The roles of intermediates in biodegradation of benzene,toluene, and p-xylene by Pseudomonas putida F1

Several types of biodegradation experiments with benzene, toluene, or p-xylene show accumulation of intermediates by Pseudomonas putida F1. Under aerobic conditions, the major intermediates identified for benzene, toluene, and p-xylene are catechol, 3-methylcatechol, and 3,6-dimethylcatechol, respectively. Oxidations of catechol and 3-methylcatechol are linked to biomass synthesis. When oxygen is limited in the system, phenol (from benzene) and m-cresol and o-cresol (from toluene) accumulate.     

Degradation of carbazole and its derivatives by a Pseudomonas sp.

Carbazole, carbazoles with monomethyl or dimethyls substituted on different positions (C₁-carbazoles or C₂-carbazoles), and benzocarbazoles, as toxic and mutagenic components of petroleum and creosote contamination, were biodegradable by an isolated bacterial strain Pseudomonas sp. XLDN4-9. C₁-carbazoles were degraded in preference to carbazole and C₂-carbazoles. The biodegradation of C₁-carbazoles or C₂-carbazoles was influenced by the positions of methyl substitutions. Among C₁-carbazole isomers, 1-methyl carbazole was the most susceptible. C₂-carbazole isomers with substitutions on the same benzo-nucleus were more susceptible at a concentration of less than 3.4 μg g⁻¹ petroleum, especially when harboring one substitution on position 1. In particular, 1,5-dimethyl carbazole was the most recalcitrant dimethyl isomer.     

Effect of grazing by isopods and amphipods on growth of Ulva spp. (Chlorophyta)

Eutrophication of shallow coastal waters often leads to blooms of macroalgae. Grazing by crustaceans, such as amphipods and isopods, can reduce macroalgal biomass accumulation. At the same time, growth of the macroalgae can be stimulated by epiphyte removal. The role of grazing by isopods and amphipods on Ulva spp. biomass development was investigated in the Veerse Meer, a brackish lagoon situated in the southwest Netherlands. Exclusion of grazing in the field did not stimulate Ulva spp. growth. In fact, growth rates were higher in exclosures that allowed grazers to enter. Edibility tests identified the amphipod Gammarus locusta, and the isopods Idotea chelipes and Sphaeroma hookeri as potential grazers on Ulva spp. However, when epiphytic diatoms were present on the Ulva spp. thalli, Gammarus and Sphaeroma grazed on ephiphytes and not on Ulva tissue. Only Idotea continued to graze on Ulva spp. A laboratory growth experiment revealed a positive effect of Gammarus presence on Ulva spp. growth, probably caused by preferential removal of epiphytic diatoms from the Ulva spp. thalli. The growth stimulation by epiphyte removing grazers such as Gammarus may explain the higher growth rates in the presence of grazers observed in the field. When determining the potential role of invertebrate grazers in controlling macroalgal biomass accumulation, it is important to include an assessment of the epiphyte abundance on the macroalgae, as preferential removal of epiphytes may stimulate growth and thus have the opposite effect.     

Poly(hydroxyalkanoate) synthase genotype and PHA production of Pseudomonas corrugata and P. mediterranea

A collection of Pseudomonas corrugata and P. mediterranea strains, two closely related species, was evaluated for the presence and variability of pha loci. Using PCR methods that specifically amplify segments of medium-chain-length poly(hydroxyalkanoate) (mcl-PHA) synthase genes, we demonstrated the presence of phaC1 and phaC2 in all P. mediterranea strains tested and in six out of 56 strains of P. corrugata screened. The remaining 50 strains of P. corrugata yielded only the phaC2 subgene fragment on detection by a combined PCR-restriction endonuclease analysis method or a semi-nested PCR-amplification approach. A Southern hybridization study on a representative strain from this group, however, indicated the presence of the phaC1 gene. Nucleic acid sequences of the subgene phaC fragments of the representative strains from the three groups showed an overall similarity ranging from 95% to 100%. The major repeat-unit monomers of the mcl-PHAs isolated from these selected strains are -hydroxyoctanoate (33–47 mol%) and -hydroxydecanoate (26–36 mol%). These results differentiate for the first time the strains of P. corrugata into two pha-distinguishable groups. This study also documents for the first time the production of mcl-PHA in P. mediterranea.     

Optical resolution of RS-(±)-mandelic acid by Pseudomonas sp.

For the optical resolution of R-(–)-mandelic acid from (±)-mandelic acid, Pseudomonas sp. MA02, which assimilated S-(+)-mandelic acid as carbon and energy source, was isolated from soil. Using the fed-batch culture under optimal condition, R-(–)-mandelic acid was accumulated up to the maximum theoretical yield of 50% (30 g l^–1) and entiomeric excess of 99.4%.     

