environmental conditions we observed persist in the future.     

太湖水质评价中底栖动物综合生物指数的筛选及生物基准的确立

对太湖8个区域共60样点进行底栖大型无脊椎动物采样,共获得底栖动物24种,其中软体动物14种,节肢动物5种,甲壳动物5种.根据Hilsenhoff 生物指数确定了15个相对清洁的样点和45个污染样点,然后进行21种生物指数的综合评估,结果表明,总分类单元数、(甲壳动物 软体动物)分类单元数、%(甲壳动物 软体动物)、%腹足纲、Goodnight-Whitley指数、Hilsenhoff 生物指数和%直接收集者等7个底栖动物生物指数可以用作判别太湖水质的敏感生物指数.通过5, 3, 1记分法对6种生物指数统一量纲后,获得变化范围为7～35的综合生物指数,运用四分法划分了太湖水质判别的生物基准:7～14很差,15～21差,22～28一般,29～35好,并对60个样点进行重新记分,获得了太湖水质的基本生态分区现状,太湖的东南区属水质较好的区域,而西北区属水质较差的区域.该水质生物基准基本适合评价太湖不同区域的水质状况.     

Water quality and the distribution of some fishes in an area of acid sulphate soils,Kalimantan, Indonesia

The drainage from acid sulphate soils severely affects water quality, with pH values commonly around 3, and toxic concentrations of ferrous iron and aluminium. The water quality in an area of acid sulphate soils on the southern coastal plain of Kalimantan, Indonesia, was examined and an inventory of fish species was made. The ionic composition of the water can be described as a simple dilution series of the hypothetical mineral Fe(II)₄Na₈Ca₂Mg₆Al₄H₁₀(SO₄)₂₇, originating from the oxidation of pyrite and weathering products of clay minerals. The oxygen concentrations were variable, ranging from <10% to >100% saturation, without a clear relation to ionic concentrations. Fish were encountered over the entire pH range of 2.8–5.2. Although species distribution showed some correlation with water quality, the species showed widely overlapping ranges, and they are not suitable for use as indicator organisms on the present detailed scale. The most likely explanation for the poor correlation between fish distribution and water quality are seasonal and local fluctuations in quality. These presumably eliminated the more sensitive species, and only those with a high acidity tolerance were found in the area.     

Decline of Native Freshwater Fishes in a Mediterranean Watershed on the Iberian Peninsula: A Quantitative Assessment

We examined changes in the distribution of 9 native and 18 introduced freshwater fishes in the south-eastern Pyrenees watershed, Iberian Peninsula, using data from 1996, 1984–1988 and historical information. This region suffers many modifications to its freshwater ecosystems that are linked to human activity in the Mediterranean regions. Fish communities, stream physical habitat and environmental degradation were assessed at 168 sites from 11 basins in 1996. Seven native species (78%) showed decline from previous data, one of which became extirpated in the first half of the 20th century. On the other hand, introduced species are expanding. As a consequence, intact native communities are increasingly rare, declining from presence in 22% of river courses in 1984–1988 to 15% in 1996. The most typical community type is a mixture of native and introduced species occupying 30% of river courses. Stream degradation seems to be the main cause of this process because fish communities differed between degraded streams and streams suffering less impact. A principal component analysis showed that water pollution and modifications to the habitat were the two anthropogenic factors that accounted for most changes in the fish community integrity. Habitat alteration, primarily through construction of dams and water diversions, has fragmented habitats and isolated native fish communities in headwater streams. Current protection measures do not offer effective conservation of threatened species and communities. A global conservation and restoration programme from an ecosystem-based approach is essential to reverse the trend affecting native freshwater fishes in this Mediterranean region.     

Effects of land use on water quality and aquatic biota of three North Carolina Piedmont streams