The effect of transposons on the expression of the naphthalene biodegradation genes in Pseudomonas putida BS202(NPL-1) and derivative strains

NPL-1 and its derivative plasmid pBS106, which control the degradation of naphthalene and salicylate, were found to contain class II transposons of the Tn3 family. These transposons are involved in intraplasmid rearrangements, such as deletions and inversions, and can influence the expression of the catabolic and regulatory genes borne by biodegradation plasmids. The formation of a strong NahR-independent constitutive promoter by the inversion of a DNA fragment may be responsible for changing the character of naphthalene dioxygenase synthesis from inducible (in the case of plasmid NPL-1) to constitutive (in the case of plasmid NPL-41). The stability of plasmids NPL-1 and NPL-41 in Pseudomonas putida strains grown on different substrates depends on the expression of the nah and tnp genes.Translated from Mikrobiologiya, Vol. 74, No. 1, 2005, pp. 79–86.Original Russian Text Copyright © 2005 by Sokolov, Kosheleva, Filonov, Boronin.     

Bioaugmentation of Mesorhizobium cicer,Pseudomonas spp. and Piriformospora indica for Sustainable Chickpea Production

Physiology and Molecular Biology of Plants - Chickpea establishes symbiotic association with Mesorhizobium to fulfill its nitrogen (N) requirement. Integrating chickpea rhizosphere with potential...     

Specific biodegradation of polychlorinated biphenyls (PCBs) facilitated by plant terpenoids

The aim of this study was to examine how plant terpenoids, as natural growth substrates or inducers, would affect the biodegradation of PCB congeners. Various PCB degraders that could grow on biphenyl and several terpenoids were tested for their PCB degradation capabilities. Degradation activities of the PCB congeners, 4,4′-dichlorobiphenyl (4,4′-DCBp) and 2,2′-dichlorobiphenyl (2,2′-DCBp), were initially monitored through a resting cell assay technique that could detect their degradation products. The PCB degraders,Pseudomonas sp. P166 andRhodococcus sp. T104, were found to grow on both biphenyl and terpenoids ((S)-(−) limonene,p-cymene and α-terpinene) whereasArthrobacter sp. B1B could not grow on the terpenoids as a sole carbon source. The B1B strain grown on biphenyl exhibited good degradation activity for 4,4′-DCBp and 2,2′-DCBp, while the activity of strains P166 and T104 was about 25% that of the B1B strain, respectively. Concomitant GC analysis, however, demonstrated that strain T104, grown on (S)-(−) limonene,p-cymene and α-terpinene, could degrade 4,4′-DCBp up to 30%, equivalent to 50% of the biphenyl induction level. Moreover, strain T104 grown on (S)-(−) limonene, could also degrade 2,2′-DCBp up to 30%. This indicates that terpenoids, widely distributed in nature, could be utilized as both growth and/or inducer substrate(s) for PCB biodegradation in the environment.     

Effect of chlorobenzoates on the degradation of polychlorinated biphenyls (PCB) by Pseudomonas stutzeri

Chlorobenzoic acids (CBA) are frequently dead-end products of partial aerobic biodegradation of polychlorinated biphenyls (PCB). When CBA produced from PCB accumulate in the growth medium, they can inhibit the bacterial growth and consequently, slow down PCB biodegradation. In this study, the effects of seven mono- and dichlorinated CBA on growth of Pseudomonas stutzeri on different substrates and on the PCB degradation by this strain in a liquid mineral medium were tested. 3-CBA was the strongest growth inhibitor for P. stutzeri growing on glucose, benzoate and biphenyl. It was found to inhibit heavily the elimination of some di- and trichlorinated biphenyls. In contrast, its influence on the elimination of more chlorinated congeners was much less significant.The authors are with the Department of Biochemical Technology, Faculty of Chemical Technology, Slovak Technical University, 812 37 Bratislava, Slovakia.     

Influence of rhizobacterial culture media on plant growth and oninhibition of fungal pathogens

The type of culture media significantly influenced thegrowth-promoting or growth-inhibiting effect of sevenPseudomonas spp. isolates on cucumber, as didthe type of bacterial isolate. All the bacterialisolates also inhibited fungal growth, in vitroand the degree of inhibition depended on the growthmedium of the two cultures. The degree of inhibitionwas affected by the growth-rate of the fungalpathogen. Proteolytic activity was detected in thesupernatants of the cultures of six out of sevenbacterial isolates and was media-dependent. Highproteolytic activity was measured in supernatants ofbacteria grown in two organic-based media, Tryptic SoyBroth and SNB nutrient broth, and/or in a Mineralmedium. In contrast, proteolytic activity was almost undetectable after growth in King's B medium. Proteolytic activity was significantly increased when the concentration ofproteose peptone in King's B medium was reduced by 50and 75 percent.     