Three streams in the Piedmont ecoregion of North Carolina were studied to evaluate the effect of land use (forested, agricultural, urban) on water quality and aquatic biota. In comparison with the forested stream, there were few changes in water quality at the agricultural and urban streams. Suspended-sediment yield was greatest for the urban catchment and least at the forested catchment. Suspended-sediment concentrations during storm events followed this same pattern, but at low-moderate flows suspended-sediment concentrations were greatest at the agricultural site. Most nutrient concentrations were highest at the agricultural site, and the amount of available dissolved nitrogen was elevated at both the urban and agricultural sites. High concentrations of metals (totals) in the water column were sometimes observed at all sites, but maximum average concentrations were recorded at the urban site (especially Cr, Cu, and Pb). Maximum sediment metal concentrations, however, were not found at the urban site, but were usually recorded at the forested site. Only minor differences were noted between fish communities of the forested and agricultural sites, although both abundance and average size of some species increased at the agricultural site. The fish community at the urban site was characterized by low species richness, low biomass, and the absence of intolerant species.Invertebrate taxa richness, a biotic index, and the number of unique invertebrate species (found at only one site) indicated moderate stress (Fair water quality) at the agricultural site and severe stress (Poor water quality) at the urban site. At the agricultural site, declines in taxa richness within intolerant groups were partially offset by increases within tolerant groups. The agricultural stream had the highest abundance values, indicating enrichment. The urban site, however, was characterized by low species richness for most groups and very low abundance values. Analysis of seasonal patterns suggested detritus was the most important food source for invertebrates in the forested stream, while periphyton was of greater importance in the agricultural stream. Dominant macroinvertebrate groups shifted from Ephemeroptera at the forested site, to Chironomidae at the agricultural site, and Oligochaeta at the urban site. There was little between-site overlap in dominant species (8–7%), indicating that land use strongly influenced the invertebrate community. Chemical and physical parameters measured at the three sites did not seem sufficient to account for all of the observed differences in the invertebrate communities, suggesting some unmeasured toxicity. Biological measurements, especially macroinvertebrates community structure, consistently indicated strong between-site differences in water and habitat quality.     

Relationships between the Seasonal Variations of Macroinvertebrates,and Land Uses for Biomonitoring in the Xitiaoxi River Watershed,China

The impacts of differences in watershed land uses, and differences in seasonality on benthic macroinvertebrate communities, were evaluated in 12 stream sites within the Xitiaoxi River watershed, China, from April 2009 to January 2010. The composition of macroinvertebrate community differed significantly among three land use types. Forested sites were characterized by high taxa richness, diversity and the benthic‐index of biotic integrity (B‐IBI), while farmland and urban disturbed stream sites presented contrary patterns. The percentage of urban land use, conductivity, dissolved oxygen, ammonia nitrogen and total phosphorus were the major drivers for the variations. The land use related water quality stress gradients of the four sampling seasons were determined by means of four independent Principal Component Analyses. The responses of macroinvertebrate community metrics, to anthropogenic stressors, were explored using Spearman Rank Correlation analyses. All the selected metrics, including total numbers of taxa, numbers of Ephemeroptera, Plecoptera and Trichoptera taxa, percentage of non‐insect abundance, percentage of scrapers abundance, Pielou’s evenness index, Simpson diversity index, and the Benthic Index of Biotic Integrity were correlated significantly with environmental gradients (PC1) in autumn. In other seasons such correlations were less pronounced. Our results imply that autumn is the optimal time to sample macroinvertebrate communities, and to conduct water quality biomonitoring in this subtropical watershed. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Impacts of bleak (Alburnus alburnus) and roach (Rutilus rutilus) on water quality,sedimentation and internal nutrient loading

Lake Vesijärvi, southern Finland, suffered sewere eutrophication by sewage effluent from the city of Lahti during the 1960's and the early 1970's. The municipal sewage loading was diverted from the lake in 1976 and the lake started to recover. However, in the 1980's blue-green algal blooms increased again and the recovery of the lake faded. Enclosure experiments demonstrated that high roach (Rutilus rutilus) biomass is one of the key factors in the fading recovery of the lake. In this study, the influence of roach and another cyprinid fish species (bleak, Alburnus alburnus) to planktonic algal productivity and biomass in Lake Vesijärvi was examined. Enclosure experiments in the field showed the impacts of planktivorous bleak on water quality; in an enclosure with a density of 1 fish m^–2 average daily algal production (1370 mg C m^–2) and chlorophyll-a concentration (50–90 µg 1^–1) were more than twice that in an enclosure without fish. Laboratory experiments showed that the availability of planktonic food affects the foraging behaviour of roach and consequently the internal nutrient loading from the sediment into the water. Roach caused the highest phosphorus loading and turbidity when there was no zooplanktonic food available in the water. The possible interactions between planktivorous and omnivorous fish species are discussed.     