SomeCortinarius spp. (Agaricales) of the Cooloola Sand-Mass,Queensland, Australia

Four distinct species ofCortinarius referable to subg.Dermocybe are described from the Cooloola Sand-Mass, Queensland; two are formally recognized asC. alkalivirens, spec. nova andC. chromobasis, spec. nova, whilst notes are provided for the other two. Chemical methods and cladistic studies are applied and indicate a new section of the subgenus is required.Australodermocybe sect. nova is proposed.     

Effects of VA-mycorrhizal fungi on growth and nutrient uptake of cuttings ofRosa multiflora in two container media with three levels of fertilizer application

Rooted cuttings ofRosa multiflora ‘Brooks 56’ were grown in a medium of 1 mineral soil: 1 sand (v/v) or bark: 1 sand (v/v) inoculated with the VA-mycorrhizal (VAM) fungiGlomus mosseae (Nicol. and Gerd.) Gerd. and Trappe andG. fasciculatum (Thaxt. sensu Gerd.) Gerd. and Trappe or left as noninoculated controls. The slow release fertilizer osmocote was applied at rates of either 0, 1.2, or 4.2 kg/m³ (18N-6P-12K) and incorporated into the container medium. After 180 days plants were evaluated for growth, development and chemical leaf analysis. Greatest growth responses occurred after the highest fertilizer application of 4.2 kg/m³, and the poorest one after 0 kg/m³. Combination bark: sand medium was superior to mineral soil: sand medium for growth of mycorrhizal plants. At 0 kg/m³, mycorrhizal plants in bark: sand medium had longer shoots than other treatments. At 1.2 kg/m³, VAM plants compared to nonmycorrhizal plants in park:sand medium had greater effect on growth parameters. At the highest fertilizer application of 4.2 kg/m³, greatest growth responses occurred with VAM plants in bark:sand medium. Mycorrhizal plants compared to nonmycorrhizal plants in bark:sand medium had greater K and Zn uptake at 0 kg/m³, and greater K, Ca, S, Mn and Zn uptake at 1.2 kg/m³. Texas Agr. Expt. Sta. Journal Series No. TA-22264.     

Optimization of extracellular psychrophilic alkaline lipase produced by marine Pseudomonas sp. (MSI057)

An endosymbiotic Pseudomonas sp. (MSI057), which could produce high yields of lipase, was isolated from marine sponge Dendrilla nigra, collected from the peninsular coast of India. Maximum production of enzyme was obtained in minimal medium supplemented with 1% tributyrin. Catabolite repression was observed when the medium was supplemented with readily available carbon sources. The optimum temperature and pH for the enzyme production was 30 degrees C and 9.0, respectively. The enzyme exhibited maximum activity in pH range of 8-9 with an optimum pH 9.0. The activity of purified enzyme was optimum at 37 degrees C and showed 80% activity at 20 degrees C and the enzyme activity decreased dramatically above 50 degrees C. Based on the present findings, the enzyme was characterized as psychrophilic alkaline lipase, which can be developed for industrial applications.     

Characterization of alginate lyase (ALYII) from Pseudomonas sp. OS-ALG-9 expressed in recombinant Escherichia coli

An alginate lyase named ALYII was purified to homogeneity from Escherichia coli JM109 carrying a recombinant plasmid, pJK26 harbouring the alyII gene from Pseudomonas sp. OS-ALG-9 by column chromatography with DEAE-cellulose, CM-Sephadex C-50, butyl-Toyopearl 650 M and isoelectric focusing. The molecular size of the purified ALYII was estimated to be 79 kDa by SDS-PAGE and its pI was 8.3. The enzyme was most active at pH 7.0 and 30 °C. Its activity was completely inhibited by Hg²⁺. The enzyme was poly -D-1, 4-mannuronate-specific rather than -D-1, 4-guluronate-specific and it showed a promotion effect in alginate degradation by combination with ALY, an another poly -D-1, 4-mannuronate-specific alginate lyase from the same strain.     