A fish-based index for the assessment of the ecological quality of temperate lakes

A fish – based index for the assessment of the ecological quality of natural temperate lakes was developed, in accordance to the requirements of the Water Framework Directive (WFD) 2000/60/EC. As a case study, 11 natural lakes located at northern and western Greece were selected. Fish surveys were conducted during mid summer to mid autumn in 2010, 2011 and 2012 using Nordic gillnets and electrofishing. Environmental parameters and anthropogenic pressures were assessed for each lake. Fish species richness, abundance, trophic, reproductive and habitat functional guilds were used for extracting a set of 107 metrics, meeting the requirements of the WFD. All metrics were initially tested as candidates for the index development. A stepwise linear regression of each metric against environmental parameters (lake area, altitude, maximum depth, alkalinity) and anthropogenic pressures (drainage area covered by non-natural land uses – NNLC, water total phosphorus concentrations – TP, Lake Habitat Modification Score – LHMS) was initially conducted for ensuring pressure-response relationships. Reference conditions for each lake were estimated by the hindcasting procedure and the ecological quality for each lake was expressed as the ecological quality ratio (EQR) by a value ranging from 0 (poor quality) to 1 (excellent quality). Two fish fauna metrics, the relative numerical abundance of introduced species (Introduced_a) and the relative biomass of omnivorous species (OMNI_b) were finally extracted as the most significant, responding to LHMS and TP, respectively. The final index was expressed as the mean values of the EQRs of these two metrics. The multimetric fish index presented herein could serve as a tool for assessing the ecological quality of natural lakes at broad geographical scale and generally, in the Mediterranean temperate lakes with similar hydromorphological characteristics.     

Quantifying tolerance indicator values for common stream fish species of the United States

The classification of fish species tolerance to environmental disturbance is often used as a means to assess ecosystem conditions. Its use, however, may be problematic because the approach to tolerance classification is based on subjective judgment. We analyzed fish and physicochemical data from 773 stream sites collected as part of the U.S. Geological Survey's National Water-Quality Assessment Program to calculate tolerance indicator values for 10 physicochemical variables using weighted averaging. Tolerance indicator values (TIVs) for ammonia, chloride, dissolved oxygen, nitrite plus nitrate, pH, phosphorus, specific conductance, sulfate, suspended sediment, and water temperature were calculated for 105 common fish species of the United States. Tolerance indicator values for specific conductance and sulfate were correlated (rho = 0.87), and thus, fish species may be co-tolerant to these water-quality variables. We integrated TIVs for each species into an overall tolerance classification for comparisons with judgment-based tolerance classifications. Principal components analysis indicated that the distinction between tolerant and intolerant classifications was determined largely by tolerance to suspended sediment, specific conductance, chloride, and total phosphorus. Factors such as water temperature, dissolved oxygen, and pH may not be as important in distinguishing between tolerant and intolerant classifications, but may help to segregate species classified as moderate. Empirically derived tolerance classifications were 58.8% in agreement with judgment-derived tolerance classifications. Canonical discriminant analysis revealed that few TIVs, primarily chloride, could discriminate among judgment-derived tolerance classifications of tolerant, moderate, and intolerant. To our knowledge, this is the first empirically based understanding of fish species tolerance for stream fishes in the United States.     

基于B-IBI指数的温榆河生态健康评价

基于温榆河底栖动物和水质采样数据,采用底栖动物完整性指数(B-IBI)方法,进行温榆河生态健康评价,并探求河流水质与B-IBI指数的相关性。通过分布范围、判别能力以及相关性分析等,确定研究区B-IBI指标体系,包括总分类单元数、总生物量、优势分类单元个体相对丰度、敏感类群分类单元数、生物指数和粘附者个体丰度6个指标。根据参照点25%分位数确定温榆河底栖动物完整性评价标准,即B-IBI>1.821为健康,1.366—1.821为亚健康,0.910—1.366为一般,0.455—0.910为较差,0—0.455为极差。结果表明,温榆河27.3%河段处于健康状态,9.1%河段处于亚健康状态,13.6%河段处于一般状态,50%河段处于较差和极差状态。河流水质与B-IBI指数的相关系数为-0.549,表明生物指标作为水体评价的补充指标十分必要。     

Stream Fish Communities and Environmental Correlates in the Red River of the North, Minnesota and North Dakota

In the Red River of the North (Red River) drainage in Minnesota and North Dakota, there are strong east–west hydrological and chemical environmental gradients. Historical fish surveys indicated the presence of species with both widespread and restricted distributions, leading to unique fish communities in several streams. To determine the important physiochemical correlates of stream fish community structure, we partitioned 25 streams into 46 large reaches by ecoregion classification. The reaches were then characterized from sampling during 1962–1994 by the frequency of occurrence of 76 fish species and 12 landscape-level hydrologic and chemical factors. In canonical correspondence analysis, the first two axes explained 56% of the species–environment relationship, and indicated that coefficient of variation of mean monthly discharge, minimum discharge in May, and residue were the most important factors correlated with fish community composition. Important covariates of residue were specific conductance, dissolved sulfate, and total hardness of waters. Certain catostomids, Hypentelium nigricans and Moxostoma valenciennesi, cyprinids, Notropis anogenus and N. texanus, ictalurids, Ameiurus natalis, and percids, Etheostoma caeruleum and E. microperca, all correlated highly with habitats characterized by low-flow variability, high discharges, and low residue, conductivity, and hardness. Reaches with these characteristics included the Otter Tail River in the Red River Valley, North Central Hardwoods (NCH), and the Northern Minnesota Wetlands (NMW) ecoregions; the Pelican River in the NCH ecoregion; and the Red Lake River in the NMW ecoregion. The results of this analysis support the hypothesis that regional environmental conditions are important in structuring fish communities in northern streams. As conditions are altered in the future by anthropogenic factors at the landscape scale, our exploratory multivariate model can be used to predict fish community response and support conservation efforts aimed at preserving or restoring unique and/or rare small fishes in the Red River and other, similar stream systems.     

Improvement of the shallow water communities following reductions of industrial outlets and sewage discharge in the Hvaler estuary,Norway

Three years' investigations of the shallow water communities at 30 different rocky shore sites in an estuary in southeast Norway were carried out during 1980–1982. The flora was mostly poor, possibly due to a combination of fresh water exposure, industrial and sewage outlets. The aim of these investigations was to establish the environmental status of the estuary prior to huge outlet reductions in 1989/90. Later reinvestigations during 1992–1994, following a significant reduction of titanium dioxide wastes and building of a new chemical sewage treatment plant have shown an improvement of the macroalgal and benthic animal communities. In the formerly most polluted area, the number of benthic taxa has increased since 1980–1982 by 50–350% in 1992–1994.     

An advanced Index of Biotic Integrity for use in tropical shallow lowland streams in Costa Rica: Fish assemblages as indicators of stream ecosystem health

This paper presents an advanced version of the Index of Biotic Integrity (IBI), a multimetric index to indicate ecosystem health. The multimetric index has been adapted in such a way that it not only indicates overall condition but also specific causes of environmental disturbance. The newly developed index (a) uses data of tolerant as well as intolerant species in a single metric to indicate environmental disturbance, (b) does not require knowledge about species from the literature, and (c) can be applied to artificial landscapes.The metrics proposed here consist of indicator species assemblages that are selected directly for their relationship with an environmental component or specific type of environmental degradation. Thus, each metric indicates a type of environmental concern, which enables conservation practices to be targeted more effectively. Species assemblages for each single metric consist of a combination of species that can be negatively and positively related to environmental disturbances, providing a better indication of stream ecosystem health.The area studied was assumed to be too diverse for one single index. Canonical Indirect-Gradient Principal Component Analysis indicated that the optimal division of subindices based on stream typology was for streams with drainage basin sizes <10 km² and >10 km². Pearson Product-Moment Correlations were used to identify relationships between anthropogenic disturbances and the composition and abundance of fish species at impacted as well as undisturbed sites. This index proved to be useful for indicating overall stream ecosystem health as well as local onsite environmental disturbances or the environmental components of greatest concern. This index does require extensive information about measured levels of anthropogenic disturbances with the accompanying composition and abundance of fish species.     

COASTAL DIATOM‐ENVIRONMENT RELATIONSHIPS IN THE BRACKISH BALTIC SEA1

High‐quality calibration data sets are required when diatom assemblages are used for monitoring ecological change or reconstructing palaeo‐environments. The quality of such data sets can be validated, in addition to other criteria, by the percentage of significant unimodal species responses as a measure of the length of an environmental gradient. This study presents diatom‐environment relationships analyzed from a robust data set of diatom communities living on submerged stones along a 2,000 km long coastline in the Baltic Sea area, including 524 samples taken at 135 sites and covering a salinity gradient from 0.4 to 11.4. Altogether, 487 diatom taxa belonging to 102 genera were recorded. Detrended canonical correspondence analysis showed that salinity was the overriding environmental factor regulating diatom community composition, while exposure to wave action and nutrient concentrations were of secondary importance. Modeling the abundances of the 58 most common diatom taxa yielded significant relationships with salinity for 57 taxa. Twenty‐three taxa showing monotonic responses were species with optimum distributions in freshwater or marine waters. Thirty‐four taxa showing unimodal responses were brackish‐water species with maximum distributions at different salinities. Separate analyses for small (cell biovolume <1,000 μm³) and large (≥1,000 μm³) taxa yielded similar results. In previous studies along shorter salinity gradients, large and small epilithic diatom taxa responded differently. From our large data, we conclude that counts of large diatom taxa alone seem sufficient for indicating salinity changes in coastal environments with high precision.     