Further studies of the encapsulation of eggs ofMetaphycus spp. (Hym.: Encyrtidae) by the pyriform scale,Protopulvinaria pyriformis (Hom.: Coccidae)

The encapsulation of eggs ofMetaphycus swirskii Annecke &; Mynhardt (Hymenoptera: Encyrtidae) by the pyriform scale,Protopulvinaria pyriformis (Cockerell) (Homoptera: Coccidae), collected in the coastal plain of Israel, was determined during April 1986 to May 1987. The rates of encapsulation were low in November (13.0%) and relatively high in April, May, August and September (32.0–89.0%). The seasonal variations in the encapsulation of eggs ofM. stanleyi Compere and/orM. swirskii byP. pyriformis infesting avocado (Persea americana) and jambolan (Syzygium cumini) were studied at Miqwe Yisra'el (coastal plain) during October 1986 to February 1988. Encapsulation rates were similar in scales infesting either of the two host plants. They were highest during July to August (49.0–75.0%) and lowest during December to February (0.9–10.0%). Encapsulation incidence at Miqwe Yisra'el was correlated with the ambient temperatures (r=0.89). The rate of encapsulation of parasitoid eggs (M. stanleyi and/orM. galbus Annecke) recorded inP. pyriformis sent to Israel from Spain in September 1987 was 42.2%. The high rates of encapsulation ofMetaphycus spp. eggs byP. pyriformis during the summer, may interfere with efficient biological control of the pest.     

Influence of Liquid Pulse Treatment with Growth Regulators on in vitro Propagation of Banana (Musa spp. AAA)

The effect of liquid pulse treatment of growth regulators on in vitro propagation of banana (Musa spp. AAA) was studied. Optimal shoot proliferation rates were achieved due to the pulse treatment of 6-benzylaminopurine (BA) and kinetin combination (1:1) at the concentration of 50 mg l^–1 for 60 min. Similarly high frequency of root induction was obtained due to pulse treatment with a NAA and IBA combination (1:1) at the concentration of 100 mg l^–1 for 60 min.     

Hyperparasitism by Mesochorus spp. (Hymenoptera: Ichneumonidae) in Peristenus sp. (Hymenoptera: Braconidae) and development of PCR primers for hyperparasitoid detection

Peristenus sp. pupae collected from Lygus spp. nymphs in 2001 and 2002 were over-wintered in the laboratory. In both years, more than 30% of adults emerging from over-wintering pupae were identified as ichneumonid hyperparasitoids, Mesochorus curvulus Thomson and Meschorus sp. (Hymenoptera: Ichneumonidae). At the end of the over-wintering period, Peristenus sp. males emerged first followed by Peristenus sp. females and finally Mesochorus spp. The male:female ratio in emerging Peristenus sp. adults was skewed towards males. The Internal Transcribed Spacer (ITS) region and the cytochrome oxidase I (COI) gene from Mesochorus spp. were sequenced. ITS sequences were used to develop PCR primers to detect Mesochorus spp. hyperparasitism in the primary host, Lygus spp. PCR analysis of field-collected Lygus spp. nymphs gave similar estimates of Mesochorus spp. hyperparasitism to the rearing protocols (25–28%). Sequence analysis of COI and ITS regions and subsequent restriction endonuclease analysis of ITS PCR products from Mesochorus spp. indicate the presence of two genotypes in the population. The possibility that these two genotypes represent separate or cyrptic species is discussed.     

7,10-Dihydroxy-8(E)-octadecenoic acid produced by Pseudomonas 42A2: evaluation of different cultural parameters of the fermentation

A fermentation process for the microbial production of a new lipid surface-active compound, 7,10-dihydroxy-8 (E)-octadecenoic acid (OCD), has been established using a vegetable oil as carbon source in a coordinated carbon/nitrogen feed strategy. The surfactant was produced during the logarithmic growth phase. Aeration was the most critical parameter for product formation. Up to 7 g product/l was produced.The authors are with the Laboratorio de Microbiologia, Facultad de Farmacia, Avenida Diagonal 643, Universidad de Barcelona, 08028 Barcelona, Spain     

Predicting the distribution of the crested tinamous, Eudromia spp. (Aves, Tinamiformes)

A bioclimatic analysis of the crested tinamous was conducted to explore climatic factors underpinning the distribution of both Eudromia elegans and E. formosa and to evaluate its potential application in paleontological studies. The study utilized records throughout the entire known range of Eudromia spp. in southern South America. Relationships between 20 environmental parameters and the presence of Eudromia species were established, mapping and characterizing their spatial distribution in a geographic information system using BIOCLIM and MAXENT algorithms. The MAXENT prediction map shows a more homogeneous pattern while BIOCLIM showed a patchier pattern. The models applied here generated maps that adjust to the well-known previous distributions of both species. Nevertheless, for Eudromia elegans, the distribution predicted by MAXENT includes areas where it is actually considered absent, and the BIOCLIM prediction does not include some areas where it is presumed present. Eudromia formosa were found in warmer and wetter sites than E. elegans. Low precipitation areas were identified as suitable for Eudromia elegans. Strong differences between the climatic profiles for both Eudromia spp distributions occurred, with the precipitation the most important influence. E. formosa tolerates the highest maximum temperatures, whereas E. elegans supports the lowest temperatures.