Structure and dynamics of zooplankton communities,Alligator Rivers Region,N.T., Australia

Biological monitoring in the Alligator Rivers region, northern Australia, provides baseline ecological information to assess the impact of uranium mining and milling and settlement in the area. Spatial and temporal variations 1978–1980 in zooplankton communities of the Magela Creek, a tributary of the East Alligator River, are described. Extremely diverse plankton assemblages occur late in the wet season (Dec.–May), with up to 80 taxa of rotifers and microcrustacea in some billabongs (= ox-bows), while there is a decrease in diversity but increase in population density as the dry season progresses. Natural fluctuations in water quality may be extreme, and limiting to plankters common elsewhere in the tropics. The plankton is composed largely of littoral or epiphytic taxa, with endemic species in all groups.     

Effects of emergence phenology, taxa tolerances and taxonomic resolution on the use of the Chironomid Pupal Exuvial Technique in river biomonitoring

1. We studied chironomid communities of four rivers in south‐eastern Finland, differing in their water quality, during summer 2004 using the Chironomid Pupal Exuvial Technique, CPET. The aims of the study were to (i) test the adequacy of the generic‐level identification in the CPET method, (ii) define the emergence patterns of chironomid taxa classified as intolerant to organic pollution, (iii) assess the tolerance levels of intolerant chironomids and (iv) identify taxa most indicative of good water quality. 2. Procrustean rotation analysis indicated very strong concordance between the ordinations using either species or genus‐level data, suggesting that generic‐level identification of chironomids is adequate for biomonitoring based on CPET. However, when only a few taxa occur in great numbers, it may be advisable to identify these to the species level, especially if these taxa are important indicators of the impact in question. 3. The detection of a particular species may require accurate timing of sampling, whereas a species‐rich genus might be detected throughout a season. Given that the emergence of chironomid species may vary from year‐to‐year and between sampling sites, community differences detected at the species level may be related to between‐site variation in species’ emergence patterns rather than true differences in species composition. 4. Indicator species analysis (IndVal) showed that the distribution and abundance of intolerant chironomid taxa differed strongly among the studied rivers. Some of the intolerant taxa were restricted to unimpacted conditions, whereas others occurred mainly in impacted rivers. Thus, the indicator status of some genera (e.g. Eukiefferiella, Parametriocnemus, Stempellinella and Tvetenia) needs reassessment.     

Spring phytoplankton of 54 small lakes in southern Finland

The abundance and species composition of phytoplankton communities were studied rapidly following the spring ice-melt in 54 small Finnish lakes that form a unique mosaic of water bodies. Phytoplankton biomass and cell density varied among the study lakes with a factor 100 between the lowest and highest values. Highest biomass and densities of phytoplankton characterized small ( < 0.05 km²) lakes with moderate or high water colour (> 80 mg Pt l^–1). In contrast, biomass was low in clear-water lakes and lakes where water throughflow was strong. Typically one species dominated most phytoplankton communities, and usually comprised up to about 45% of the total phytoplankton biomass. Two-thirds of the 103 taxa observed were Chrysophyceans and Chlorophyceans. The most common taxa wereChlamydomonas spp. (Chlorophyceae) andCryptomonas ovata (Cryptophyceae).     

Application of an index of biological integrity (IBI) to fish assemblages of the rivers Khan and Kshipra (Madhya Pradesh), India

1. A multimetric index of fish assemblage integrity was developed and similarity analyses were conducted on fish species in two central Indian rivers and the effects of distance from municipal and industrial effluents on those indices then evaluated.
2. Five metrics from Karr et al . (1986 , Illinois Natural History Survey Special Publication 5 , Urbana, IL) were adopted: intolerant species richness, % omnivorous individuals, % top carnivore individuals, total number of individuals and % individuals with anomalies. Seven new metrics (native species richness, native family richness, benthic species richness, water column species richness, % non-native individuals, % tolerant individuals and % herbivorous individuals) were added.
3. Non-native individuals represented 1–55% of the assemblages at sampled sites which held fish.
4. Fish were present at eleven sites and not collected at two sites, despite heavy metal concentrations exceeding U.S. Environmental Protection Agency acute criteria at all sites.
5. Two types of metric scoring were examined. The traditional 5–3–1 method showed the same pattern as continuous scoring from 0 to 10, but produced a higher integrity class at one site.
6. Scores on our modified index of fish assemblage integrity increased with distance downstream from a major effluent source in each river. Jaccard similarity scores between the least disturbed downstream site and all other sites decreased with increasing distance and disturbance.
7. It was concluded that Karr's original index and its theoretical foundations are easily adaptable, even to an ichthyofauna containing no species, and only two families (Cyprinidae, Poeciliidae), in common with the midwestern United States.